Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0546 and Ga0059261_0547 are separated by 20 nucleotides Ga0059261_0547 and Ga0059261_0548 overlap by 4 nucleotides Ga0059261_0548 and Ga0059261_0549 overlap by 4 nucleotides
Ga0059261_0546: Ga0059261_0546 - Choline dehydrogenase and related flavoproteins, at 560,742 to 562,424
_0546
Ga0059261_0547: Ga0059261_0547 - Sugar phosphate isomerases/epimerases, at 562,445 to 563,275
_0547
Ga0059261_0548: Ga0059261_0548 - Gluconate 2-dehydrogenase subunit 3, at 563,272 to 563,841
_0548
Ga0059261_0549: Ga0059261_0549 - Domain of Unknown Function (DUF1080), at 563,838 to 564,653
_0549
Position (kb) 562
563
564 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 561.619 kb on + strand, within Ga0059261_0546 at 561.619 kb on + strand at 561.620 kb on - strand, within Ga0059261_0546 at 561.620 kb on - strand, within Ga0059261_0546 at 561.620 kb on - strand, within Ga0059261_0546 at 561.709 kb on + strand, within Ga0059261_0546 at 561.710 kb on - strand, within Ga0059261_0546 at 561.710 kb on - strand, within Ga0059261_0546 at 561.710 kb on - strand, within Ga0059261_0546 at 561.710 kb on - strand, within Ga0059261_0546 at 561.944 kb on + strand, within Ga0059261_0546 at 561.945 kb on - strand, within Ga0059261_0546 at 561.946 kb on + strand, within Ga0059261_0546 at 561.946 kb on + strand, within Ga0059261_0546 at 561.946 kb on + strand, within Ga0059261_0546 at 561.946 kb on + strand, within Ga0059261_0546 at 561.946 kb on + strand, within Ga0059261_0546 at 561.946 kb on + strand, within Ga0059261_0546 at 561.946 kb on + strand, within Ga0059261_0546 at 561.946 kb on + strand, within Ga0059261_0546 at 561.946 kb on + strand, within Ga0059261_0546 at 561.946 kb on + strand, within Ga0059261_0546 at 561.946 kb on + strand, within Ga0059261_0546 at 561.946 kb on + strand, within Ga0059261_0546 at 561.946 kb on + strand, within Ga0059261_0546 at 561.947 kb on - strand, within Ga0059261_0546 at 561.947 kb on - strand, within Ga0059261_0546 at 561.947 kb on - strand, within Ga0059261_0546 at 561.947 kb on - strand, within Ga0059261_0546 at 561.947 kb on - strand, within Ga0059261_0546 at 561.947 kb on - strand, within Ga0059261_0546 at 561.947 kb on - strand, within Ga0059261_0546 at 561.947 kb on - strand, within Ga0059261_0546 at 561.947 kb on - strand, within Ga0059261_0546 at 561.947 kb on - strand, within Ga0059261_0546 at 561.947 kb on - strand, within Ga0059261_0546 at 561.947 kb on - strand, within Ga0059261_0546 at 561.947 kb on - strand, within Ga0059261_0546 at 561.947 kb on - strand, within Ga0059261_0546 at 561.947 kb on - strand, within Ga0059261_0546 at 561.947 kb on - strand, within Ga0059261_0546 at 561.947 kb on - strand, within Ga0059261_0546 at 561.986 kb on - strand, within Ga0059261_0546 at 562.138 kb on + strand at 562.139 kb on - strand at 562.162 kb on + strand, within Ga0059261_0546 at 562.163 kb on - strand, within Ga0059261_0546 at 562.163 kb on - strand, within Ga0059261_0546 at 562.163 kb on - strand at 562.163 kb on - strand, within Ga0059261_0546 at 562.189 kb on + strand, within Ga0059261_0546 at 562.210 kb on + strand, within Ga0059261_0546 at 562.210 kb on + strand, within Ga0059261_0546 at 562.211 kb on - strand, within Ga0059261_0546 at 562.261 kb on + strand at 562.262 kb on - strand at 562.262 kb on - strand at 562.262 kb on - strand at 562.262 kb on - strand at 562.279 kb on + strand at 562.279 kb on + strand at 562.279 kb on + strand at 562.280 kb on - strand at 562.280 kb on - strand at 562.280 kb on - strand at 562.280 kb on - strand at 562.280 kb on - strand at 562.280 kb on - strand at 562.280 kb on - strand at 562.285 kb on + strand at 562.285 kb on + strand at 562.285 kb on + strand at 562.285 kb on + strand at 562.285 kb on + strand at 562.285 kb on + strand at 562.285 kb on + strand at 562.285 kb on + strand at 562.286 kb on - strand at 562.286 kb on - strand at 562.286 kb on - strand at 562.286 kb on - strand at 562.286 kb on - strand at 562.424 kb on + strand at 562.432 kb on + strand at 562.432 kb on + strand at 562.432 kb on + strand at 562.432 kb on + strand at 562.432 kb on + strand at 562.433 kb on - strand at 562.433 kb on - strand at 562.441 kb on - strand at 562.441 kb on - strand at 562.441 kb on - strand at 562.498 kb on - strand at 562.498 kb on - strand at 562.527 kb on + strand at 562.527 kb on + strand at 562.528 kb on - strand, within Ga0059261_0547 at 562.528 kb on - strand, within Ga0059261_0547 at 562.528 kb on - strand, within Ga0059261_0547 at 562.528 kb on - strand, within Ga0059261_0547 at 562.528 kb on - strand, within Ga0059261_0547 at 562.624 kb on + strand, within Ga0059261_0547 at 562.624 kb on + strand, within Ga0059261_0547 at 562.624 kb on + strand, within Ga0059261_0547 at 562.624 kb on + strand at 562.625 kb on - strand, within Ga0059261_0547 at 562.638 kb on + strand, within Ga0059261_0547 at 562.638 kb on + strand, within Ga0059261_0547 at 562.638 kb on + strand, within Ga0059261_0547 at 562.638 kb on + strand, within Ga0059261_0547 at 562.638 kb on + strand, within Ga0059261_0547 at 562.639 kb on - strand, within Ga0059261_0547 at 562.644 kb on + strand, within Ga0059261_0547 at 562.644 kb on + strand, within Ga0059261_0547 at 562.644 kb on + strand, within Ga0059261_0547 at 562.644 kb on + strand, within Ga0059261_0547 at 562.644 kb on + strand, within Ga0059261_0547 at 562.644 kb on + strand, within Ga0059261_0547 at 562.645 kb on - strand, within Ga0059261_0547 at 562.645 kb on - strand, within Ga0059261_0547 at 562.645 kb on - strand, within Ga0059261_0547 at 562.645 kb on - strand, within Ga0059261_0547 at 562.917 kb on + strand, within Ga0059261_0547 at 562.917 kb on + strand, within Ga0059261_0547 at 562.917 kb on + strand, within Ga0059261_0547 at 562.917 kb on + strand, within Ga0059261_0547 at 562.917 kb on + strand, within Ga0059261_0547 at 562.917 kb on + strand, within Ga0059261_0547 at 562.917 kb on + strand, within Ga0059261_0547 at 562.917 kb on + strand, within Ga0059261_0547 at 562.918 kb on - strand, within Ga0059261_0547 at 562.918 kb on - strand, within Ga0059261_0547 at 562.918 kb on - strand, within Ga0059261_0547 at 562.918 kb on - strand, within Ga0059261_0547 at 562.918 kb on - strand, within Ga0059261_0547 at 562.918 kb on - strand, within Ga0059261_0547 at 562.996 kb on - strand, within Ga0059261_0547 at 563.073 kb on + strand, within Ga0059261_0547 at 563.074 kb on - strand, within Ga0059261_0547 at 563.074 kb on - strand, within Ga0059261_0547 at 563.074 kb on - strand, within Ga0059261_0547 at 563.169 kb on + strand, within Ga0059261_0547 at 563.169 kb on + strand, within Ga0059261_0547 at 563.169 kb on + strand, within Ga0059261_0547 at 563.169 kb on + strand, within Ga0059261_0547 at 563.169 kb on + strand, within Ga0059261_0547 at 563.170 kb on - strand, within Ga0059261_0547 at 563.282 kb on + strand at 563.282 kb on + strand at 563.282 kb on + strand at 563.283 kb on - strand at 563.283 kb on - strand at 563.283 kb on - strand at 563.283 kb on - strand at 563.283 kb on - strand at 563.319 kb on + strand at 563.321 kb on + strand at 563.321 kb on + strand at 563.321 kb on + strand at 563.321 kb on + strand at 563.342 kb on + strand, within Ga0059261_0548 at 563.342 kb on + strand, within Ga0059261_0548 at 563.342 kb on + strand, within Ga0059261_0548 at 563.343 kb on - strand, within Ga0059261_0548 at 563.378 kb on + strand, within Ga0059261_0548 at 563.378 kb on + strand, within Ga0059261_0548 at 563.378 kb on + strand, within Ga0059261_0548 at 563.378 kb on + strand, within Ga0059261_0548 at 563.378 kb on + strand, within Ga0059261_0548 at 563.378 kb on + strand, within Ga0059261_0548 at 563.379 kb on - strand, within Ga0059261_0548 at 563.379 kb on - strand, within Ga0059261_0548 at 563.379 kb on - strand, within Ga0059261_0548 at 563.379 kb on - strand, within Ga0059261_0548 at 563.379 kb on - strand, within Ga0059261_0548 at 563.379 kb on - strand, within Ga0059261_0548 at 563.379 kb on - strand, within Ga0059261_0548 at 563.379 kb on - strand, within Ga0059261_0548 at 563.379 kb on - strand, within Ga0059261_0548 at 563.379 kb on - strand, within Ga0059261_0548 at 563.379 kb on - strand, within Ga0059261_0548 at 563.381 kb on + strand, within Ga0059261_0548 at 563.381 kb on + strand, within Ga0059261_0548 at 563.637 kb on + strand, within Ga0059261_0548 at 563.638 kb on - strand, within Ga0059261_0548 at 563.783 kb on + strand, within Ga0059261_0548 at 563.783 kb on + strand, within Ga0059261_0548 at 563.784 kb on - strand, within Ga0059261_0548 at 563.892 kb on + strand at 563.969 kb on - strand, within Ga0059261_0549 at 564.052 kb on + strand, within Ga0059261_0549 at 564.052 kb on + strand, within Ga0059261_0549 at 564.052 kb on + strand, within Ga0059261_0549 at 564.102 kb on + strand, within Ga0059261_0549 at 564.102 kb on + strand, within Ga0059261_0549 at 564.102 kb on + strand, within Ga0059261_0549 at 564.102 kb on + strand, within Ga0059261_0549 at 564.103 kb on - strand, within Ga0059261_0549 at 564.103 kb on - strand, within Ga0059261_0549 at 564.103 kb on - strand, within Ga0059261_0549 at 564.112 kb on + strand, within Ga0059261_0549 at 564.112 kb on + strand, within Ga0059261_0549 at 564.113 kb on - strand, within Ga0059261_0549 at 564.196 kb on + strand, within Ga0059261_0549 at 564.196 kb on + strand, within Ga0059261_0549 at 564.196 kb on + strand, within Ga0059261_0549 at 564.196 kb on + strand, within Ga0059261_0549 at 564.196 kb on + strand, within Ga0059261_0549 at 564.196 kb on + strand, within Ga0059261_0549 at 564.197 kb on - strand, within Ga0059261_0549 at 564.197 kb on - strand, within Ga0059261_0549 at 564.197 kb on - strand, within Ga0059261_0549 at 564.197 kb on - strand, within Ga0059261_0549 at 564.197 kb on - strand, within Ga0059261_0549 at 564.197 kb on - strand, within Ga0059261_0549 at 564.235 kb on + strand, within Ga0059261_0549 at 564.235 kb on + strand, within Ga0059261_0549 at 564.260 kb on + strand, within Ga0059261_0549 at 564.260 kb on + strand, within Ga0059261_0549
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 561,619 + Ga0059261_0546 0.52 +0.9 561,619 + +0.6 561,620 - Ga0059261_0546 0.52 +0.5 561,620 - Ga0059261_0546 0.52 +0.5 561,620 - Ga0059261_0546 0.52 -1.6 561,709 + Ga0059261_0546 0.57 +0.7 561,710 - Ga0059261_0546 0.58 -1.0 561,710 - Ga0059261_0546 0.58 +2.6 561,710 - Ga0059261_0546 0.58 -0.6 561,710 - Ga0059261_0546 0.58 +2.8 561,944 + Ga0059261_0546 0.71 +0.4 561,945 - Ga0059261_0546 0.71 -2.0 561,946 + Ga0059261_0546 0.72 -1.2 561,946 + Ga0059261_0546 0.72 -1.1 561,946 + Ga0059261_0546 0.72 +0.6 561,946 + Ga0059261_0546 0.72 -1.7 561,946 + Ga0059261_0546 0.72 -0.3 561,946 + Ga0059261_0546 0.72 +0.8 561,946 + Ga0059261_0546 0.72 -1.4 561,946 + Ga0059261_0546 0.72 +0.2 561,946 + Ga0059261_0546 0.72 +0.2 561,946 + Ga0059261_0546 0.72 -1.9 561,946 + Ga0059261_0546 0.72 -0.3 561,946 + Ga0059261_0546 0.72 +1.1 561,946 + Ga0059261_0546 0.72 +1.4 561,947 - Ga0059261_0546 0.72 +0.1 561,947 - Ga0059261_0546 0.72 -1.0 561,947 - Ga0059261_0546 0.72 +0.2 561,947 - Ga0059261_0546 0.72 +1.5 561,947 - Ga0059261_0546 0.72 +0.9 561,947 - Ga0059261_0546 0.72 -1.2 561,947 - Ga0059261_0546 0.72 -1.6 561,947 - Ga0059261_0546 0.72 +0.7 561,947 - Ga0059261_0546 0.72 -1.5 561,947 - Ga0059261_0546 0.72 +0.4 561,947 - Ga0059261_0546 0.72 +0.8 561,947 - Ga0059261_0546 0.72 -0.4 561,947 - Ga0059261_0546 0.72 +0.5 561,947 - Ga0059261_0546 0.72 -0.3 561,947 - Ga0059261_0546 0.72 -1.6 561,947 - Ga0059261_0546 0.72 -0.4 561,947 - Ga0059261_0546 0.72 +2.1 561,986 - Ga0059261_0546 0.74 -0.2 562,138 + +1.2 562,139 - +1.2 562,162 + Ga0059261_0546 0.84 +0.5 562,163 - Ga0059261_0546 0.84 +1.3 562,163 - Ga0059261_0546 0.84 +3.1 562,163 - +0.2 562,163 - Ga0059261_0546 0.84 +1.9 562,189 + Ga0059261_0546 0.86 -0.4 562,210 + Ga0059261_0546 0.87 -0.1 562,210 + Ga0059261_0546 0.87 +0.3 562,211 - Ga0059261_0546 0.87 -0.8 562,261 + +0.6 562,262 - +0.1 562,262 - +0.5 562,262 - -0.8 562,262 - +2.2 562,279 + +0.4 562,279 + -2.3 562,279 + -0.8 562,280 - -1.4 562,280 - +0.3 562,280 - +1.0 562,280 - +0.2 562,280 - -0.1 562,280 - +0.0 562,280 - -0.6 562,285 + +2.0 562,285 + -1.1 562,285 + +0.2 562,285 + +1.3 562,285 + +1.2 562,285 + -1.0 562,285 + +0.5 562,285 + -1.4 562,286 - -0.6 562,286 - +0.4 562,286 - -1.3 562,286 - +0.1 562,286 - +2.9 562,424 + +1.2 562,432 + -0.7 562,432 + +2.2 562,432 + +1.1 562,432 + +2.0 562,432 + +3.5 562,433 - +0.6 562,433 - +1.7 562,441 - +0.2 562,441 - +0.6 562,441 - +0.1 562,498 - +1.2 562,498 - -2.0 562,527 + -0.9 562,527 + +1.5 562,528 - Ga0059261_0547 0.10 -0.2 562,528 - Ga0059261_0547 0.10 -0.8 562,528 - Ga0059261_0547 0.10 +0.3 562,528 - Ga0059261_0547 0.10 +1.4 562,528 - Ga0059261_0547 0.10 -0.8 562,624 + Ga0059261_0547 0.22 -1.6 562,624 + Ga0059261_0547 0.22 +1.0 562,624 + Ga0059261_0547 0.22 +0.0 562,624 + +1.2 562,625 - Ga0059261_0547 0.22 -1.6 562,638 + Ga0059261_0547 0.23 -0.7 562,638 + Ga0059261_0547 0.23 +0.4 562,638 + Ga0059261_0547 0.23 -1.0 562,638 + Ga0059261_0547 0.23 -0.3 562,638 + Ga0059261_0547 0.23 -0.4 562,639 - Ga0059261_0547 0.23 -1.6 562,644 + Ga0059261_0547 0.24 -0.9 562,644 + Ga0059261_0547 0.24 +1.3 562,644 + Ga0059261_0547 0.24 -0.4 562,644 + Ga0059261_0547 0.24 +1.2 562,644 + Ga0059261_0547 0.24 +0.4 562,644 + Ga0059261_0547 0.24 +0.4 562,645 - Ga0059261_0547 0.24 -0.4 562,645 - Ga0059261_0547 0.24 -0.5 562,645 - Ga0059261_0547 0.24 -1.8 562,645 - Ga0059261_0547 0.24 -1.7 562,917 + Ga0059261_0547 0.57 -0.6 562,917 + Ga0059261_0547 0.57 +0.6 562,917 + Ga0059261_0547 0.57 +2.0 562,917 + Ga0059261_0547 0.57 +2.0 562,917 + Ga0059261_0547 0.57 -1.0 562,917 + Ga0059261_0547 0.57 +0.6 562,917 + Ga0059261_0547 0.57 -0.0 562,917 + Ga0059261_0547 0.57 +0.9 562,918 - Ga0059261_0547 0.57 +2.5 562,918 - Ga0059261_0547 0.57 -2.1 562,918 - Ga0059261_0547 0.57 -1.4 562,918 - Ga0059261_0547 0.57 +1.6 562,918 - Ga0059261_0547 0.57 -1.1 562,918 - Ga0059261_0547 0.57 -1.4 562,996 - Ga0059261_0547 0.66 +0.4 563,073 + Ga0059261_0547 0.76 -1.4 563,074 - Ga0059261_0547 0.76 +1.6 563,074 - Ga0059261_0547 0.76 -1.8 563,074 - Ga0059261_0547 0.76 -0.1 563,169 + Ga0059261_0547 0.87 -1.5 563,169 + Ga0059261_0547 0.87 -0.8 563,169 + Ga0059261_0547 0.87 -0.6 563,169 + Ga0059261_0547 0.87 -0.5 563,169 + Ga0059261_0547 0.87 -1.9 563,170 - Ga0059261_0547 0.87 -2.3 563,282 + +1.2 563,282 + +0.2 563,282 + -0.4 563,283 - +3.1 563,283 - -1.3 563,283 - +0.6 563,283 - -1.8 563,283 - +0.6 563,319 + -1.4 563,321 + +0.2 563,321 + -0.4 563,321 + -1.0 563,321 + +1.5 563,342 + Ga0059261_0548 0.12 +2.2 563,342 + Ga0059261_0548 0.12 -2.9 563,342 + Ga0059261_0548 0.12 -1.7 563,343 - Ga0059261_0548 0.12 +0.9 563,378 + Ga0059261_0548 0.19 +2.5 563,378 + Ga0059261_0548 0.19 +1.5 563,378 + Ga0059261_0548 0.19 +1.5 563,378 + Ga0059261_0548 0.19 -1.3 563,378 + Ga0059261_0548 0.19 +2.5 563,378 + Ga0059261_0548 0.19 +0.4 563,379 - Ga0059261_0548 0.19 -1.4 563,379 - Ga0059261_0548 0.19 +5.2 563,379 - Ga0059261_0548 0.19 -1.4 563,379 - Ga0059261_0548 0.19 +1.8 563,379 - Ga0059261_0548 0.19 +0.7 563,379 - Ga0059261_0548 0.19 +0.6 563,379 - Ga0059261_0548 0.19 -1.0 563,379 - Ga0059261_0548 0.19 -0.7 563,379 - Ga0059261_0548 0.19 -0.7 563,379 - Ga0059261_0548 0.19 +1.7 563,379 - Ga0059261_0548 0.19 +2.8 563,381 + Ga0059261_0548 0.19 +2.9 563,381 + Ga0059261_0548 0.19 +1.4 563,637 + Ga0059261_0548 0.64 +0.5 563,638 - Ga0059261_0548 0.64 +0.2 563,783 + Ga0059261_0548 0.90 +0.2 563,783 + Ga0059261_0548 0.90 -1.0 563,784 - Ga0059261_0548 0.90 -0.1 563,892 + -1.3 563,969 - Ga0059261_0549 0.16 -1.0 564,052 + Ga0059261_0549 0.26 -0.8 564,052 + Ga0059261_0549 0.26 -2.3 564,052 + Ga0059261_0549 0.26 -1.7 564,102 + Ga0059261_0549 0.32 -2.9 564,102 + Ga0059261_0549 0.32 -1.0 564,102 + Ga0059261_0549 0.32 -0.9 564,102 + Ga0059261_0549 0.32 -0.1 564,103 - Ga0059261_0549 0.32 -1.6 564,103 - Ga0059261_0549 0.32 -1.8 564,103 - Ga0059261_0549 0.32 -1.3 564,112 + Ga0059261_0549 0.34 +1.7 564,112 + Ga0059261_0549 0.34 +2.3 564,113 - Ga0059261_0549 0.34 -1.4 564,196 + Ga0059261_0549 0.44 -2.0 564,196 + Ga0059261_0549 0.44 -2.0 564,196 + Ga0059261_0549 0.44 +0.9 564,196 + Ga0059261_0549 0.44 -0.6 564,196 + Ga0059261_0549 0.44 +1.8 564,196 + Ga0059261_0549 0.44 +1.2 564,197 - Ga0059261_0549 0.44 -0.3 564,197 - Ga0059261_0549 0.44 +2.1 564,197 - Ga0059261_0549 0.44 -1.1 564,197 - Ga0059261_0549 0.44 -0.2 564,197 - Ga0059261_0549 0.44 +0.6 564,197 - Ga0059261_0549 0.44 +1.0 564,235 + Ga0059261_0549 0.49 +0.9 564,235 + Ga0059261_0549 0.49 -1.6 564,260 + Ga0059261_0549 0.52 +0.2 564,260 + Ga0059261_0549 0.52 -0.7
Or see this region's nucleotide sequence