Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0964

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0963 and Ga0059261_0964 are separated by 162 nucleotidesGa0059261_0964 and Ga0059261_0965 are separated by 27 nucleotides Ga0059261_0963: Ga0059261_0963 - hypothetical protein, at 995,530 to 996,027 _0963 Ga0059261_0964: Ga0059261_0964 - Superfamily II DNA and RNA helicases, at 996,190 to 997,770 _0964 Ga0059261_0965: Ga0059261_0965 - hypothetical protein, at 997,798 to 998,751 _0965 Position (kb) 996 997 998Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 995.204 kb on + strandat 995.205 kb on - strandat 995.232 kb on + strandat 995.238 kb on + strandat 995.238 kb on + strandat 995.701 kb on + strand, within Ga0059261_0963at 995.701 kb on + strandat 995.701 kb on + strand, within Ga0059261_0963at 995.701 kb on + strand, within Ga0059261_0963at 995.702 kb on - strand, within Ga0059261_0963at 995.702 kb on - strandat 995.845 kb on + strand, within Ga0059261_0963at 995.845 kb on + strand, within Ga0059261_0963at 995.846 kb on - strand, within Ga0059261_0963at 995.846 kb on - strand, within Ga0059261_0963at 995.911 kb on + strand, within Ga0059261_0963at 995.911 kb on + strand, within Ga0059261_0963at 995.912 kb on - strand, within Ga0059261_0963at 996.142 kb on + strandat 996.142 kb on + strandat 996.142 kb on + strandat 996.143 kb on - strandat 996.143 kb on - strandat 996.143 kb on - strandat 996.155 kb on - strandat 996.155 kb on - strandat 996.155 kb on - strandat 996.155 kb on - strandat 996.301 kb on + strandat 996.589 kb on + strand, within Ga0059261_0964at 996.668 kb on - strandat 996.668 kb on - strand, within Ga0059261_0964at 996.918 kb on + strand, within Ga0059261_0964at 997.222 kb on + strand, within Ga0059261_0964at 997.222 kb on + strandat 997.222 kb on + strand, within Ga0059261_0964at 997.222 kb on + strand, within Ga0059261_0964at 997.222 kb on + strand, within Ga0059261_0964at 997.222 kb on + strand, within Ga0059261_0964at 997.223 kb on - strandat 997.223 kb on - strand, within Ga0059261_0964at 997.223 kb on - strand, within Ga0059261_0964at 997.223 kb on - strand, within Ga0059261_0964at 997.303 kb on + strand, within Ga0059261_0964at 997.304 kb on - strand, within Ga0059261_0964at 997.699 kb on + strandat 997.699 kb on + strandat 997.700 kb on - strandat 997.700 kb on - strandat 997.700 kb on - strandat 997.913 kb on + strand, within Ga0059261_0965at 997.913 kb on + strand, within Ga0059261_0965at 997.913 kb on + strand, within Ga0059261_0965at 998.121 kb on + strand, within Ga0059261_0965at 998.126 kb on + strand, within Ga0059261_0965at 998.126 kb on + strand, within Ga0059261_0965at 998.126 kb on + strand, within Ga0059261_0965at 998.126 kb on + strand, within Ga0059261_0965at 998.126 kb on + strand, within Ga0059261_0965at 998.126 kb on + strand, within Ga0059261_0965at 998.126 kb on + strand, within Ga0059261_0965at 998.126 kb on + strand, within Ga0059261_0965at 998.127 kb on - strand, within Ga0059261_0965at 998.127 kb on - strand, within Ga0059261_0965at 998.127 kb on - strand, within Ga0059261_0965at 998.127 kb on - strand, within Ga0059261_0965at 998.127 kb on - strand, within Ga0059261_0965at 998.159 kb on - strand, within Ga0059261_0965at 998.159 kb on - strand, within Ga0059261_0965at 998.159 kb on - strand, within Ga0059261_0965at 998.268 kb on + strand, within Ga0059261_0965at 998.268 kb on + strand, within Ga0059261_0965at 998.268 kb on + strand, within Ga0059261_0965at 998.269 kb on - strand, within Ga0059261_0965at 998.269 kb on - strand, within Ga0059261_0965at 998.270 kb on + strand, within Ga0059261_0965at 998.270 kb on + strand, within Ga0059261_0965at 998.270 kb on + strand, within Ga0059261_0965at 998.270 kb on + strand, within Ga0059261_0965at 998.270 kb on + strand, within Ga0059261_0965at 998.270 kb on + strand, within Ga0059261_0965at 998.270 kb on + strand, within Ga0059261_0965at 998.270 kb on + strand, within Ga0059261_0965at 998.271 kb on - strand, within Ga0059261_0965at 998.271 kb on - strand, within Ga0059261_0965at 998.271 kb on - strandat 998.271 kb on - strand, within Ga0059261_0965at 998.271 kb on - strand, within Ga0059261_0965at 998.271 kb on - strand, within Ga0059261_0965at 998.271 kb on - strand, within Ga0059261_0965at 998.271 kb on - strand, within Ga0059261_0965at 998.271 kb on - strand, within Ga0059261_0965at 998.271 kb on - strand, within Ga0059261_0965at 998.637 kb on - strand, within Ga0059261_0965at 998.652 kb on + strand, within Ga0059261_0965at 998.652 kb on + strand, within Ga0059261_0965at 998.652 kb on + strand, within Ga0059261_0965at 998.652 kb on + strand, within Ga0059261_0965at 998.653 kb on - strand, within Ga0059261_0965at 998.653 kb on - strand, within Ga0059261_0965at 998.653 kb on - strand, within Ga0059261_0965at 998.653 kb on - strand, within Ga0059261_0965

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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995,204 + -2.0
995,205 - -1.2
995,232 + -1.8
995,238 + +0.8
995,238 + -0.0
995,701 + Ga0059261_0963 0.34 -0.6
995,701 + -0.0
995,701 + Ga0059261_0963 0.34 -0.0
995,701 + Ga0059261_0963 0.34 +0.9
995,702 - Ga0059261_0963 0.35 +0.7
995,702 - +2.9
995,845 + Ga0059261_0963 0.63 -1.8
995,845 + Ga0059261_0963 0.63 +0.5
995,846 - Ga0059261_0963 0.63 +0.7
995,846 - Ga0059261_0963 0.63 +1.4
995,911 + Ga0059261_0963 0.77 +0.7
995,911 + Ga0059261_0963 0.77 -0.1
995,912 - Ga0059261_0963 0.77 -3.0
996,142 + +2.5
996,142 + +0.7
996,142 + +1.3
996,143 - -1.2
996,143 - -0.7
996,143 - -1.5
996,155 - +0.9
996,155 - -0.6
996,155 - -0.2
996,155 - +0.7
996,301 + -0.8
996,589 + Ga0059261_0964 0.25 +0.7
996,668 - +0.3
996,668 - Ga0059261_0964 0.30 -0.5
996,918 + Ga0059261_0964 0.46 +0.7
997,222 + Ga0059261_0964 0.65 -1.2
997,222 + +0.7
997,222 + Ga0059261_0964 0.65 -0.9
997,222 + Ga0059261_0964 0.65 -0.0
997,222 + Ga0059261_0964 0.65 +0.3
997,222 + Ga0059261_0964 0.65 -0.7
997,223 - +0.3
997,223 - Ga0059261_0964 0.65 -0.3
997,223 - Ga0059261_0964 0.65 -1.0
997,223 - Ga0059261_0964 0.65 -1.2
997,303 + Ga0059261_0964 0.70 -0.0
997,304 - Ga0059261_0964 0.70 -0.5
997,699 + +0.7
997,699 + -2.3
997,700 - +1.1
997,700 - +0.6
997,700 - +2.7
997,913 + Ga0059261_0965 0.12 -0.4
997,913 + Ga0059261_0965 0.12 +3.2
997,913 + Ga0059261_0965 0.12 +0.2
998,121 + Ga0059261_0965 0.34 -1.2
998,126 + Ga0059261_0965 0.34 -0.3
998,126 + Ga0059261_0965 0.34 -0.4
998,126 + Ga0059261_0965 0.34 -0.3
998,126 + Ga0059261_0965 0.34 +1.6
998,126 + Ga0059261_0965 0.34 +1.9
998,126 + Ga0059261_0965 0.34 -0.1
998,126 + Ga0059261_0965 0.34 +0.4
998,126 + Ga0059261_0965 0.34 +0.7
998,127 - Ga0059261_0965 0.34 +0.4
998,127 - Ga0059261_0965 0.34 -0.1
998,127 - Ga0059261_0965 0.34 -0.8
998,127 - Ga0059261_0965 0.34 -1.8
998,127 - Ga0059261_0965 0.34 -0.0
998,159 - Ga0059261_0965 0.38 -0.7
998,159 - Ga0059261_0965 0.38 -0.0
998,159 - Ga0059261_0965 0.38 -0.5
998,268 + Ga0059261_0965 0.49 +1.8
998,268 + Ga0059261_0965 0.49 -0.7
998,268 + Ga0059261_0965 0.49 +0.8
998,269 - Ga0059261_0965 0.49 -0.9
998,269 - Ga0059261_0965 0.49 -2.2
998,270 + Ga0059261_0965 0.49 +0.5
998,270 + Ga0059261_0965 0.49 -1.4
998,270 + Ga0059261_0965 0.49 -0.3
998,270 + Ga0059261_0965 0.49 +0.5
998,270 + Ga0059261_0965 0.49 +1.0
998,270 + Ga0059261_0965 0.49 -0.3
998,270 + Ga0059261_0965 0.49 -0.3
998,270 + Ga0059261_0965 0.49 +0.7
998,271 - Ga0059261_0965 0.50 +2.3
998,271 - Ga0059261_0965 0.50 +1.0
998,271 - +0.7
998,271 - Ga0059261_0965 0.50 -1.4
998,271 - Ga0059261_0965 0.50 -1.0
998,271 - Ga0059261_0965 0.50 +1.8
998,271 - Ga0059261_0965 0.50 -2.0
998,271 - Ga0059261_0965 0.50 +0.7
998,271 - Ga0059261_0965 0.50 +1.7
998,271 - Ga0059261_0965 0.50 -0.0
998,637 - Ga0059261_0965 0.88 +1.0
998,652 + Ga0059261_0965 0.90 -0.5
998,652 + Ga0059261_0965 0.90 -1.5
998,652 + Ga0059261_0965 0.90 +2.5
998,652 + Ga0059261_0965 0.90 +0.7
998,653 - Ga0059261_0965 0.90 -0.4
998,653 - Ga0059261_0965 0.90 +0.4
998,653 - Ga0059261_0965 0.90 +3.5
998,653 - Ga0059261_0965 0.90 -3.0

Or see this region's nucleotide sequence