Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0760

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0759 and Ga0059261_0760 are separated by 10 nucleotidesGa0059261_0760 and Ga0059261_0761 are separated by 2 nucleotides Ga0059261_0759: Ga0059261_0759 - Beta-lactamase class C and other penicillin binding proteins, at 785,405 to 786,868 _0759 Ga0059261_0760: Ga0059261_0760 - Uncharacterized protein conserved in bacteria, at 786,879 to 787,226 _0760 Ga0059261_0761: Ga0059261_0761 - hypothetical protein, at 787,229 to 788,089 _0761 Position (kb) 786 787 788Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 786.001 kb on + strand, within Ga0059261_0759at 786.050 kb on + strand, within Ga0059261_0759at 786.051 kb on - strand, within Ga0059261_0759at 786.051 kb on - strand, within Ga0059261_0759at 786.287 kb on + strand, within Ga0059261_0759at 786.287 kb on + strand, within Ga0059261_0759at 786.428 kb on + strand, within Ga0059261_0759at 786.429 kb on - strand, within Ga0059261_0759at 786.626 kb on + strand, within Ga0059261_0759at 786.626 kb on + strand, within Ga0059261_0759at 786.626 kb on + strand, within Ga0059261_0759at 786.626 kb on + strand, within Ga0059261_0759at 786.626 kb on + strand, within Ga0059261_0759at 786.626 kb on + strand, within Ga0059261_0759at 786.626 kb on + strand, within Ga0059261_0759at 786.626 kb on + strand, within Ga0059261_0759at 786.626 kb on + strand, within Ga0059261_0759at 786.626 kb on + strand, within Ga0059261_0759at 786.626 kb on + strand, within Ga0059261_0759at 786.626 kb on + strand, within Ga0059261_0759at 786.626 kb on + strand, within Ga0059261_0759at 786.626 kb on + strand, within Ga0059261_0759at 786.626 kb on + strand, within Ga0059261_0759at 786.626 kb on + strand, within Ga0059261_0759at 786.627 kb on - strand, within Ga0059261_0759at 786.627 kb on - strand, within Ga0059261_0759at 786.627 kb on - strand, within Ga0059261_0759at 786.627 kb on - strand, within Ga0059261_0759at 786.627 kb on - strand, within Ga0059261_0759at 786.627 kb on - strand, within Ga0059261_0759at 786.627 kb on - strand, within Ga0059261_0759at 786.627 kb on - strand, within Ga0059261_0759at 786.627 kb on - strand, within Ga0059261_0759at 786.627 kb on - strand, within Ga0059261_0759at 786.627 kb on - strand, within Ga0059261_0759at 786.628 kb on + strand, within Ga0059261_0759at 786.628 kb on + strand, within Ga0059261_0759at 786.628 kb on + strand, within Ga0059261_0759at 786.628 kb on + strand, within Ga0059261_0759at 786.628 kb on + strand, within Ga0059261_0759at 786.628 kb on + strand, within Ga0059261_0759at 786.628 kb on + strand, within Ga0059261_0759at 786.629 kb on - strand, within Ga0059261_0759at 786.629 kb on - strand, within Ga0059261_0759at 786.629 kb on - strand, within Ga0059261_0759at 786.629 kb on - strand, within Ga0059261_0759at 786.725 kb on + strandat 786.725 kb on + strandat 786.725 kb on + strandat 786.725 kb on + strandat 786.725 kb on + strandat 786.725 kb on + strandat 786.725 kb on + strandat 786.726 kb on - strandat 786.726 kb on - strandat 786.726 kb on - strandat 786.726 kb on - strandat 786.726 kb on - strandat 786.726 kb on - strandat 786.726 kb on - strandat 787.017 kb on + strand, within Ga0059261_0760at 787.017 kb on + strand, within Ga0059261_0760at 787.017 kb on + strand, within Ga0059261_0760at 787.018 kb on - strand, within Ga0059261_0760at 787.018 kb on - strand, within Ga0059261_0760at 787.018 kb on - strand, within Ga0059261_0760at 787.018 kb on - strand, within Ga0059261_0760at 787.018 kb on - strand, within Ga0059261_0760at 787.018 kb on - strand, within Ga0059261_0760at 787.018 kb on - strand, within Ga0059261_0760at 787.095 kb on + strand, within Ga0059261_0760at 787.095 kb on + strand, within Ga0059261_0760at 787.095 kb on + strand, within Ga0059261_0760at 787.095 kb on + strand, within Ga0059261_0760at 787.095 kb on + strand, within Ga0059261_0760at 787.095 kb on + strand, within Ga0059261_0760at 787.095 kb on + strand, within Ga0059261_0760at 787.095 kb on + strand, within Ga0059261_0760at 787.096 kb on - strand, within Ga0059261_0760at 787.096 kb on - strand, within Ga0059261_0760at 787.096 kb on - strand, within Ga0059261_0760at 787.096 kb on - strand, within Ga0059261_0760at 787.096 kb on - strand, within Ga0059261_0760at 787.096 kb on - strand, within Ga0059261_0760at 787.472 kb on + strand, within Ga0059261_0761at 787.472 kb on + strand, within Ga0059261_0761at 787.472 kb on + strand, within Ga0059261_0761at 787.472 kb on + strand, within Ga0059261_0761at 787.472 kb on + strand, within Ga0059261_0761at 787.472 kb on + strand, within Ga0059261_0761at 787.472 kb on + strand, within Ga0059261_0761at 787.472 kb on + strand, within Ga0059261_0761at 787.473 kb on - strand, within Ga0059261_0761at 787.473 kb on - strand, within Ga0059261_0761at 787.473 kb on - strand, within Ga0059261_0761at 787.473 kb on - strand, within Ga0059261_0761at 787.473 kb on - strand, within Ga0059261_0761at 787.473 kb on - strand, within Ga0059261_0761at 787.473 kb on - strand, within Ga0059261_0761at 787.596 kb on - strand, within Ga0059261_0761at 787.596 kb on - strand, within Ga0059261_0761at 787.694 kb on + strand, within Ga0059261_0761at 787.694 kb on + strand, within Ga0059261_0761at 787.694 kb on + strand, within Ga0059261_0761at 787.694 kb on + strand, within Ga0059261_0761at 787.695 kb on - strand, within Ga0059261_0761at 787.695 kb on - strand, within Ga0059261_0761at 787.695 kb on - strand, within Ga0059261_0761at 787.829 kb on + strand, within Ga0059261_0761at 787.829 kb on + strand, within Ga0059261_0761at 787.829 kb on + strand, within Ga0059261_0761at 787.829 kb on + strand, within Ga0059261_0761at 787.829 kb on + strand, within Ga0059261_0761at 787.830 kb on - strand, within Ga0059261_0761at 787.830 kb on - strand, within Ga0059261_0761at 787.830 kb on - strand, within Ga0059261_0761at 787.830 kb on - strand, within Ga0059261_0761at 787.903 kb on + strand, within Ga0059261_0761at 787.903 kb on + strand, within Ga0059261_0761at 787.904 kb on - strand, within Ga0059261_0761at 788.087 kb on + strandat 788.087 kb on + strandat 788.087 kb on + strandat 788.088 kb on - strandat 788.088 kb on - strandat 788.088 kb on - strandat 788.088 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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786,001 + Ga0059261_0759 0.41 +1.0
786,050 + Ga0059261_0759 0.44 -0.0
786,051 - Ga0059261_0759 0.44 +1.3
786,051 - Ga0059261_0759 0.44 +0.6
786,287 + Ga0059261_0759 0.60 +0.8
786,287 + Ga0059261_0759 0.60 +1.6
786,428 + Ga0059261_0759 0.70 -0.4
786,429 - Ga0059261_0759 0.70 -0.9
786,626 + Ga0059261_0759 0.83 -1.7
786,626 + Ga0059261_0759 0.83 -2.6
786,626 + Ga0059261_0759 0.83 -0.7
786,626 + Ga0059261_0759 0.83 -1.3
786,626 + Ga0059261_0759 0.83 +0.5
786,626 + Ga0059261_0759 0.83 +0.0
786,626 + Ga0059261_0759 0.83 -0.4
786,626 + Ga0059261_0759 0.83 +0.3
786,626 + Ga0059261_0759 0.83 -0.9
786,626 + Ga0059261_0759 0.83 -0.0
786,626 + Ga0059261_0759 0.83 +1.4
786,626 + Ga0059261_0759 0.83 -1.2
786,626 + Ga0059261_0759 0.83 +0.3
786,626 + Ga0059261_0759 0.83 +1.2
786,626 + Ga0059261_0759 0.83 -1.9
786,626 + Ga0059261_0759 0.83 +1.2
786,627 - Ga0059261_0759 0.83 +0.9
786,627 - Ga0059261_0759 0.83 +2.0
786,627 - Ga0059261_0759 0.83 -1.2
786,627 - Ga0059261_0759 0.83 +1.0
786,627 - Ga0059261_0759 0.83 -0.0
786,627 - Ga0059261_0759 0.83 -0.6
786,627 - Ga0059261_0759 0.83 -0.1
786,627 - Ga0059261_0759 0.83 -2.4
786,627 - Ga0059261_0759 0.83 +1.4
786,627 - Ga0059261_0759 0.83 +2.3
786,627 - Ga0059261_0759 0.83 -0.8
786,628 + Ga0059261_0759 0.84 +1.1
786,628 + Ga0059261_0759 0.84 +0.6
786,628 + Ga0059261_0759 0.84 -1.6
786,628 + Ga0059261_0759 0.84 -1.8
786,628 + Ga0059261_0759 0.84 -2.7
786,628 + Ga0059261_0759 0.84 +0.6
786,628 + Ga0059261_0759 0.84 +0.9
786,629 - Ga0059261_0759 0.84 +0.3
786,629 - Ga0059261_0759 0.84 -1.4
786,629 - Ga0059261_0759 0.84 -1.1
786,629 - Ga0059261_0759 0.84 +2.0
786,725 + +0.9
786,725 + +1.9
786,725 + +1.3
786,725 + +1.6
786,725 + -0.9
786,725 + +0.7
786,725 + -1.9
786,726 - +1.4
786,726 - -0.4
786,726 - -2.8
786,726 - -0.0
786,726 - +1.3
786,726 - -0.7
786,726 - -0.1
787,017 + Ga0059261_0760 0.40 +0.6
787,017 + Ga0059261_0760 0.40 +0.4
787,017 + Ga0059261_0760 0.40 -3.0
787,018 - Ga0059261_0760 0.40 -1.7
787,018 - Ga0059261_0760 0.40 +3.9
787,018 - Ga0059261_0760 0.40 +1.5
787,018 - Ga0059261_0760 0.40 -1.1
787,018 - Ga0059261_0760 0.40 -0.4
787,018 - Ga0059261_0760 0.40 +1.0
787,018 - Ga0059261_0760 0.40 -1.4
787,095 + Ga0059261_0760 0.62 +0.8
787,095 + Ga0059261_0760 0.62 +1.3
787,095 + Ga0059261_0760 0.62 -0.0
787,095 + Ga0059261_0760 0.62 +0.2
787,095 + Ga0059261_0760 0.62 -1.3
787,095 + Ga0059261_0760 0.62 +0.1
787,095 + Ga0059261_0760 0.62 -2.2
787,095 + Ga0059261_0760 0.62 -0.5
787,096 - Ga0059261_0760 0.62 +0.9
787,096 - Ga0059261_0760 0.62 -1.9
787,096 - Ga0059261_0760 0.62 -0.3
787,096 - Ga0059261_0760 0.62 +0.1
787,096 - Ga0059261_0760 0.62 +4.1
787,096 - Ga0059261_0760 0.62 +4.9
787,472 + Ga0059261_0761 0.28 -1.3
787,472 + Ga0059261_0761 0.28 +0.8
787,472 + Ga0059261_0761 0.28 -1.9
787,472 + Ga0059261_0761 0.28 -1.3
787,472 + Ga0059261_0761 0.28 -0.5
787,472 + Ga0059261_0761 0.28 +0.3
787,472 + Ga0059261_0761 0.28 -0.4
787,472 + Ga0059261_0761 0.28 +1.9
787,473 - Ga0059261_0761 0.28 +1.1
787,473 - Ga0059261_0761 0.28 +2.3
787,473 - Ga0059261_0761 0.28 -0.3
787,473 - Ga0059261_0761 0.28 -1.7
787,473 - Ga0059261_0761 0.28 -0.4
787,473 - Ga0059261_0761 0.28 +0.1
787,473 - Ga0059261_0761 0.28 +0.5
787,596 - Ga0059261_0761 0.43 -1.0
787,596 - Ga0059261_0761 0.43 -0.5
787,694 + Ga0059261_0761 0.54 +2.4
787,694 + Ga0059261_0761 0.54 -1.2
787,694 + Ga0059261_0761 0.54 +4.1
787,694 + Ga0059261_0761 0.54 +0.8
787,695 - Ga0059261_0761 0.54 +0.2
787,695 - Ga0059261_0761 0.54 +0.9
787,695 - Ga0059261_0761 0.54 -0.2
787,829 + Ga0059261_0761 0.70 -2.5
787,829 + Ga0059261_0761 0.70 -1.3
787,829 + Ga0059261_0761 0.70 +0.7
787,829 + Ga0059261_0761 0.70 +1.0
787,829 + Ga0059261_0761 0.70 +2.7
787,830 - Ga0059261_0761 0.70 +1.2
787,830 - Ga0059261_0761 0.70 -1.4
787,830 - Ga0059261_0761 0.70 -1.4
787,830 - Ga0059261_0761 0.70 -0.9
787,903 + Ga0059261_0761 0.78 +0.4
787,903 + Ga0059261_0761 0.78 -0.7
787,904 - Ga0059261_0761 0.78 +0.3
788,087 + +1.3
788,087 + +0.8
788,087 + +0.1
788,088 - -1.3
788,088 - -0.0
788,088 - +1.2
788,088 - -0.4

Or see this region's nucleotide sequence