Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18320

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18310 and CSW01_18315 are separated by 62 nucleotidesCSW01_18315 and CSW01_18320 are separated by 141 nucleotidesCSW01_18320 and CSW01_18325 are separated by 136 nucleotides CSW01_18310: CSW01_18310 - hypothetical protein, at 775,246 to 775,431 _18310 CSW01_18315: CSW01_18315 - methyltransferase, at 775,494 to 776,126 _18315 CSW01_18320: CSW01_18320 - LysR family transcriptional regulator, at 776,268 to 777,146 _18320 CSW01_18325: CSW01_18325 - cation transporter, at 777,283 to 778,236 _18325 Position (kb) 776 777 778Strain fitness (log2 ratio) -2 -1 0 1 2at 775.393 kb on - strand, within CSW01_18310at 775.406 kb on + strand, within CSW01_18310at 775.547 kb on + strandat 775.581 kb on - strand, within CSW01_18315at 775.581 kb on - strand, within CSW01_18315at 775.585 kb on + strand, within CSW01_18315at 775.598 kb on - strand, within CSW01_18315at 775.600 kb on + strand, within CSW01_18315at 775.876 kb on - strand, within CSW01_18315at 775.886 kb on - strand, within CSW01_18315at 775.937 kb on - strand, within CSW01_18315at 776.153 kb on - strandat 776.246 kb on + strandat 776.265 kb on + strandat 776.265 kb on + strandat 776.273 kb on - strandat 776.273 kb on - strandat 776.273 kb on - strandat 776.313 kb on + strandat 776.329 kb on - strandat 776.408 kb on + strand, within CSW01_18320at 776.408 kb on + strand, within CSW01_18320at 776.408 kb on + strand, within CSW01_18320at 776.428 kb on + strand, within CSW01_18320at 776.436 kb on - strand, within CSW01_18320at 776.436 kb on - strand, within CSW01_18320at 776.551 kb on - strand, within CSW01_18320at 776.648 kb on - strand, within CSW01_18320at 776.779 kb on + strand, within CSW01_18320at 776.779 kb on + strand, within CSW01_18320at 776.779 kb on + strand, within CSW01_18320at 776.891 kb on + strand, within CSW01_18320at 776.891 kb on + strand, within CSW01_18320at 776.941 kb on + strand, within CSW01_18320at 777.065 kb on + strandat 777.112 kb on + strandat 777.112 kb on + strandat 777.112 kb on + strandat 777.112 kb on + strandat 777.112 kb on + strandat 777.112 kb on + strandat 777.120 kb on - strandat 777.120 kb on - strandat 777.120 kb on - strandat 777.120 kb on - strandat 777.120 kb on - strandat 777.120 kb on - strandat 777.120 kb on - strandat 777.120 kb on - strandat 777.120 kb on - strandat 777.127 kb on - strandat 777.553 kb on + strand, within CSW01_18325at 777.576 kb on - strand, within CSW01_18325at 777.577 kb on + strand, within CSW01_18325at 777.577 kb on + strand, within CSW01_18325at 777.606 kb on - strand, within CSW01_18325at 777.635 kb on + strand, within CSW01_18325at 777.652 kb on + strand, within CSW01_18325at 777.654 kb on + strand, within CSW01_18325at 777.655 kb on - strand, within CSW01_18325at 777.662 kb on - strand, within CSW01_18325at 777.662 kb on - strand, within CSW01_18325at 777.813 kb on - strand, within CSW01_18325at 777.863 kb on + strand, within CSW01_18325at 777.863 kb on + strand, within CSW01_18325at 777.863 kb on + strand, within CSW01_18325at 777.863 kb on + strand, within CSW01_18325at 777.871 kb on - strand, within CSW01_18325at 777.871 kb on - strand, within CSW01_18325at 777.871 kb on - strand, within CSW01_18325at 777.871 kb on - strand, within CSW01_18325at 777.889 kb on + strand, within CSW01_18325at 777.967 kb on - strand, within CSW01_18325at 777.988 kb on + strand, within CSW01_18325at 778.015 kb on + strand, within CSW01_18325at 778.033 kb on - strand, within CSW01_18325at 778.033 kb on - strand, within CSW01_18325at 778.033 kb on - strand, within CSW01_18325at 778.088 kb on + strand, within CSW01_18325

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15B
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775,393 - CSW01_18310 0.79 +0.6
775,406 + CSW01_18310 0.86 -0.1
775,547 + +0.1
775,581 - CSW01_18315 0.14 -1.6
775,581 - CSW01_18315 0.14 +0.3
775,585 + CSW01_18315 0.14 -0.2
775,598 - CSW01_18315 0.16 -0.9
775,600 + CSW01_18315 0.17 +0.6
775,876 - CSW01_18315 0.60 +0.3
775,886 - CSW01_18315 0.62 -0.5
775,937 - CSW01_18315 0.70 -2.3
776,153 - +0.7
776,246 + +0.3
776,265 + +0.6
776,265 + +0.4
776,273 - +0.3
776,273 - +0.3
776,273 - -0.4
776,313 + +0.6
776,329 - +0.4
776,408 + CSW01_18320 0.16 +0.5
776,408 + CSW01_18320 0.16 +0.3
776,408 + CSW01_18320 0.16 +0.5
776,428 + CSW01_18320 0.18 -0.3
776,436 - CSW01_18320 0.19 -1.2
776,436 - CSW01_18320 0.19 +0.1
776,551 - CSW01_18320 0.32 +0.2
776,648 - CSW01_18320 0.43 +0.3
776,779 + CSW01_18320 0.58 +0.3
776,779 + CSW01_18320 0.58 -0.9
776,779 + CSW01_18320 0.58 +0.9
776,891 + CSW01_18320 0.71 +0.1
776,891 + CSW01_18320 0.71 -0.1
776,941 + CSW01_18320 0.77 -1.9
777,065 + -0.1
777,112 + -0.7
777,112 + -0.5
777,112 + -0.1
777,112 + +0.4
777,112 + +0.5
777,112 + +0.2
777,120 - -0.3
777,120 - -0.4
777,120 - +0.2
777,120 - +1.1
777,120 - +0.3
777,120 - +0.8
777,120 - +1.0
777,120 - -0.4
777,120 - -0.0
777,127 - +0.3
777,553 + CSW01_18325 0.28 -0.1
777,576 - CSW01_18325 0.31 +0.2
777,577 + CSW01_18325 0.31 -0.3
777,577 + CSW01_18325 0.31 -0.3
777,606 - CSW01_18325 0.34 -0.8
777,635 + CSW01_18325 0.37 +0.8
777,652 + CSW01_18325 0.39 -0.3
777,654 + CSW01_18325 0.39 +0.1
777,655 - CSW01_18325 0.39 +0.1
777,662 - CSW01_18325 0.40 +0.3
777,662 - CSW01_18325 0.40 -1.2
777,813 - CSW01_18325 0.56 +1.5
777,863 + CSW01_18325 0.61 +1.8
777,863 + CSW01_18325 0.61 -0.6
777,863 + CSW01_18325 0.61 +0.3
777,863 + CSW01_18325 0.61 +0.0
777,871 - CSW01_18325 0.62 -0.1
777,871 - CSW01_18325 0.62 +1.8
777,871 - CSW01_18325 0.62 -0.1
777,871 - CSW01_18325 0.62 +0.1
777,889 + CSW01_18325 0.64 -0.6
777,967 - CSW01_18325 0.72 -0.5
777,988 + CSW01_18325 0.74 -0.4
778,015 + CSW01_18325 0.77 -0.2
778,033 - CSW01_18325 0.79 +0.0
778,033 - CSW01_18325 0.79 -0.5
778,033 - CSW01_18325 0.79 +1.0
778,088 + CSW01_18325 0.84 -0.1

Or see this region's nucleotide sequence