Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0818 and Ga0059261_0819 are separated by 78 nucleotides Ga0059261_0819 and Ga0059261_0820 are separated by 403 nucleotides
Ga0059261_0818: Ga0059261_0818 - OmpA family, at 860,222 to 861,109
_0818
Ga0059261_0819: Ga0059261_0819 - Holliday junction DNA helicase subunit RuvB, at 861,188 to 862,216
_0819
Ga0059261_0820: Ga0059261_0820 - Holliday junction DNA helicase subunit RuvA, at 862,620 to 863,219
_0820
Position (kb) 861
862
863 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 860.336 kb on + strand, within Ga0059261_0818 at 860.336 kb on + strand, within Ga0059261_0818 at 860.337 kb on - strand, within Ga0059261_0818 at 860.389 kb on + strand, within Ga0059261_0818 at 860.389 kb on + strand, within Ga0059261_0818 at 860.389 kb on + strand, within Ga0059261_0818 at 860.389 kb on + strand, within Ga0059261_0818 at 860.390 kb on - strand, within Ga0059261_0818 at 860.390 kb on - strand, within Ga0059261_0818 at 860.390 kb on - strand, within Ga0059261_0818 at 860.474 kb on + strand, within Ga0059261_0818 at 860.723 kb on + strand at 860.723 kb on + strand, within Ga0059261_0818 at 860.723 kb on + strand, within Ga0059261_0818 at 860.723 kb on + strand, within Ga0059261_0818 at 860.723 kb on + strand, within Ga0059261_0818 at 860.724 kb on - strand, within Ga0059261_0818 at 860.724 kb on - strand, within Ga0059261_0818 at 860.724 kb on - strand, within Ga0059261_0818 at 860.724 kb on - strand, within Ga0059261_0818 at 860.724 kb on - strand, within Ga0059261_0818 at 860.724 kb on - strand, within Ga0059261_0818 at 860.724 kb on - strand, within Ga0059261_0818 at 860.724 kb on - strand, within Ga0059261_0818 at 860.724 kb on - strand, within Ga0059261_0818 at 860.724 kb on - strand, within Ga0059261_0818 at 860.724 kb on - strand, within Ga0059261_0818 at 860.724 kb on - strand, within Ga0059261_0818 at 860.725 kb on + strand, within Ga0059261_0818 at 860.725 kb on + strand, within Ga0059261_0818 at 860.725 kb on + strand, within Ga0059261_0818 at 860.725 kb on + strand, within Ga0059261_0818 at 860.725 kb on + strand, within Ga0059261_0818 at 860.726 kb on - strand, within Ga0059261_0818 at 860.726 kb on - strand, within Ga0059261_0818 at 860.859 kb on - strand, within Ga0059261_0818 at 860.859 kb on - strand, within Ga0059261_0818 at 860.861 kb on - strand, within Ga0059261_0818 at 860.861 kb on - strand, within Ga0059261_0818 at 860.930 kb on + strand, within Ga0059261_0818 at 860.930 kb on + strand, within Ga0059261_0818 at 860.931 kb on - strand, within Ga0059261_0818 at 860.931 kb on - strand, within Ga0059261_0818 at 861.174 kb on + strand at 861.189 kb on + strand at 862.218 kb on + strand at 862.305 kb on - strand at 862.305 kb on - strand at 862.316 kb on + strand at 862.316 kb on + strand at 862.317 kb on - strand at 862.317 kb on - strand at 862.317 kb on - strand at 862.317 kb on - strand at 862.365 kb on + strand at 862.366 kb on - strand at 862.366 kb on - strand at 862.440 kb on + strand at 862.448 kb on + strand at 862.449 kb on - strand at 862.449 kb on - strand at 862.449 kb on - strand at 862.449 kb on - strand at 862.483 kb on - strand at 862.483 kb on - strand at 862.498 kb on - strand at 862.498 kb on - strand at 862.498 kb on - strand at 862.926 kb on + strand, within Ga0059261_0820
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 860,336 + Ga0059261_0818 0.13 +1.6 860,336 + Ga0059261_0818 0.13 -1.1 860,337 - Ga0059261_0818 0.13 +2.3 860,389 + Ga0059261_0818 0.19 +0.5 860,389 + Ga0059261_0818 0.19 +0.1 860,389 + Ga0059261_0818 0.19 +5.4 860,389 + Ga0059261_0818 0.19 +0.3 860,390 - Ga0059261_0818 0.19 -1.3 860,390 - Ga0059261_0818 0.19 +1.1 860,390 - Ga0059261_0818 0.19 +0.7 860,474 + Ga0059261_0818 0.28 +1.6 860,723 + +0.7 860,723 + Ga0059261_0818 0.56 -1.8 860,723 + Ga0059261_0818 0.56 +0.2 860,723 + Ga0059261_0818 0.56 -0.8 860,723 + Ga0059261_0818 0.56 +0.8 860,724 - Ga0059261_0818 0.57 -1.2 860,724 - Ga0059261_0818 0.57 +0.4 860,724 - Ga0059261_0818 0.57 -1.0 860,724 - Ga0059261_0818 0.57 +1.0 860,724 - Ga0059261_0818 0.57 +2.1 860,724 - Ga0059261_0818 0.57 +0.3 860,724 - Ga0059261_0818 0.57 -0.3 860,724 - Ga0059261_0818 0.57 +1.9 860,724 - Ga0059261_0818 0.57 -0.7 860,724 - Ga0059261_0818 0.57 -2.0 860,724 - Ga0059261_0818 0.57 +0.7 860,724 - Ga0059261_0818 0.57 -1.3 860,725 + Ga0059261_0818 0.57 +3.7 860,725 + Ga0059261_0818 0.57 -0.1 860,725 + Ga0059261_0818 0.57 -2.6 860,725 + Ga0059261_0818 0.57 -0.6 860,725 + Ga0059261_0818 0.57 +0.6 860,726 - Ga0059261_0818 0.57 +2.8 860,726 - Ga0059261_0818 0.57 +0.8 860,859 - Ga0059261_0818 0.72 -1.4 860,859 - Ga0059261_0818 0.72 -1.0 860,861 - Ga0059261_0818 0.72 -0.0 860,861 - Ga0059261_0818 0.72 -1.5 860,930 + Ga0059261_0818 0.80 +1.8 860,930 + Ga0059261_0818 0.80 -1.9 860,931 - Ga0059261_0818 0.80 +1.7 860,931 - Ga0059261_0818 0.80 -1.6 861,174 + -0.7 861,189 + -1.4 862,218 + -2.6 862,305 - +0.3 862,305 - -1.2 862,316 + -0.7 862,316 + +2.0 862,317 - -0.9 862,317 - -0.1 862,317 - -0.3 862,317 - +0.9 862,365 + -0.0 862,366 - +0.4 862,366 - +0.2 862,440 + +0.9 862,448 + +0.7 862,449 - +0.6 862,449 - +0.6 862,449 - +0.3 862,449 - +0.8 862,483 - -0.2 862,483 - +0.7 862,498 - -1.1 862,498 - +0.8 862,498 - -2.2 862,926 + Ga0059261_0820 0.51 -0.3
Or see this region's nucleotide sequence