Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19340

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19335 and CSW01_19340 are separated by 133 nucleotidesCSW01_19340 and CSW01_19345 overlap by 4 nucleotidesCSW01_19345 and CSW01_19350 are separated by 75 nucleotides CSW01_19335: CSW01_19335 - MBL fold metallo-hydrolase, at 998,047 to 998,925 _19335 CSW01_19340: CSW01_19340 - glycerol kinase, at 999,059 to 999,982 _19340 CSW01_19345: CSW01_19345 - YccF domain-containing protein, at 999,979 to 1,000,410 _19345 CSW01_19350: CSW01_19350 - sulfite exporter TauE/SafE family protein, at 1,000,486 to 1,001,208 _19350 Position (kb) 999 1000Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 998.076 kb on - strandat 998.081 kb on - strandat 998.093 kb on - strandat 998.093 kb on - strandat 998.111 kb on + strandat 998.142 kb on + strand, within CSW01_19335at 998.159 kb on + strand, within CSW01_19335at 998.164 kb on + strand, within CSW01_19335at 998.164 kb on + strand, within CSW01_19335at 998.172 kb on - strand, within CSW01_19335at 998.212 kb on + strand, within CSW01_19335at 998.247 kb on + strand, within CSW01_19335at 998.247 kb on + strand, within CSW01_19335at 998.287 kb on + strand, within CSW01_19335at 998.301 kb on - strand, within CSW01_19335at 998.339 kb on + strand, within CSW01_19335at 998.347 kb on - strand, within CSW01_19335at 998.374 kb on + strand, within CSW01_19335at 998.421 kb on + strand, within CSW01_19335at 998.421 kb on + strand, within CSW01_19335at 998.528 kb on - strand, within CSW01_19335at 998.540 kb on + strand, within CSW01_19335at 998.566 kb on + strand, within CSW01_19335at 998.566 kb on - strand, within CSW01_19335at 998.587 kb on + strand, within CSW01_19335at 998.595 kb on - strand, within CSW01_19335at 998.617 kb on + strand, within CSW01_19335at 998.662 kb on + strand, within CSW01_19335at 998.667 kb on + strand, within CSW01_19335at 998.670 kb on - strand, within CSW01_19335at 998.670 kb on - strand, within CSW01_19335at 998.712 kb on + strand, within CSW01_19335at 998.712 kb on + strand, within CSW01_19335at 998.720 kb on - strand, within CSW01_19335at 998.720 kb on - strand, within CSW01_19335at 998.728 kb on - strand, within CSW01_19335at 998.778 kb on + strand, within CSW01_19335at 998.778 kb on + strand, within CSW01_19335at 998.786 kb on - strand, within CSW01_19335at 998.786 kb on - strand, within CSW01_19335at 998.813 kb on + strand, within CSW01_19335at 998.814 kb on + strand, within CSW01_19335at 998.822 kb on - strand, within CSW01_19335at 998.866 kb on - strandat 998.876 kb on - strandat 998.945 kb on + strandat 998.945 kb on + strandat 998.953 kb on - strandat 999.012 kb on + strandat 999.012 kb on + strandat 999.020 kb on - strandat 999.034 kb on + strandat 999.040 kb on - strandat 999.045 kb on + strandat 999.136 kb on - strandat 999.173 kb on - strand, within CSW01_19340at 999.213 kb on + strand, within CSW01_19340at 999.349 kb on + strand, within CSW01_19340at 999.434 kb on - strand, within CSW01_19340at 999.434 kb on - strand, within CSW01_19340at 999.436 kb on + strand, within CSW01_19340at 999.442 kb on + strand, within CSW01_19340at 999.446 kb on + strand, within CSW01_19340at 999.488 kb on - strand, within CSW01_19340at 999.488 kb on - strand, within CSW01_19340at 999.517 kb on - strand, within CSW01_19340at 999.703 kb on - strand, within CSW01_19340at 999.738 kb on - strand, within CSW01_19340at 999.743 kb on - strand, within CSW01_19340at 999.775 kb on - strand, within CSW01_19340at 999.837 kb on + strand, within CSW01_19340at 999.888 kb on + strand, within CSW01_19340at 999.888 kb on + strand, within CSW01_19340at 999.888 kb on + strand, within CSW01_19340at 999.888 kb on + strand, within CSW01_19340at 999.896 kb on - strandat 999.896 kb on - strandat 999.939 kb on - strandat 999.984 kb on - strandat 999.984 kb on - strandat 999.984 kb on - strandat 1000.054 kb on - strand, within CSW01_19345at 1000.070 kb on - strand, within CSW01_19345at 1000.114 kb on - strand, within CSW01_19345at 1000.332 kb on - strand, within CSW01_19345at 1000.354 kb on + strand, within CSW01_19345at 1000.416 kb on - strandat 1000.588 kb on + strand, within CSW01_19350at 1000.588 kb on + strand, within CSW01_19350at 1000.596 kb on - strand, within CSW01_19350at 1000.596 kb on - strand, within CSW01_19350at 1000.596 kb on - strand, within CSW01_19350at 1000.601 kb on - strand, within CSW01_19350at 1000.611 kb on + strand, within CSW01_19350at 1000.639 kb on - strand, within CSW01_19350at 1000.896 kb on + strand, within CSW01_19350at 1000.911 kb on - strand, within CSW01_19350at 1000.936 kb on - strand, within CSW01_19350at 1000.947 kb on - strand, within CSW01_19350

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15B
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998,076 - -0.2
998,081 - -0.7
998,093 - -0.2
998,093 - +0.3
998,111 + +0.3
998,142 + CSW01_19335 0.11 -0.8
998,159 + CSW01_19335 0.13 -0.2
998,164 + CSW01_19335 0.13 +0.2
998,164 + CSW01_19335 0.13 -1.0
998,172 - CSW01_19335 0.14 +0.3
998,212 + CSW01_19335 0.19 -0.3
998,247 + CSW01_19335 0.23 -2.4
998,247 + CSW01_19335 0.23 -1.7
998,287 + CSW01_19335 0.27 +0.1
998,301 - CSW01_19335 0.29 -0.3
998,339 + CSW01_19335 0.33 +0.7
998,347 - CSW01_19335 0.34 +1.6
998,374 + CSW01_19335 0.37 -0.5
998,421 + CSW01_19335 0.43 +0.7
998,421 + CSW01_19335 0.43 +0.2
998,528 - CSW01_19335 0.55 +0.1
998,540 + CSW01_19335 0.56 +0.3
998,566 + CSW01_19335 0.59 -1.0
998,566 - CSW01_19335 0.59 -0.0
998,587 + CSW01_19335 0.61 -0.8
998,595 - CSW01_19335 0.62 -0.1
998,617 + CSW01_19335 0.65 -0.7
998,662 + CSW01_19335 0.70 -0.3
998,667 + CSW01_19335 0.71 -1.7
998,670 - CSW01_19335 0.71 +0.4
998,670 - CSW01_19335 0.71 -1.2
998,712 + CSW01_19335 0.76 -1.1
998,712 + CSW01_19335 0.76 +0.1
998,720 - CSW01_19335 0.77 -1.9
998,720 - CSW01_19335 0.77 -1.2
998,728 - CSW01_19335 0.77 +0.3
998,778 + CSW01_19335 0.83 +0.2
998,778 + CSW01_19335 0.83 +1.0
998,786 - CSW01_19335 0.84 -1.1
998,786 - CSW01_19335 0.84 -0.6
998,813 + CSW01_19335 0.87 +0.0
998,814 + CSW01_19335 0.87 +0.4
998,822 - CSW01_19335 0.88 -0.7
998,866 - -0.7
998,876 - -0.7
998,945 + +0.3
998,945 + -2.1
998,953 - -0.7
999,012 + -0.1
999,012 + +1.1
999,020 - +0.3
999,034 + -0.4
999,040 - -0.5
999,045 + +0.0
999,136 - -0.1
999,173 - CSW01_19340 0.12 -0.6
999,213 + CSW01_19340 0.17 -0.3
999,349 + CSW01_19340 0.31 +0.5
999,434 - CSW01_19340 0.41 -0.4
999,434 - CSW01_19340 0.41 +0.3
999,436 + CSW01_19340 0.41 -0.1
999,442 + CSW01_19340 0.41 +0.0
999,446 + CSW01_19340 0.42 +1.5
999,488 - CSW01_19340 0.46 -1.2
999,488 - CSW01_19340 0.46 +0.6
999,517 - CSW01_19340 0.50 +0.6
999,703 - CSW01_19340 0.70 +0.1
999,738 - CSW01_19340 0.73 -0.2
999,743 - CSW01_19340 0.74 +0.0
999,775 - CSW01_19340 0.77 +2.2
999,837 + CSW01_19340 0.84 +0.5
999,888 + CSW01_19340 0.90 +2.0
999,888 + CSW01_19340 0.90 +0.8
999,888 + CSW01_19340 0.90 +0.8
999,888 + CSW01_19340 0.90 -3.0
999,896 - -0.3
999,896 - +0.1
999,939 - +0.8
999,984 - +0.5
999,984 - -0.1
999,984 - -1.1
1,000,054 - CSW01_19345 0.17 +0.3
1,000,070 - CSW01_19345 0.21 +0.3
1,000,114 - CSW01_19345 0.31 -0.0
1,000,332 - CSW01_19345 0.82 -0.1
1,000,354 + CSW01_19345 0.87 -0.1
1,000,416 - -0.1
1,000,588 + CSW01_19350 0.14 -0.2
1,000,588 + CSW01_19350 0.14 +0.5
1,000,596 - CSW01_19350 0.15 +1.0
1,000,596 - CSW01_19350 0.15 +0.3
1,000,596 - CSW01_19350 0.15 -0.2
1,000,601 - CSW01_19350 0.16 -0.4
1,000,611 + CSW01_19350 0.17 -0.7
1,000,639 - CSW01_19350 0.21 +0.5
1,000,896 + CSW01_19350 0.57 -0.4
1,000,911 - CSW01_19350 0.59 -0.1
1,000,936 - CSW01_19350 0.62 +0.4
1,000,947 - CSW01_19350 0.64 +0.3

Or see this region's nucleotide sequence