Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0495 and Ga0059261_0496 are separated by 12 nucleotides Ga0059261_0496 and Ga0059261_0497 are separated by 38 nucleotides Ga0059261_0497 and Ga0059261_0498 are separated by 72 nucleotides Ga0059261_0498 and Ga0059261_0499 are separated by 250 nucleotides
Ga0059261_0495: Ga0059261_0495 - ABC-type transport system, involved in lipoprotein release, permease component, at 487,903 to 489,186
_0495
Ga0059261_0496: Ga0059261_0496 - Uncharacterized protein conserved in bacteria, at 489,199 to 489,690
_0496
Ga0059261_0497: Ga0059261_0497 - hypothetical protein, at 489,729 to 490,097
_0497
Ga0059261_0498: Ga0059261_0498 - Outer membrane receptor proteins, mostly Fe transport, at 490,170 to 492,320
_0498
Ga0059261_0499: Ga0059261_0499 - Beta-glucosidase-related glycosidases, at 492,571 to 494,439
_0499
Position (kb) 490
491
492
493 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 489.184 kb on + strand at 489.184 kb on + strand at 489.184 kb on + strand at 489.184 kb on + strand at 489.184 kb on + strand at 489.185 kb on - strand at 489.185 kb on - strand at 489.189 kb on + strand at 489.189 kb on + strand at 489.189 kb on + strand at 489.190 kb on - strand at 489.391 kb on + strand, within Ga0059261_0496 at 489.391 kb on + strand, within Ga0059261_0496 at 489.566 kb on + strand, within Ga0059261_0496 at 489.567 kb on - strand, within Ga0059261_0496 at 489.661 kb on + strand at 489.661 kb on + strand at 489.662 kb on - strand at 489.662 kb on - strand at 489.713 kb on - strand at 489.753 kb on + strand at 489.753 kb on + strand at 489.854 kb on - strand, within Ga0059261_0497 at 489.944 kb on + strand, within Ga0059261_0497 at 490.011 kb on + strand, within Ga0059261_0497 at 490.011 kb on + strand, within Ga0059261_0497 at 490.011 kb on + strand, within Ga0059261_0497 at 490.012 kb on - strand, within Ga0059261_0497 at 490.012 kb on - strand, within Ga0059261_0497 at 490.012 kb on - strand, within Ga0059261_0497 at 490.012 kb on - strand, within Ga0059261_0497 at 490.012 kb on - strand, within Ga0059261_0497 at 490.012 kb on - strand, within Ga0059261_0497 at 490.015 kb on + strand, within Ga0059261_0497 at 490.015 kb on + strand, within Ga0059261_0497 at 490.015 kb on + strand, within Ga0059261_0497 at 490.016 kb on - strand, within Ga0059261_0497 at 490.016 kb on - strand, within Ga0059261_0497 at 490.016 kb on - strand, within Ga0059261_0497 at 490.166 kb on + strand at 490.166 kb on + strand at 490.166 kb on + strand at 490.166 kb on + strand at 490.166 kb on + strand at 490.167 kb on - strand at 490.167 kb on - strand at 490.176 kb on + strand at 490.176 kb on + strand at 490.176 kb on + strand at 490.176 kb on + strand at 490.176 kb on + strand at 490.176 kb on + strand at 490.176 kb on + strand at 490.176 kb on + strand at 490.176 kb on + strand at 490.176 kb on + strand at 490.176 kb on + strand at 490.177 kb on - strand at 490.177 kb on - strand at 490.177 kb on - strand at 490.177 kb on - strand at 490.182 kb on + strand at 490.182 kb on + strand at 490.182 kb on + strand at 490.182 kb on + strand at 490.182 kb on + strand at 490.183 kb on - strand at 490.183 kb on - strand at 490.704 kb on + strand, within Ga0059261_0498 at 490.704 kb on + strand, within Ga0059261_0498 at 490.704 kb on + strand, within Ga0059261_0498 at 490.704 kb on + strand, within Ga0059261_0498 at 490.704 kb on + strand at 490.704 kb on + strand, within Ga0059261_0498 at 490.704 kb on + strand, within Ga0059261_0498 at 490.704 kb on + strand, within Ga0059261_0498 at 490.704 kb on + strand, within Ga0059261_0498 at 490.705 kb on - strand, within Ga0059261_0498 at 490.705 kb on - strand, within Ga0059261_0498 at 490.705 kb on - strand, within Ga0059261_0498 at 490.705 kb on - strand, within Ga0059261_0498 at 490.705 kb on - strand, within Ga0059261_0498 at 490.705 kb on - strand, within Ga0059261_0498 at 490.705 kb on - strand, within Ga0059261_0498 at 490.705 kb on - strand, within Ga0059261_0498 at 490.791 kb on + strand, within Ga0059261_0498 at 490.791 kb on + strand, within Ga0059261_0498 at 490.791 kb on + strand, within Ga0059261_0498 at 490.791 kb on + strand, within Ga0059261_0498 at 490.791 kb on + strand, within Ga0059261_0498 at 490.792 kb on - strand, within Ga0059261_0498 at 490.792 kb on - strand, within Ga0059261_0498 at 491.028 kb on + strand, within Ga0059261_0498 at 491.028 kb on + strand, within Ga0059261_0498 at 491.028 kb on + strand, within Ga0059261_0498 at 491.028 kb on + strand, within Ga0059261_0498 at 491.029 kb on - strand, within Ga0059261_0498 at 491.029 kb on - strand, within Ga0059261_0498 at 491.037 kb on + strand, within Ga0059261_0498 at 491.037 kb on + strand, within Ga0059261_0498 at 491.037 kb on + strand at 491.037 kb on + strand, within Ga0059261_0498 at 491.037 kb on + strand, within Ga0059261_0498 at 491.038 kb on - strand, within Ga0059261_0498 at 491.038 kb on - strand, within Ga0059261_0498 at 491.049 kb on + strand, within Ga0059261_0498 at 491.049 kb on + strand, within Ga0059261_0498 at 491.050 kb on - strand, within Ga0059261_0498 at 491.050 kb on - strand, within Ga0059261_0498 at 491.050 kb on - strand, within Ga0059261_0498 at 491.050 kb on - strand, within Ga0059261_0498 at 491.050 kb on - strand, within Ga0059261_0498 at 491.068 kb on - strand, within Ga0059261_0498 at 491.068 kb on - strand, within Ga0059261_0498 at 491.193 kb on + strand, within Ga0059261_0498 at 491.194 kb on - strand, within Ga0059261_0498 at 491.194 kb on - strand, within Ga0059261_0498 at 491.250 kb on + strand, within Ga0059261_0498 at 491.250 kb on + strand, within Ga0059261_0498 at 491.250 kb on + strand, within Ga0059261_0498 at 491.250 kb on + strand, within Ga0059261_0498 at 491.250 kb on + strand, within Ga0059261_0498 at 491.250 kb on + strand, within Ga0059261_0498 at 491.251 kb on - strand, within Ga0059261_0498 at 491.251 kb on - strand, within Ga0059261_0498 at 491.251 kb on - strand, within Ga0059261_0498 at 491.251 kb on - strand, within Ga0059261_0498 at 491.328 kb on + strand, within Ga0059261_0498 at 491.328 kb on + strand, within Ga0059261_0498 at 491.328 kb on + strand, within Ga0059261_0498 at 491.329 kb on - strand, within Ga0059261_0498 at 491.457 kb on + strand, within Ga0059261_0498 at 491.457 kb on + strand, within Ga0059261_0498 at 491.500 kb on + strand, within Ga0059261_0498 at 491.500 kb on + strand, within Ga0059261_0498 at 491.500 kb on + strand, within Ga0059261_0498 at 491.500 kb on + strand, within Ga0059261_0498 at 491.500 kb on + strand at 491.500 kb on + strand, within Ga0059261_0498 at 491.500 kb on + strand, within Ga0059261_0498 at 491.500 kb on + strand, within Ga0059261_0498 at 491.501 kb on - strand, within Ga0059261_0498 at 491.501 kb on - strand, within Ga0059261_0498 at 491.501 kb on - strand, within Ga0059261_0498 at 491.501 kb on - strand, within Ga0059261_0498 at 491.501 kb on - strand, within Ga0059261_0498 at 491.667 kb on + strand, within Ga0059261_0498 at 491.667 kb on + strand, within Ga0059261_0498 at 491.667 kb on + strand, within Ga0059261_0498 at 491.667 kb on + strand, within Ga0059261_0498 at 491.667 kb on + strand, within Ga0059261_0498 at 491.667 kb on + strand, within Ga0059261_0498 at 491.667 kb on + strand, within Ga0059261_0498 at 491.668 kb on - strand, within Ga0059261_0498 at 491.668 kb on - strand, within Ga0059261_0498 at 491.766 kb on + strand, within Ga0059261_0498 at 491.767 kb on - strand, within Ga0059261_0498 at 491.769 kb on + strand, within Ga0059261_0498 at 491.769 kb on + strand, within Ga0059261_0498 at 491.769 kb on + strand, within Ga0059261_0498 at 491.769 kb on + strand, within Ga0059261_0498 at 491.769 kb on + strand, within Ga0059261_0498 at 491.770 kb on - strand, within Ga0059261_0498 at 491.770 kb on - strand, within Ga0059261_0498 at 491.787 kb on + strand, within Ga0059261_0498 at 491.787 kb on + strand, within Ga0059261_0498 at 491.787 kb on + strand, within Ga0059261_0498 at 491.787 kb on + strand, within Ga0059261_0498 at 491.787 kb on + strand, within Ga0059261_0498 at 491.787 kb on + strand, within Ga0059261_0498 at 491.788 kb on - strand, within Ga0059261_0498 at 491.788 kb on - strand, within Ga0059261_0498 at 491.788 kb on - strand, within Ga0059261_0498 at 491.788 kb on - strand, within Ga0059261_0498 at 491.789 kb on + strand, within Ga0059261_0498 at 491.789 kb on + strand, within Ga0059261_0498 at 491.789 kb on + strand, within Ga0059261_0498 at 491.790 kb on - strand, within Ga0059261_0498 at 491.790 kb on - strand, within Ga0059261_0498 at 491.790 kb on - strand, within Ga0059261_0498 at 491.790 kb on - strand at 491.895 kb on + strand, within Ga0059261_0498 at 491.898 kb on + strand, within Ga0059261_0498 at 491.898 kb on + strand, within Ga0059261_0498 at 491.898 kb on + strand, within Ga0059261_0498 at 491.899 kb on - strand, within Ga0059261_0498 at 491.899 kb on - strand, within Ga0059261_0498 at 491.899 kb on - strand, within Ga0059261_0498 at 491.906 kb on - strand, within Ga0059261_0498 at 491.906 kb on - strand, within Ga0059261_0498 at 491.946 kb on + strand, within Ga0059261_0498 at 491.947 kb on - strand, within Ga0059261_0498 at 491.976 kb on + strand, within Ga0059261_0498 at 491.976 kb on + strand, within Ga0059261_0498 at 491.976 kb on + strand, within Ga0059261_0498 at 491.976 kb on + strand, within Ga0059261_0498 at 491.976 kb on + strand, within Ga0059261_0498 at 491.977 kb on - strand, within Ga0059261_0498 at 491.977 kb on - strand, within Ga0059261_0498 at 491.977 kb on - strand, within Ga0059261_0498 at 492.141 kb on + strand at 492.141 kb on + strand at 492.141 kb on + strand at 492.141 kb on + strand at 492.142 kb on - strand at 492.143 kb on + strand at 492.143 kb on + strand at 492.143 kb on + strand at 492.143 kb on + strand at 492.144 kb on - strand at 492.144 kb on - strand at 492.144 kb on - strand at 492.144 kb on - strand at 492.144 kb on - strand at 492.318 kb on + strand at 492.319 kb on - strand at 492.319 kb on - strand at 492.454 kb on + strand at 492.455 kb on - strand at 492.455 kb on - strand at 492.455 kb on - strand at 492.477 kb on + strand at 492.478 kb on - strand at 492.572 kb on + strand at 492.572 kb on + strand at 492.572 kb on + strand at 492.572 kb on + strand at 492.572 kb on + strand at 492.572 kb on + strand at 492.573 kb on - strand at 492.573 kb on - strand at 492.573 kb on - strand at 492.573 kb on - strand at 492.573 kb on - strand at 492.574 kb on + strand at 492.574 kb on + strand at 492.574 kb on + strand at 492.574 kb on + strand at 492.574 kb on + strand at 492.574 kb on + strand at 492.575 kb on - strand at 492.575 kb on - strand at 492.575 kb on - strand at 492.575 kb on - strand at 492.575 kb on - strand at 492.575 kb on - strand at 492.575 kb on - strand at 492.575 kb on - strand at 492.575 kb on - strand at 492.633 kb on + strand at 492.738 kb on + strand at 492.738 kb on + strand at 492.756 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 489,184 + -1.0 489,184 + -1.9 489,184 + +1.0 489,184 + -1.3 489,184 + -0.7 489,185 - -0.7 489,185 - -1.0 489,189 + -1.8 489,189 + -1.3 489,189 + -0.1 489,190 - +0.7 489,391 + Ga0059261_0496 0.39 -1.6 489,391 + Ga0059261_0496 0.39 -0.1 489,566 + Ga0059261_0496 0.75 +0.2 489,567 - Ga0059261_0496 0.75 +0.6 489,661 + +0.1 489,661 + +1.4 489,662 - -2.4 489,662 - -1.1 489,713 - -0.6 489,753 + -0.1 489,753 + -0.4 489,854 - Ga0059261_0497 0.34 -0.9 489,944 + Ga0059261_0497 0.58 -1.8 490,011 + Ga0059261_0497 0.76 -1.4 490,011 + Ga0059261_0497 0.76 +1.3 490,011 + Ga0059261_0497 0.76 -1.0 490,012 - Ga0059261_0497 0.77 -1.1 490,012 - Ga0059261_0497 0.77 +2.4 490,012 - Ga0059261_0497 0.77 -1.1 490,012 - Ga0059261_0497 0.77 +0.0 490,012 - Ga0059261_0497 0.77 +2.3 490,012 - Ga0059261_0497 0.77 +1.8 490,015 + Ga0059261_0497 0.78 +0.9 490,015 + Ga0059261_0497 0.78 +1.1 490,015 + Ga0059261_0497 0.78 +2.4 490,016 - Ga0059261_0497 0.78 -0.4 490,016 - Ga0059261_0497 0.78 +1.3 490,016 - Ga0059261_0497 0.78 +0.1 490,166 + -1.3 490,166 + -2.2 490,166 + -0.8 490,166 + -0.5 490,166 + -1.7 490,167 - -0.3 490,167 - -0.1 490,176 + -0.8 490,176 + +2.0 490,176 + -2.4 490,176 + -0.0 490,176 + +0.4 490,176 + -1.4 490,176 + +1.2 490,176 + -0.9 490,176 + +1.1 490,176 + -3.2 490,176 + +3.0 490,177 - -1.0 490,177 - +0.6 490,177 - +2.5 490,177 - +0.4 490,182 + -1.4 490,182 + +0.5 490,182 + -1.7 490,182 + +1.6 490,182 + +0.0 490,183 - +1.4 490,183 - +0.6 490,704 + Ga0059261_0498 0.25 +0.4 490,704 + Ga0059261_0498 0.25 -0.0 490,704 + Ga0059261_0498 0.25 -0.9 490,704 + Ga0059261_0498 0.25 +1.9 490,704 + +0.6 490,704 + Ga0059261_0498 0.25 -0.1 490,704 + Ga0059261_0498 0.25 -2.0 490,704 + Ga0059261_0498 0.25 -0.4 490,704 + Ga0059261_0498 0.25 -0.8 490,705 - Ga0059261_0498 0.25 +0.3 490,705 - Ga0059261_0498 0.25 -0.8 490,705 - Ga0059261_0498 0.25 -2.3 490,705 - Ga0059261_0498 0.25 +0.2 490,705 - Ga0059261_0498 0.25 -0.4 490,705 - Ga0059261_0498 0.25 +0.8 490,705 - Ga0059261_0498 0.25 -2.3 490,705 - Ga0059261_0498 0.25 -1.9 490,791 + Ga0059261_0498 0.29 -0.0 490,791 + Ga0059261_0498 0.29 -2.1 490,791 + Ga0059261_0498 0.29 -2.1 490,791 + Ga0059261_0498 0.29 -0.7 490,791 + Ga0059261_0498 0.29 -2.4 490,792 - Ga0059261_0498 0.29 +0.4 490,792 - Ga0059261_0498 0.29 +0.0 491,028 + Ga0059261_0498 0.40 +0.6 491,028 + Ga0059261_0498 0.40 +1.0 491,028 + Ga0059261_0498 0.40 +2.2 491,028 + Ga0059261_0498 0.40 +0.2 491,029 - Ga0059261_0498 0.40 -0.4 491,029 - Ga0059261_0498 0.40 +0.4 491,037 + Ga0059261_0498 0.40 -1.8 491,037 + Ga0059261_0498 0.40 +2.3 491,037 + +2.6 491,037 + Ga0059261_0498 0.40 -1.5 491,037 + Ga0059261_0498 0.40 -0.1 491,038 - Ga0059261_0498 0.40 -0.6 491,038 - Ga0059261_0498 0.40 -1.0 491,049 + Ga0059261_0498 0.41 -1.8 491,049 + Ga0059261_0498 0.41 -2.0 491,050 - Ga0059261_0498 0.41 +0.7 491,050 - Ga0059261_0498 0.41 +0.0 491,050 - Ga0059261_0498 0.41 +0.3 491,050 - Ga0059261_0498 0.41 -0.4 491,050 - Ga0059261_0498 0.41 +1.9 491,068 - Ga0059261_0498 0.42 -0.4 491,068 - Ga0059261_0498 0.42 -0.7 491,193 + Ga0059261_0498 0.48 +0.3 491,194 - Ga0059261_0498 0.48 +2.4 491,194 - Ga0059261_0498 0.48 +2.2 491,250 + Ga0059261_0498 0.50 +1.5 491,250 + Ga0059261_0498 0.50 +0.5 491,250 + Ga0059261_0498 0.50 +2.2 491,250 + Ga0059261_0498 0.50 -1.2 491,250 + Ga0059261_0498 0.50 +0.4 491,250 + Ga0059261_0498 0.50 +0.6 491,251 - Ga0059261_0498 0.50 +0.2 491,251 - Ga0059261_0498 0.50 -2.3 491,251 - Ga0059261_0498 0.50 -2.3 491,251 - Ga0059261_0498 0.50 -2.0 491,328 + Ga0059261_0498 0.54 +1.0 491,328 + Ga0059261_0498 0.54 -0.6 491,328 + Ga0059261_0498 0.54 -1.1 491,329 - Ga0059261_0498 0.54 -0.9 491,457 + Ga0059261_0498 0.60 +0.5 491,457 + Ga0059261_0498 0.60 +0.8 491,500 + Ga0059261_0498 0.62 -2.0 491,500 + Ga0059261_0498 0.62 -0.1 491,500 + Ga0059261_0498 0.62 +2.0 491,500 + Ga0059261_0498 0.62 -1.0 491,500 + +3.5 491,500 + Ga0059261_0498 0.62 -0.4 491,500 + Ga0059261_0498 0.62 -2.8 491,500 + Ga0059261_0498 0.62 +0.1 491,501 - Ga0059261_0498 0.62 -0.0 491,501 - Ga0059261_0498 0.62 +0.8 491,501 - Ga0059261_0498 0.62 +2.3 491,501 - Ga0059261_0498 0.62 -1.5 491,501 - Ga0059261_0498 0.62 +0.6 491,667 + Ga0059261_0498 0.70 -0.4 491,667 + Ga0059261_0498 0.70 -0.3 491,667 + Ga0059261_0498 0.70 +0.2 491,667 + Ga0059261_0498 0.70 -2.2 491,667 + Ga0059261_0498 0.70 -0.2 491,667 + Ga0059261_0498 0.70 -0.3 491,667 + Ga0059261_0498 0.70 +0.3 491,668 - Ga0059261_0498 0.70 -0.0 491,668 - Ga0059261_0498 0.70 -0.1 491,766 + Ga0059261_0498 0.74 -2.8 491,767 - Ga0059261_0498 0.74 +0.7 491,769 + Ga0059261_0498 0.74 -0.4 491,769 + Ga0059261_0498 0.74 -1.1 491,769 + Ga0059261_0498 0.74 +1.9 491,769 + Ga0059261_0498 0.74 -1.4 491,769 + Ga0059261_0498 0.74 +1.5 491,770 - Ga0059261_0498 0.74 -0.8 491,770 - Ga0059261_0498 0.74 -1.3 491,787 + Ga0059261_0498 0.75 -2.4 491,787 + Ga0059261_0498 0.75 -0.1 491,787 + Ga0059261_0498 0.75 -1.0 491,787 + Ga0059261_0498 0.75 +2.0 491,787 + Ga0059261_0498 0.75 -2.3 491,787 + Ga0059261_0498 0.75 -0.9 491,788 - Ga0059261_0498 0.75 -1.7 491,788 - Ga0059261_0498 0.75 -0.5 491,788 - Ga0059261_0498 0.75 +1.8 491,788 - Ga0059261_0498 0.75 +1.0 491,789 + Ga0059261_0498 0.75 +0.5 491,789 + Ga0059261_0498 0.75 -1.4 491,789 + Ga0059261_0498 0.75 -0.9 491,790 - Ga0059261_0498 0.75 -0.4 491,790 - Ga0059261_0498 0.75 -0.4 491,790 - Ga0059261_0498 0.75 -0.8 491,790 - +0.6 491,895 + Ga0059261_0498 0.80 +2.0 491,898 + Ga0059261_0498 0.80 -1.4 491,898 + Ga0059261_0498 0.80 +1.4 491,898 + Ga0059261_0498 0.80 -0.4 491,899 - Ga0059261_0498 0.80 -2.4 491,899 - Ga0059261_0498 0.80 +0.3 491,899 - Ga0059261_0498 0.80 -0.3 491,906 - Ga0059261_0498 0.81 -1.5 491,906 - Ga0059261_0498 0.81 +2.2 491,946 + Ga0059261_0498 0.83 -1.0 491,947 - Ga0059261_0498 0.83 -0.9 491,976 + Ga0059261_0498 0.84 +0.1 491,976 + Ga0059261_0498 0.84 -0.1 491,976 + Ga0059261_0498 0.84 +0.3 491,976 + Ga0059261_0498 0.84 -1.1 491,976 + Ga0059261_0498 0.84 +1.2 491,977 - Ga0059261_0498 0.84 +0.1 491,977 - Ga0059261_0498 0.84 -0.8 491,977 - Ga0059261_0498 0.84 -0.7 492,141 + -0.4 492,141 + -0.4 492,141 + -1.3 492,141 + +1.7 492,142 - -0.4 492,143 + -1.8 492,143 + -0.9 492,143 + +0.4 492,143 + -1.0 492,144 - -2.9 492,144 - +0.7 492,144 - -0.1 492,144 - +0.3 492,144 - -1.3 492,318 + -1.1 492,319 - -1.0 492,319 - -2.4 492,454 + -0.1 492,455 - +0.2 492,455 - +1.2 492,455 - +0.8 492,477 + +0.8 492,478 - +0.4 492,572 + -0.4 492,572 + +0.6 492,572 + +1.4 492,572 + +1.0 492,572 + +0.6 492,572 + +0.9 492,573 - -1.4 492,573 - +0.5 492,573 - +1.3 492,573 - -0.1 492,573 - +0.2 492,574 + -0.2 492,574 + -2.5 492,574 + +2.4 492,574 + +0.0 492,574 + -0.3 492,574 + -1.6 492,575 - +0.3 492,575 - -1.0 492,575 - +1.2 492,575 - -0.8 492,575 - +0.0 492,575 - +2.1 492,575 - +0.6 492,575 - +2.4 492,575 - +0.2 492,633 + -1.1 492,738 + +0.3 492,738 + +0.2 492,756 + -0.4
Or see this region's nucleotide sequence