Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0534 and Ga0059261_0535 are separated by 63 nucleotides Ga0059261_0535 and Ga0059261_0536 are separated by 57 nucleotides Ga0059261_0536 and Ga0059261_0537 are separated by 50 nucleotides
Ga0059261_0534: Ga0059261_0534 - TonB dependent receptor/Secretin and TonB N terminus short domain/TonB-dependent Receptor Plug Domain, at 536,348 to 539,530
_0534
Ga0059261_0535: Ga0059261_0535 - PAP2 superfamily, at 539,594 to 540,409
_0535
Ga0059261_0536: Ga0059261_0536 - transcriptional regulator, TetR family, at 540,467 to 541,063
_0536
Ga0059261_0537: Ga0059261_0537 - Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit, at 541,114 to 542,295
_0537
Position (kb) 540
541
542 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 539.480 kb on + strand at 539.480 kb on + strand at 539.481 kb on - strand at 539.481 kb on - strand at 539.481 kb on - strand at 539.481 kb on - strand at 539.481 kb on - strand at 539.498 kb on + strand at 539.504 kb on + strand at 539.709 kb on + strand, within Ga0059261_0535 at 539.714 kb on + strand, within Ga0059261_0535 at 539.714 kb on + strand, within Ga0059261_0535 at 539.714 kb on + strand, within Ga0059261_0535 at 539.715 kb on - strand, within Ga0059261_0535 at 539.715 kb on - strand, within Ga0059261_0535 at 539.715 kb on - strand, within Ga0059261_0535 at 539.739 kb on - strand, within Ga0059261_0535 at 539.873 kb on + strand, within Ga0059261_0535 at 540.014 kb on + strand, within Ga0059261_0535 at 540.023 kb on + strand, within Ga0059261_0535 at 540.023 kb on + strand, within Ga0059261_0535 at 540.024 kb on - strand, within Ga0059261_0535 at 540.096 kb on - strand, within Ga0059261_0535 at 540.116 kb on + strand, within Ga0059261_0535 at 540.116 kb on + strand, within Ga0059261_0535 at 540.116 kb on + strand, within Ga0059261_0535 at 540.117 kb on - strand, within Ga0059261_0535 at 540.117 kb on - strand, within Ga0059261_0535 at 540.117 kb on - strand, within Ga0059261_0535 at 540.117 kb on - strand, within Ga0059261_0535 at 540.117 kb on - strand, within Ga0059261_0535 at 540.194 kb on + strand, within Ga0059261_0535 at 540.194 kb on + strand, within Ga0059261_0535 at 540.194 kb on + strand, within Ga0059261_0535 at 540.194 kb on + strand, within Ga0059261_0535 at 540.194 kb on + strand, within Ga0059261_0535 at 540.195 kb on - strand, within Ga0059261_0535 at 540.222 kb on - strand, within Ga0059261_0535 at 540.333 kb on - strand at 540.333 kb on - strand at 540.666 kb on + strand, within Ga0059261_0536 at 540.666 kb on + strand, within Ga0059261_0536 at 540.666 kb on + strand, within Ga0059261_0536 at 540.667 kb on - strand, within Ga0059261_0536 at 540.667 kb on - strand, within Ga0059261_0536 at 540.667 kb on - strand, within Ga0059261_0536 at 540.667 kb on - strand, within Ga0059261_0536 at 540.667 kb on - strand, within Ga0059261_0536 at 540.783 kb on + strand, within Ga0059261_0536 at 540.783 kb on + strand, within Ga0059261_0536 at 540.783 kb on + strand, within Ga0059261_0536 at 540.784 kb on - strand, within Ga0059261_0536 at 540.784 kb on - strand, within Ga0059261_0536 at 540.784 kb on - strand, within Ga0059261_0536 at 540.784 kb on - strand, within Ga0059261_0536 at 540.784 kb on - strand, within Ga0059261_0536 at 540.784 kb on - strand, within Ga0059261_0536 at 540.784 kb on - strand, within Ga0059261_0536 at 540.824 kb on + strand, within Ga0059261_0536 at 540.870 kb on + strand, within Ga0059261_0536 at 540.871 kb on - strand, within Ga0059261_0536 at 540.871 kb on - strand, within Ga0059261_0536 at 540.871 kb on - strand, within Ga0059261_0536 at 540.871 kb on - strand, within Ga0059261_0536 at 541.186 kb on + strand at 541.186 kb on + strand at 541.187 kb on - strand at 541.187 kb on - strand at 541.187 kb on - strand at 541.432 kb on + strand, within Ga0059261_0537 at 541.433 kb on - strand, within Ga0059261_0537 at 541.447 kb on + strand, within Ga0059261_0537 at 541.447 kb on + strand, within Ga0059261_0537 at 541.447 kb on + strand, within Ga0059261_0537 at 541.447 kb on + strand, within Ga0059261_0537 at 541.448 kb on - strand, within Ga0059261_0537 at 541.448 kb on - strand, within Ga0059261_0537 at 541.493 kb on - strand, within Ga0059261_0537 at 541.493 kb on - strand, within Ga0059261_0537 at 541.616 kb on - strand, within Ga0059261_0537 at 541.616 kb on - strand, within Ga0059261_0537 at 541.718 kb on - strand, within Ga0059261_0537 at 541.718 kb on - strand, within Ga0059261_0537 at 541.780 kb on + strand, within Ga0059261_0537 at 541.780 kb on + strand, within Ga0059261_0537 at 541.822 kb on + strand, within Ga0059261_0537 at 541.822 kb on + strand, within Ga0059261_0537 at 541.864 kb on + strand, within Ga0059261_0537 at 541.865 kb on - strand, within Ga0059261_0537 at 541.865 kb on - strand, within Ga0059261_0537 at 541.924 kb on + strand, within Ga0059261_0537 at 541.924 kb on + strand, within Ga0059261_0537 at 541.924 kb on + strand, within Ga0059261_0537 at 541.924 kb on + strand, within Ga0059261_0537 at 541.924 kb on + strand, within Ga0059261_0537 at 541.927 kb on + strand, within Ga0059261_0537 at 541.928 kb on - strand, within Ga0059261_0537 at 541.928 kb on - strand, within Ga0059261_0537 at 541.960 kb on + strand, within Ga0059261_0537 at 541.960 kb on + strand, within Ga0059261_0537 at 541.960 kb on + strand, within Ga0059261_0537 at 541.960 kb on + strand, within Ga0059261_0537 at 541.960 kb on + strand, within Ga0059261_0537 at 541.960 kb on + strand, within Ga0059261_0537 at 541.960 kb on + strand, within Ga0059261_0537 at 541.960 kb on + strand, within Ga0059261_0537 at 541.961 kb on - strand, within Ga0059261_0537 at 541.961 kb on - strand, within Ga0059261_0537 at 541.961 kb on - strand, within Ga0059261_0537 at 541.961 kb on - strand, within Ga0059261_0537 at 541.961 kb on - strand, within Ga0059261_0537 at 541.961 kb on - strand, within Ga0059261_0537 at 541.961 kb on - strand, within Ga0059261_0537 at 541.961 kb on - strand, within Ga0059261_0537 at 541.961 kb on - strand, within Ga0059261_0537
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 539,480 + -1.6 539,480 + -0.7 539,481 - +2.7 539,481 - -0.1 539,481 - +0.2 539,481 - -0.1 539,481 - +0.2 539,498 + -0.4 539,504 + -0.9 539,709 + Ga0059261_0535 0.14 -1.3 539,714 + Ga0059261_0535 0.15 -0.4 539,714 + Ga0059261_0535 0.15 -0.5 539,714 + Ga0059261_0535 0.15 -0.8 539,715 - Ga0059261_0535 0.15 -1.5 539,715 - Ga0059261_0535 0.15 +0.0 539,715 - Ga0059261_0535 0.15 -3.3 539,739 - Ga0059261_0535 0.18 -2.0 539,873 + Ga0059261_0535 0.34 +0.2 540,014 + Ga0059261_0535 0.51 +0.3 540,023 + Ga0059261_0535 0.53 -0.4 540,023 + Ga0059261_0535 0.53 -0.2 540,024 - Ga0059261_0535 0.53 -1.1 540,096 - Ga0059261_0535 0.62 -1.6 540,116 + Ga0059261_0535 0.64 -0.2 540,116 + Ga0059261_0535 0.64 +1.6 540,116 + Ga0059261_0535 0.64 -0.0 540,117 - Ga0059261_0535 0.64 -0.7 540,117 - Ga0059261_0535 0.64 -1.4 540,117 - Ga0059261_0535 0.64 -1.5 540,117 - Ga0059261_0535 0.64 -0.2 540,117 - Ga0059261_0535 0.64 -0.0 540,194 + Ga0059261_0535 0.74 -2.5 540,194 + Ga0059261_0535 0.74 -0.9 540,194 + Ga0059261_0535 0.74 -0.9 540,194 + Ga0059261_0535 0.74 +1.4 540,194 + Ga0059261_0535 0.74 -0.3 540,195 - Ga0059261_0535 0.74 +1.7 540,222 - Ga0059261_0535 0.77 -0.1 540,333 - -2.1 540,333 - -1.0 540,666 + Ga0059261_0536 0.33 -0.6 540,666 + Ga0059261_0536 0.33 +1.2 540,666 + Ga0059261_0536 0.33 -0.7 540,667 - Ga0059261_0536 0.34 +1.2 540,667 - Ga0059261_0536 0.34 -1.4 540,667 - Ga0059261_0536 0.34 -1.8 540,667 - Ga0059261_0536 0.34 -0.7 540,667 - Ga0059261_0536 0.34 +0.4 540,783 + Ga0059261_0536 0.53 +1.0 540,783 + Ga0059261_0536 0.53 -1.3 540,783 + Ga0059261_0536 0.53 -0.4 540,784 - Ga0059261_0536 0.53 -0.4 540,784 - Ga0059261_0536 0.53 +0.3 540,784 - Ga0059261_0536 0.53 +0.9 540,784 - Ga0059261_0536 0.53 -1.7 540,784 - Ga0059261_0536 0.53 +0.7 540,784 - Ga0059261_0536 0.53 +0.2 540,784 - Ga0059261_0536 0.53 +0.3 540,824 + Ga0059261_0536 0.60 +0.4 540,870 + Ga0059261_0536 0.68 +0.4 540,871 - Ga0059261_0536 0.68 +2.4 540,871 - Ga0059261_0536 0.68 +1.1 540,871 - Ga0059261_0536 0.68 -0.2 540,871 - Ga0059261_0536 0.68 -0.3 541,186 + -2.5 541,186 + +0.4 541,187 - -0.7 541,187 - +0.4 541,187 - -0.9 541,432 + Ga0059261_0537 0.27 +0.2 541,433 - Ga0059261_0537 0.27 -1.1 541,447 + Ga0059261_0537 0.28 -1.3 541,447 + Ga0059261_0537 0.28 +1.6 541,447 + Ga0059261_0537 0.28 -0.3 541,447 + Ga0059261_0537 0.28 +2.2 541,448 - Ga0059261_0537 0.28 -0.0 541,448 - Ga0059261_0537 0.28 -1.1 541,493 - Ga0059261_0537 0.32 +0.0 541,493 - Ga0059261_0537 0.32 -1.1 541,616 - Ga0059261_0537 0.42 -0.7 541,616 - Ga0059261_0537 0.42 +1.2 541,718 - Ga0059261_0537 0.51 -1.4 541,718 - Ga0059261_0537 0.51 -0.4 541,780 + Ga0059261_0537 0.56 -0.6 541,780 + Ga0059261_0537 0.56 -2.0 541,822 + Ga0059261_0537 0.60 +1.4 541,822 + Ga0059261_0537 0.60 +0.3 541,864 + Ga0059261_0537 0.63 +1.2 541,865 - Ga0059261_0537 0.64 -1.0 541,865 - Ga0059261_0537 0.64 -1.1 541,924 + Ga0059261_0537 0.69 +2.2 541,924 + Ga0059261_0537 0.69 -3.3 541,924 + Ga0059261_0537 0.69 +1.2 541,924 + Ga0059261_0537 0.69 +1.8 541,924 + Ga0059261_0537 0.69 +0.7 541,927 + Ga0059261_0537 0.69 -2.8 541,928 - Ga0059261_0537 0.69 +0.4 541,928 - Ga0059261_0537 0.69 +1.6 541,960 + Ga0059261_0537 0.72 -0.2 541,960 + Ga0059261_0537 0.72 +1.5 541,960 + Ga0059261_0537 0.72 -0.4 541,960 + Ga0059261_0537 0.72 -0.0 541,960 + Ga0059261_0537 0.72 -0.1 541,960 + Ga0059261_0537 0.72 +2.0 541,960 + Ga0059261_0537 0.72 -0.6 541,960 + Ga0059261_0537 0.72 -0.9 541,961 - Ga0059261_0537 0.72 +0.8 541,961 - Ga0059261_0537 0.72 -0.2 541,961 - Ga0059261_0537 0.72 -1.0 541,961 - Ga0059261_0537 0.72 -0.8 541,961 - Ga0059261_0537 0.72 -0.8 541,961 - Ga0059261_0537 0.72 -0.1 541,961 - Ga0059261_0537 0.72 +1.4 541,961 - Ga0059261_0537 0.72 +0.0 541,961 - Ga0059261_0537 0.72 +0.9
Or see this region's nucleotide sequence