Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0882

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0881 and Ga0059261_0882 are separated by 160 nucleotidesGa0059261_0882 and Ga0059261_0883 overlap by 23 nucleotidesGa0059261_0883 and Ga0059261_0884 are separated by 72 nucleotides Ga0059261_0881: Ga0059261_0881 - tRNA and rRNA cytosine-C5-methylases, at 921,838 to 923,022 _0881 Ga0059261_0882: Ga0059261_0882 - Predicted membrane protein, at 923,183 to 924,352 _0882 Ga0059261_0883: Ga0059261_0883 - hypothetical protein, at 924,330 to 925,121 _0883 Ga0059261_0884: Ga0059261_0884 - Transcriptional regulator, at 925,194 to 926,099 _0884 Position (kb) 923 924 925Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 922.484 kb on + strand, within Ga0059261_0881at 922.484 kb on + strand, within Ga0059261_0881at 922.485 kb on - strand, within Ga0059261_0881at 922.485 kb on - strand, within Ga0059261_0881at 922.485 kb on - strand, within Ga0059261_0881at 922.752 kb on - strandat 922.752 kb on - strand, within Ga0059261_0881at 922.902 kb on - strandat 922.902 kb on - strand, within Ga0059261_0881at 923.004 kb on + strandat 923.142 kb on + strandat 923.143 kb on - strandat 923.357 kb on + strand, within Ga0059261_0882at 923.357 kb on + strand, within Ga0059261_0882at 923.420 kb on + strand, within Ga0059261_0882at 923.420 kb on + strand, within Ga0059261_0882at 923.420 kb on + strand, within Ga0059261_0882at 923.421 kb on - strand, within Ga0059261_0882at 923.421 kb on - strand, within Ga0059261_0882at 923.421 kb on - strandat 923.421 kb on - strand, within Ga0059261_0882at 923.421 kb on - strand, within Ga0059261_0882at 923.421 kb on - strand, within Ga0059261_0882at 923.461 kb on + strand, within Ga0059261_0882at 923.461 kb on + strand, within Ga0059261_0882at 923.461 kb on + strand, within Ga0059261_0882at 923.462 kb on - strand, within Ga0059261_0882at 923.462 kb on - strand, within Ga0059261_0882at 923.462 kb on - strand, within Ga0059261_0882at 923.544 kb on - strand, within Ga0059261_0882at 923.544 kb on - strand, within Ga0059261_0882at 923.544 kb on - strand, within Ga0059261_0882at 923.547 kb on + strand, within Ga0059261_0882at 923.574 kb on + strand, within Ga0059261_0882at 923.627 kb on + strand, within Ga0059261_0882at 923.628 kb on - strand, within Ga0059261_0882at 923.657 kb on + strand, within Ga0059261_0882at 923.657 kb on + strand, within Ga0059261_0882at 923.657 kb on + strand, within Ga0059261_0882at 923.657 kb on + strand, within Ga0059261_0882at 923.657 kb on + strand, within Ga0059261_0882at 923.657 kb on + strand, within Ga0059261_0882at 923.658 kb on - strand, within Ga0059261_0882at 923.672 kb on + strand, within Ga0059261_0882at 923.673 kb on - strand, within Ga0059261_0882at 923.673 kb on - strand, within Ga0059261_0882at 923.673 kb on - strand, within Ga0059261_0882at 923.731 kb on + strand, within Ga0059261_0882at 923.794 kb on + strand, within Ga0059261_0882at 923.794 kb on + strand, within Ga0059261_0882at 923.794 kb on + strand, within Ga0059261_0882at 923.794 kb on + strand, within Ga0059261_0882at 923.794 kb on + strand, within Ga0059261_0882at 923.795 kb on - strand, within Ga0059261_0882at 923.795 kb on - strand, within Ga0059261_0882at 923.795 kb on - strand, within Ga0059261_0882at 923.795 kb on - strand, within Ga0059261_0882at 923.795 kb on - strand, within Ga0059261_0882at 923.795 kb on - strand, within Ga0059261_0882at 923.795 kb on - strand, within Ga0059261_0882at 923.795 kb on - strand, within Ga0059261_0882at 923.795 kb on - strand, within Ga0059261_0882at 923.908 kb on + strand, within Ga0059261_0882at 923.909 kb on - strand, within Ga0059261_0882at 923.954 kb on + strand, within Ga0059261_0882at 923.955 kb on - strand, within Ga0059261_0882at 923.955 kb on - strand, within Ga0059261_0882at 924.015 kb on - strand, within Ga0059261_0882at 924.022 kb on + strand, within Ga0059261_0882at 924.022 kb on + strand, within Ga0059261_0882at 924.022 kb on + strand, within Ga0059261_0882at 924.022 kb on + strand, within Ga0059261_0882at 924.022 kb on + strand, within Ga0059261_0882at 924.022 kb on + strand, within Ga0059261_0882at 924.022 kb on + strand, within Ga0059261_0882at 924.023 kb on - strand, within Ga0059261_0882at 924.023 kb on - strand, within Ga0059261_0882at 924.023 kb on - strand, within Ga0059261_0882at 924.023 kb on - strand, within Ga0059261_0882at 924.023 kb on - strand, within Ga0059261_0882at 924.023 kb on - strand, within Ga0059261_0882at 924.023 kb on - strand, within Ga0059261_0882at 924.023 kb on - strand, within Ga0059261_0882at 924.023 kb on - strand, within Ga0059261_0882at 924.108 kb on + strand, within Ga0059261_0882at 924.149 kb on + strand, within Ga0059261_0882at 924.149 kb on + strand, within Ga0059261_0882at 924.149 kb on + strand, within Ga0059261_0882at 924.149 kb on + strand, within Ga0059261_0882at 924.150 kb on - strand, within Ga0059261_0882at 924.150 kb on - strand, within Ga0059261_0882at 924.359 kb on - strandat 924.359 kb on - strandat 924.479 kb on - strand, within Ga0059261_0883at 924.571 kb on + strand, within Ga0059261_0883at 924.571 kb on + strand, within Ga0059261_0883at 924.571 kb on + strand, within Ga0059261_0883at 924.571 kb on + strand, within Ga0059261_0883at 924.572 kb on - strand, within Ga0059261_0883at 924.572 kb on - strand, within Ga0059261_0883at 924.572 kb on - strand, within Ga0059261_0883at 924.592 kb on + strand, within Ga0059261_0883at 924.593 kb on - strand, within Ga0059261_0883at 924.593 kb on - strand, within Ga0059261_0883at 924.593 kb on - strand, within Ga0059261_0883at 924.619 kb on + strand, within Ga0059261_0883at 924.620 kb on - strand, within Ga0059261_0883at 924.620 kb on - strand, within Ga0059261_0883at 924.701 kb on + strand, within Ga0059261_0883at 924.771 kb on + strand, within Ga0059261_0883at 924.771 kb on + strand, within Ga0059261_0883at 924.771 kb on + strand, within Ga0059261_0883at 924.771 kb on + strand, within Ga0059261_0883at 924.771 kb on + strand, within Ga0059261_0883at 924.772 kb on - strand, within Ga0059261_0883at 924.772 kb on - strand, within Ga0059261_0883at 924.899 kb on + strand, within Ga0059261_0883at 924.900 kb on - strand, within Ga0059261_0883at 924.983 kb on + strand, within Ga0059261_0883at 924.984 kb on - strand, within Ga0059261_0883at 924.984 kb on - strand, within Ga0059261_0883at 924.987 kb on - strand, within Ga0059261_0883at 925.162 kb on + strandat 925.162 kb on + strandat 925.162 kb on + strandat 925.173 kb on + strandat 925.173 kb on + strandat 925.174 kb on - strandat 925.174 kb on - strandat 925.174 kb on - strandat 925.174 kb on - strandat 925.174 kb on - strandat 925.174 kb on - strandat 925.179 kb on + strandat 925.179 kb on + strandat 925.180 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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922,484 + Ga0059261_0881 0.55 -1.9
922,484 + Ga0059261_0881 0.55 -1.2
922,485 - Ga0059261_0881 0.55 +1.3
922,485 - Ga0059261_0881 0.55 +3.4
922,485 - Ga0059261_0881 0.55 -2.4
922,752 - +2.3
922,752 - Ga0059261_0881 0.77 -1.2
922,902 - +3.3
922,902 - Ga0059261_0881 0.90 -1.8
923,004 + -1.9
923,142 + -0.7
923,143 - +1.6
923,357 + Ga0059261_0882 0.15 +1.5
923,357 + Ga0059261_0882 0.15 -1.2
923,420 + Ga0059261_0882 0.20 +0.3
923,420 + Ga0059261_0882 0.20 -0.4
923,420 + Ga0059261_0882 0.20 +0.8
923,421 - Ga0059261_0882 0.20 +1.1
923,421 - Ga0059261_0882 0.20 -0.0
923,421 - +1.3
923,421 - Ga0059261_0882 0.20 -2.2
923,421 - Ga0059261_0882 0.20 +0.6
923,421 - Ga0059261_0882 0.20 +1.5
923,461 + Ga0059261_0882 0.24 +1.2
923,461 + Ga0059261_0882 0.24 -0.1
923,461 + Ga0059261_0882 0.24 -0.6
923,462 - Ga0059261_0882 0.24 +1.3
923,462 - Ga0059261_0882 0.24 +1.5
923,462 - Ga0059261_0882 0.24 +0.0
923,544 - Ga0059261_0882 0.31 +0.2
923,544 - Ga0059261_0882 0.31 +0.7
923,544 - Ga0059261_0882 0.31 -0.6
923,547 + Ga0059261_0882 0.31 -0.7
923,574 + Ga0059261_0882 0.33 -0.9
923,627 + Ga0059261_0882 0.38 +0.2
923,628 - Ga0059261_0882 0.38 +1.3
923,657 + Ga0059261_0882 0.41 +0.1
923,657 + Ga0059261_0882 0.41 +1.6
923,657 + Ga0059261_0882 0.41 -0.4
923,657 + Ga0059261_0882 0.41 +0.0
923,657 + Ga0059261_0882 0.41 -0.3
923,657 + Ga0059261_0882 0.41 +0.7
923,658 - Ga0059261_0882 0.41 -1.3
923,672 + Ga0059261_0882 0.42 +0.8
923,673 - Ga0059261_0882 0.42 +0.6
923,673 - Ga0059261_0882 0.42 -0.1
923,673 - Ga0059261_0882 0.42 +1.4
923,731 + Ga0059261_0882 0.47 -1.0
923,794 + Ga0059261_0882 0.52 -1.5
923,794 + Ga0059261_0882 0.52 -3.0
923,794 + Ga0059261_0882 0.52 -0.0
923,794 + Ga0059261_0882 0.52 -0.3
923,794 + Ga0059261_0882 0.52 -0.0
923,795 - Ga0059261_0882 0.52 +0.6
923,795 - Ga0059261_0882 0.52 +0.7
923,795 - Ga0059261_0882 0.52 -0.7
923,795 - Ga0059261_0882 0.52 +2.6
923,795 - Ga0059261_0882 0.52 +0.6
923,795 - Ga0059261_0882 0.52 -1.0
923,795 - Ga0059261_0882 0.52 -0.2
923,795 - Ga0059261_0882 0.52 +0.6
923,795 - Ga0059261_0882 0.52 -1.8
923,908 + Ga0059261_0882 0.62 -1.1
923,909 - Ga0059261_0882 0.62 -0.0
923,954 + Ga0059261_0882 0.66 +1.1
923,955 - Ga0059261_0882 0.66 -1.5
923,955 - Ga0059261_0882 0.66 +2.5
924,015 - Ga0059261_0882 0.71 +2.3
924,022 + Ga0059261_0882 0.72 +0.2
924,022 + Ga0059261_0882 0.72 +2.3
924,022 + Ga0059261_0882 0.72 +0.7
924,022 + Ga0059261_0882 0.72 -0.5
924,022 + Ga0059261_0882 0.72 -0.6
924,022 + Ga0059261_0882 0.72 -0.2
924,022 + Ga0059261_0882 0.72 -1.4
924,023 - Ga0059261_0882 0.72 -0.3
924,023 - Ga0059261_0882 0.72 +2.2
924,023 - Ga0059261_0882 0.72 +1.2
924,023 - Ga0059261_0882 0.72 +1.0
924,023 - Ga0059261_0882 0.72 +0.4
924,023 - Ga0059261_0882 0.72 +0.1
924,023 - Ga0059261_0882 0.72 -1.0
924,023 - Ga0059261_0882 0.72 +0.3
924,023 - Ga0059261_0882 0.72 -2.4
924,108 + Ga0059261_0882 0.79 -1.3
924,149 + Ga0059261_0882 0.83 +1.4
924,149 + Ga0059261_0882 0.83 +2.3
924,149 + Ga0059261_0882 0.83 -1.0
924,149 + Ga0059261_0882 0.83 +1.8
924,150 - Ga0059261_0882 0.83 +0.4
924,150 - Ga0059261_0882 0.83 +0.4
924,359 - +0.0
924,359 - +1.2
924,479 - Ga0059261_0883 0.19 -2.2
924,571 + Ga0059261_0883 0.30 +0.3
924,571 + Ga0059261_0883 0.30 +0.5
924,571 + Ga0059261_0883 0.30 +0.3
924,571 + Ga0059261_0883 0.30 +0.1
924,572 - Ga0059261_0883 0.31 +0.1
924,572 - Ga0059261_0883 0.31 -3.1
924,572 - Ga0059261_0883 0.31 +0.4
924,592 + Ga0059261_0883 0.33 +4.5
924,593 - Ga0059261_0883 0.33 -3.2
924,593 - Ga0059261_0883 0.33 -1.3
924,593 - Ga0059261_0883 0.33 +1.3
924,619 + Ga0059261_0883 0.36 -1.2
924,620 - Ga0059261_0883 0.37 -1.1
924,620 - Ga0059261_0883 0.37 +2.0
924,701 + Ga0059261_0883 0.47 +2.7
924,771 + Ga0059261_0883 0.56 -2.6
924,771 + Ga0059261_0883 0.56 +1.3
924,771 + Ga0059261_0883 0.56 -2.1
924,771 + Ga0059261_0883 0.56 +0.3
924,771 + Ga0059261_0883 0.56 -0.9
924,772 - Ga0059261_0883 0.56 -0.1
924,772 - Ga0059261_0883 0.56 +0.7
924,899 + Ga0059261_0883 0.72 -1.5
924,900 - Ga0059261_0883 0.72 -1.4
924,983 + Ga0059261_0883 0.82 +0.2
924,984 - Ga0059261_0883 0.83 -2.4
924,984 - Ga0059261_0883 0.83 +0.6
924,987 - Ga0059261_0883 0.83 +3.4
925,162 + -0.4
925,162 + +1.2
925,162 + -0.6
925,173 + -0.1
925,173 + +3.1
925,174 - -1.1
925,174 - -1.4
925,174 - -1.5
925,174 - -1.4
925,174 - +0.6
925,174 - +1.6
925,179 + +2.8
925,179 + -1.1
925,180 - -1.9

Or see this region's nucleotide sequence