Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18045

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18040 and CSW01_18045 are separated by 85 nucleotidesCSW01_18045 and CSW01_18050 are separated by 12 nucleotidesCSW01_18050 and CSW01_18055 are separated by 121 nucleotides CSW01_18040: CSW01_18040 - methyl-accepting chemotaxis protein, at 713,469 to 714,890 _18040 CSW01_18045: CSW01_18045 - UDP-glucose 4-epimerase GalE, at 714,976 to 715,992 _18045 CSW01_18050: CSW01_18050 - hypothetical protein, at 716,005 to 716,190 _18050 CSW01_18055: CSW01_18055 - hypothetical protein, at 716,312 to 717,052 _18055 Position (kb) 714 715 716Strain fitness (log2 ratio) -2 -1 0 1 2at 714.020 kb on + strand, within CSW01_18040at 714.063 kb on + strand, within CSW01_18040at 714.071 kb on - strand, within CSW01_18040at 714.073 kb on + strand, within CSW01_18040at 714.073 kb on + strand, within CSW01_18040at 714.079 kb on + strand, within CSW01_18040at 714.251 kb on - strand, within CSW01_18040at 714.301 kb on + strand, within CSW01_18040at 714.374 kb on + strand, within CSW01_18040at 714.382 kb on - strand, within CSW01_18040at 714.479 kb on - strand, within CSW01_18040at 714.618 kb on + strand, within CSW01_18040at 714.621 kb on - strand, within CSW01_18040at 714.621 kb on - strand, within CSW01_18040at 714.650 kb on + strand, within CSW01_18040at 714.650 kb on + strand, within CSW01_18040at 714.658 kb on - strand, within CSW01_18040at 714.660 kb on + strand, within CSW01_18040at 714.660 kb on + strand, within CSW01_18040at 714.660 kb on + strand, within CSW01_18040at 714.668 kb on - strand, within CSW01_18040at 714.668 kb on - strand, within CSW01_18040at 714.668 kb on - strand, within CSW01_18040at 714.668 kb on - strand, within CSW01_18040at 714.668 kb on - strand, within CSW01_18040at 714.785 kb on + strandat 714.785 kb on + strandat 714.793 kb on - strandat 714.793 kb on - strandat 714.826 kb on + strandat 715.039 kb on + strandat 715.191 kb on - strand, within CSW01_18045at 715.201 kb on - strand, within CSW01_18045at 715.308 kb on + strand, within CSW01_18045at 715.308 kb on + strand, within CSW01_18045at 715.316 kb on - strand, within CSW01_18045at 715.316 kb on - strand, within CSW01_18045at 715.458 kb on + strand, within CSW01_18045at 715.466 kb on - strand, within CSW01_18045at 715.484 kb on - strand, within CSW01_18045at 715.522 kb on - strand, within CSW01_18045at 715.739 kb on + strand, within CSW01_18045at 715.739 kb on + strand, within CSW01_18045at 715.747 kb on - strand, within CSW01_18045at 715.772 kb on + strand, within CSW01_18045at 715.780 kb on - strand, within CSW01_18045at 715.830 kb on - strand, within CSW01_18045at 715.840 kb on - strand, within CSW01_18045at 715.915 kb on + strandat 715.915 kb on + strandat 715.923 kb on - strandat 715.946 kb on - strandat 715.958 kb on + strandat 716.002 kb on + strandat 716.199 kb on + strandat 716.239 kb on + strandat 716.297 kb on + strandat 716.335 kb on - strandat 716.450 kb on + strand, within CSW01_18055at 716.499 kb on - strand, within CSW01_18055at 716.529 kb on + strand, within CSW01_18055at 716.537 kb on - strand, within CSW01_18055at 716.670 kb on - strand, within CSW01_18055at 716.704 kb on + strand, within CSW01_18055at 716.721 kb on + strand, within CSW01_18055at 716.729 kb on - strand, within CSW01_18055at 716.767 kb on - strand, within CSW01_18055at 716.767 kb on - strand, within CSW01_18055at 716.876 kb on + strand, within CSW01_18055at 716.951 kb on - strand, within CSW01_18055at 716.987 kb on - strandat 716.987 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15B
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714,020 + CSW01_18040 0.39 -0.6
714,063 + CSW01_18040 0.42 +0.4
714,071 - CSW01_18040 0.42 -0.6
714,073 + CSW01_18040 0.42 -0.1
714,073 + CSW01_18040 0.42 +1.0
714,079 + CSW01_18040 0.43 -0.2
714,251 - CSW01_18040 0.55 -0.2
714,301 + CSW01_18040 0.59 +0.0
714,374 + CSW01_18040 0.64 -0.8
714,382 - CSW01_18040 0.64 -1.9
714,479 - CSW01_18040 0.71 +0.0
714,618 + CSW01_18040 0.81 +0.0
714,621 - CSW01_18040 0.81 +0.4
714,621 - CSW01_18040 0.81 -0.4
714,650 + CSW01_18040 0.83 -1.3
714,650 + CSW01_18040 0.83 +1.4
714,658 - CSW01_18040 0.84 -0.1
714,660 + CSW01_18040 0.84 -0.0
714,660 + CSW01_18040 0.84 -0.3
714,660 + CSW01_18040 0.84 +0.2
714,668 - CSW01_18040 0.84 -1.0
714,668 - CSW01_18040 0.84 -0.5
714,668 - CSW01_18040 0.84 +1.2
714,668 - CSW01_18040 0.84 -0.0
714,668 - CSW01_18040 0.84 -1.1
714,785 + +0.2
714,785 + -1.0
714,793 - +0.5
714,793 - -0.1
714,826 + -0.3
715,039 + -1.8
715,191 - CSW01_18045 0.21 -0.4
715,201 - CSW01_18045 0.22 -1.2
715,308 + CSW01_18045 0.33 -0.2
715,308 + CSW01_18045 0.33 -0.6
715,316 - CSW01_18045 0.33 -0.1
715,316 - CSW01_18045 0.33 -1.3
715,458 + CSW01_18045 0.47 -0.6
715,466 - CSW01_18045 0.48 +1.4
715,484 - CSW01_18045 0.50 -0.2
715,522 - CSW01_18045 0.54 +0.9
715,739 + CSW01_18045 0.75 -0.3
715,739 + CSW01_18045 0.75 -0.3
715,747 - CSW01_18045 0.76 -0.8
715,772 + CSW01_18045 0.78 -1.3
715,780 - CSW01_18045 0.79 -0.8
715,830 - CSW01_18045 0.84 -1.0
715,840 - CSW01_18045 0.85 -0.2
715,915 + -0.3
715,915 + -0.8
715,923 - +2.6
715,946 - -0.3
715,958 + +1.2
716,002 + -0.2
716,199 + +2.6
716,239 + +0.6
716,297 + +0.8
716,335 - -0.2
716,450 + CSW01_18055 0.19 +0.6
716,499 - CSW01_18055 0.25 +1.8
716,529 + CSW01_18055 0.29 +1.0
716,537 - CSW01_18055 0.30 +0.5
716,670 - CSW01_18055 0.48 +0.1
716,704 + CSW01_18055 0.53 -0.2
716,721 + CSW01_18055 0.55 -1.1
716,729 - CSW01_18055 0.56 +0.0
716,767 - CSW01_18055 0.61 +0.5
716,767 - CSW01_18055 0.61 +0.4
716,876 + CSW01_18055 0.76 +0.2
716,951 - CSW01_18055 0.86 +0.2
716,987 - -1.0
716,987 - -0.1

Or see this region's nucleotide sequence