Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0406 and Ga0059261_0407 are separated by 576 nucleotides Ga0059261_0407 and Ga0059261_0408 are separated by 531 nucleotides
Ga0059261_0406: Ga0059261_0406 - Predicted transcriptional regulators, at 388,927 to 389,274
_0406
Ga0059261_0407: Ga0059261_0407 - hypothetical protein, at 389,851 to 390,432
_0407
Ga0059261_0408: Ga0059261_0408 - Predicted transcriptional regulators, at 390,964 to 392,772
_0408
Position (kb) 389
390
391 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 389.016 kb on - strand, within Ga0059261_0406 at 389.016 kb on - strand, within Ga0059261_0406 at 389.127 kb on + strand, within Ga0059261_0406 at 389.127 kb on + strand, within Ga0059261_0406 at 389.127 kb on + strand, within Ga0059261_0406 at 389.127 kb on + strand, within Ga0059261_0406 at 389.127 kb on + strand, within Ga0059261_0406 at 389.127 kb on + strand, within Ga0059261_0406 at 389.127 kb on + strand, within Ga0059261_0406 at 389.127 kb on + strand, within Ga0059261_0406 at 389.127 kb on + strand, within Ga0059261_0406 at 389.128 kb on - strand, within Ga0059261_0406 at 389.128 kb on - strand, within Ga0059261_0406 at 389.128 kb on - strand, within Ga0059261_0406 at 389.128 kb on - strand, within Ga0059261_0406 at 389.128 kb on - strand, within Ga0059261_0406 at 389.128 kb on - strand, within Ga0059261_0406 at 389.128 kb on - strand at 389.128 kb on - strand, within Ga0059261_0406 at 389.128 kb on - strand, within Ga0059261_0406 at 389.128 kb on - strand, within Ga0059261_0406 at 389.179 kb on + strand, within Ga0059261_0406 at 389.179 kb on + strand, within Ga0059261_0406 at 389.180 kb on - strand, within Ga0059261_0406 at 389.214 kb on + strand, within Ga0059261_0406 at 389.324 kb on + strand at 389.378 kb on - strand at 389.426 kb on + strand at 389.426 kb on + strand at 389.449 kb on - strand at 389.450 kb on + strand at 389.524 kb on + strand at 389.524 kb on + strand at 389.524 kb on + strand at 389.524 kb on + strand at 389.524 kb on + strand at 389.524 kb on + strand at 389.524 kb on + strand at 389.525 kb on - strand at 389.525 kb on - strand at 389.525 kb on - strand at 389.525 kb on - strand at 389.525 kb on - strand at 389.579 kb on - strand at 389.579 kb on - strand at 389.718 kb on - strand at 389.718 kb on - strand at 389.718 kb on - strand at 389.718 kb on - strand at 389.731 kb on - strand at 389.777 kb on + strand at 389.777 kb on + strand at 389.778 kb on - strand at 389.828 kb on + strand at 389.828 kb on + strand at 389.829 kb on - strand at 389.840 kb on + strand at 389.840 kb on + strand at 389.841 kb on - strand at 389.920 kb on + strand, within Ga0059261_0407 at 389.920 kb on + strand, within Ga0059261_0407 at 389.920 kb on + strand, within Ga0059261_0407 at 389.921 kb on - strand, within Ga0059261_0407 at 390.017 kb on - strand, within Ga0059261_0407 at 390.017 kb on - strand, within Ga0059261_0407 at 390.045 kb on + strand, within Ga0059261_0407 at 390.045 kb on + strand, within Ga0059261_0407 at 390.045 kb on + strand, within Ga0059261_0407 at 390.046 kb on - strand, within Ga0059261_0407 at 390.046 kb on - strand, within Ga0059261_0407 at 390.046 kb on - strand, within Ga0059261_0407 at 390.046 kb on - strand, within Ga0059261_0407 at 390.046 kb on - strand, within Ga0059261_0407 at 390.086 kb on - strand, within Ga0059261_0407 at 390.170 kb on + strand, within Ga0059261_0407 at 390.171 kb on - strand, within Ga0059261_0407 at 390.171 kb on - strand, within Ga0059261_0407 at 390.171 kb on - strand, within Ga0059261_0407 at 390.178 kb on + strand, within Ga0059261_0407 at 390.205 kb on + strand at 390.206 kb on - strand, within Ga0059261_0407 at 390.211 kb on + strand, within Ga0059261_0407 at 390.211 kb on + strand, within Ga0059261_0407 at 390.211 kb on + strand, within Ga0059261_0407 at 390.211 kb on + strand, within Ga0059261_0407 at 390.211 kb on + strand, within Ga0059261_0407 at 390.212 kb on - strand, within Ga0059261_0407 at 390.212 kb on - strand, within Ga0059261_0407 at 390.212 kb on - strand, within Ga0059261_0407 at 390.212 kb on - strand, within Ga0059261_0407 at 390.212 kb on - strand, within Ga0059261_0407 at 390.212 kb on - strand, within Ga0059261_0407 at 390.344 kb on + strand, within Ga0059261_0407 at 390.345 kb on - strand, within Ga0059261_0407 at 390.417 kb on + strand at 390.471 kb on + strand at 390.481 kb on + strand at 390.481 kb on + strand at 390.482 kb on - strand at 390.541 kb on + strand at 390.541 kb on + strand at 390.541 kb on + strand at 390.541 kb on + strand at 390.541 kb on + strand at 390.541 kb on + strand at 390.542 kb on - strand at 390.542 kb on - strand at 390.542 kb on - strand at 390.542 kb on - strand at 390.542 kb on - strand at 390.613 kb on + strand at 390.613 kb on + strand at 390.626 kb on + strand at 390.626 kb on + strand at 390.626 kb on + strand at 390.626 kb on + strand at 390.627 kb on - strand at 390.627 kb on - strand at 390.627 kb on - strand at 390.627 kb on - strand at 390.627 kb on - strand at 390.627 kb on - strand at 390.658 kb on + strand at 390.658 kb on + strand at 390.658 kb on + strand at 390.658 kb on + strand at 390.658 kb on + strand at 390.658 kb on + strand at 390.659 kb on - strand at 390.659 kb on - strand at 390.659 kb on - strand at 390.659 kb on - strand at 390.659 kb on - strand at 390.659 kb on - strand at 390.659 kb on - strand at 390.659 kb on - strand at 391.024 kb on - strand at 391.024 kb on - strand at 391.092 kb on + strand at 391.092 kb on + strand at 391.093 kb on - strand at 391.094 kb on + strand at 391.094 kb on + strand at 391.094 kb on + strand at 391.094 kb on + strand at 391.095 kb on - strand at 391.095 kb on - strand at 391.095 kb on - strand at 391.095 kb on - strand at 391.095 kb on - strand at 391.095 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 389,016 - Ga0059261_0406 0.26 -0.7 389,016 - Ga0059261_0406 0.26 +0.8 389,127 + Ga0059261_0406 0.57 +1.2 389,127 + Ga0059261_0406 0.57 +0.7 389,127 + Ga0059261_0406 0.57 -2.5 389,127 + Ga0059261_0406 0.57 -0.9 389,127 + Ga0059261_0406 0.57 -1.4 389,127 + Ga0059261_0406 0.57 +0.6 389,127 + Ga0059261_0406 0.57 -0.3 389,127 + Ga0059261_0406 0.57 +1.0 389,127 + Ga0059261_0406 0.57 -1.1 389,128 - Ga0059261_0406 0.58 -0.1 389,128 - Ga0059261_0406 0.58 -0.2 389,128 - Ga0059261_0406 0.58 -0.2 389,128 - Ga0059261_0406 0.58 -2.4 389,128 - Ga0059261_0406 0.58 -0.9 389,128 - Ga0059261_0406 0.58 -1.6 389,128 - +2.2 389,128 - Ga0059261_0406 0.58 +0.4 389,128 - Ga0059261_0406 0.58 +2.8 389,128 - Ga0059261_0406 0.58 +0.2 389,179 + Ga0059261_0406 0.72 +0.8 389,179 + Ga0059261_0406 0.72 +1.2 389,180 - Ga0059261_0406 0.73 -0.1 389,214 + Ga0059261_0406 0.82 +0.8 389,324 + -2.0 389,378 - -2.4 389,426 + +1.2 389,426 + -1.1 389,449 - +0.1 389,450 + -0.9 389,524 + -1.9 389,524 + -0.8 389,524 + +0.7 389,524 + -1.7 389,524 + +0.9 389,524 + +0.4 389,524 + -0.4 389,525 - +2.3 389,525 - +2.2 389,525 - -1.9 389,525 - +0.7 389,525 - -1.6 389,579 - -0.1 389,579 - -1.6 389,718 - -0.5 389,718 - +0.8 389,718 - -1.9 389,718 - -2.2 389,731 - -2.7 389,777 + +2.1 389,777 + -2.1 389,778 - +0.3 389,828 + -0.5 389,828 + -1.4 389,829 - -0.8 389,840 + -0.4 389,840 + -1.4 389,841 - -1.7 389,920 + Ga0059261_0407 0.12 -0.4 389,920 + Ga0059261_0407 0.12 +0.1 389,920 + Ga0059261_0407 0.12 +1.2 389,921 - Ga0059261_0407 0.12 -1.0 390,017 - Ga0059261_0407 0.29 +0.4 390,017 - Ga0059261_0407 0.29 +0.9 390,045 + Ga0059261_0407 0.33 -0.8 390,045 + Ga0059261_0407 0.33 -1.9 390,045 + Ga0059261_0407 0.33 -0.7 390,046 - Ga0059261_0407 0.34 -0.1 390,046 - Ga0059261_0407 0.34 +1.8 390,046 - Ga0059261_0407 0.34 +2.0 390,046 - Ga0059261_0407 0.34 -2.2 390,046 - Ga0059261_0407 0.34 +0.4 390,086 - Ga0059261_0407 0.40 -1.5 390,170 + Ga0059261_0407 0.55 +2.6 390,171 - Ga0059261_0407 0.55 +1.1 390,171 - Ga0059261_0407 0.55 -0.9 390,171 - Ga0059261_0407 0.55 +1.3 390,178 + Ga0059261_0407 0.56 -0.5 390,205 + +0.6 390,206 - Ga0059261_0407 0.61 +0.5 390,211 + Ga0059261_0407 0.62 -2.3 390,211 + Ga0059261_0407 0.62 -2.0 390,211 + Ga0059261_0407 0.62 +1.8 390,211 + Ga0059261_0407 0.62 -0.8 390,211 + Ga0059261_0407 0.62 +0.6 390,212 - Ga0059261_0407 0.62 +1.2 390,212 - Ga0059261_0407 0.62 +0.1 390,212 - Ga0059261_0407 0.62 +0.8 390,212 - Ga0059261_0407 0.62 -1.5 390,212 - Ga0059261_0407 0.62 +0.0 390,212 - Ga0059261_0407 0.62 +2.0 390,344 + Ga0059261_0407 0.85 +0.2 390,345 - Ga0059261_0407 0.85 -1.9 390,417 + -0.2 390,471 + +0.4 390,481 + -1.4 390,481 + -0.4 390,482 - -0.3 390,541 + +1.3 390,541 + -0.7 390,541 + -2.2 390,541 + +0.5 390,541 + +1.1 390,541 + -0.4 390,542 - -0.7 390,542 - -0.1 390,542 - +0.9 390,542 - -2.1 390,542 - +2.2 390,613 + -0.9 390,613 + -0.9 390,626 + +0.8 390,626 + +0.2 390,626 + -1.6 390,626 + +0.5 390,627 - -0.8 390,627 - +1.4 390,627 - +0.2 390,627 - -0.1 390,627 - +0.1 390,627 - -1.7 390,658 + -0.1 390,658 + -1.4 390,658 + +0.4 390,658 + -0.8 390,658 + -0.9 390,658 + -1.5 390,659 - -0.4 390,659 - +3.0 390,659 - +1.8 390,659 - -0.1 390,659 - -1.0 390,659 - +0.2 390,659 - -0.1 390,659 - -2.2 391,024 - +0.3 391,024 - +1.0 391,092 + +1.3 391,092 + -2.2 391,093 - -2.1 391,094 + -0.4 391,094 + +2.2 391,094 + +0.3 391,094 + -0.7 391,095 - -2.3 391,095 - -1.7 391,095 - +2.0 391,095 - -0.6 391,095 - -0.6 391,095 - -0.3
Or see this region's nucleotide sequence