Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17855

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17845 and CSW01_17850 are separated by 198 nucleotidesCSW01_17850 and CSW01_17855 overlap by 9 nucleotidesCSW01_17855 and CSW01_17860 are separated by 17 nucleotides CSW01_17845: CSW01_17845 - hypothetical protein, at 677,215 to 677,754 _17845 CSW01_17850: CSW01_17850 - flagellar brake protein, at 677,953 to 678,663 _17850 CSW01_17855: CSW01_17855 - autoinducer 2 sensor kinase/phosphatase LuxQ, at 678,655 to 681,228 _17855 CSW01_17860: CSW01_17860 - autoinducer 2-binding periplasmic protein LuxP, at 681,246 to 682,340 _17860 Position (kb) 678 679 680 681 682Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 677.677 kb on - strand, within CSW01_17845at 677.687 kb on + strand, within CSW01_17845at 677.687 kb on + strand, within CSW01_17845at 677.695 kb on - strand, within CSW01_17845at 677.748 kb on + strandat 677.748 kb on + strandat 677.805 kb on - strandat 677.810 kb on - strandat 677.832 kb on + strandat 677.840 kb on - strandat 677.941 kb on - strandat 677.953 kb on + strandat 677.953 kb on - strandat 677.961 kb on - strandat 678.080 kb on + strand, within CSW01_17850at 678.088 kb on - strand, within CSW01_17850at 678.166 kb on + strand, within CSW01_17850at 678.218 kb on + strand, within CSW01_17850at 678.273 kb on + strand, within CSW01_17850at 678.278 kb on + strand, within CSW01_17850at 678.286 kb on - strand, within CSW01_17850at 678.286 kb on - strand, within CSW01_17850at 678.286 kb on - strand, within CSW01_17850at 678.286 kb on - strand, within CSW01_17850at 678.287 kb on - strand, within CSW01_17850at 678.468 kb on + strand, within CSW01_17850at 678.476 kb on + strand, within CSW01_17850at 678.786 kb on + strandat 678.793 kb on + strandat 678.794 kb on - strandat 678.816 kb on - strandat 678.935 kb on - strand, within CSW01_17855at 678.936 kb on + strand, within CSW01_17855at 678.944 kb on - strand, within CSW01_17855at 678.948 kb on + strand, within CSW01_17855at 678.958 kb on + strand, within CSW01_17855at 678.966 kb on - strand, within CSW01_17855at 679.094 kb on - strand, within CSW01_17855at 679.160 kb on + strand, within CSW01_17855at 679.168 kb on - strand, within CSW01_17855at 679.168 kb on - strand, within CSW01_17855at 679.186 kb on - strand, within CSW01_17855at 679.229 kb on + strand, within CSW01_17855at 679.239 kb on + strand, within CSW01_17855at 679.239 kb on + strand, within CSW01_17855at 679.247 kb on - strand, within CSW01_17855at 679.381 kb on + strand, within CSW01_17855at 679.467 kb on - strand, within CSW01_17855at 679.560 kb on - strand, within CSW01_17855at 679.597 kb on + strand, within CSW01_17855at 679.602 kb on + strand, within CSW01_17855at 679.602 kb on + strand, within CSW01_17855at 679.663 kb on + strand, within CSW01_17855at 679.671 kb on - strand, within CSW01_17855at 679.697 kb on - strand, within CSW01_17855at 679.697 kb on - strand, within CSW01_17855at 679.739 kb on + strand, within CSW01_17855at 679.739 kb on + strand, within CSW01_17855at 679.739 kb on + strand, within CSW01_17855at 679.741 kb on + strand, within CSW01_17855at 679.787 kb on + strand, within CSW01_17855at 679.787 kb on + strand, within CSW01_17855at 679.787 kb on + strand, within CSW01_17855at 679.795 kb on - strand, within CSW01_17855at 679.814 kb on - strand, within CSW01_17855at 679.858 kb on + strand, within CSW01_17855at 679.899 kb on - strand, within CSW01_17855at 679.939 kb on + strand, within CSW01_17855at 679.960 kb on - strand, within CSW01_17855at 680.409 kb on + strand, within CSW01_17855at 680.419 kb on + strand, within CSW01_17855at 680.446 kb on + strand, within CSW01_17855at 680.492 kb on - strand, within CSW01_17855at 680.516 kb on - strand, within CSW01_17855at 680.523 kb on + strand, within CSW01_17855at 680.525 kb on + strand, within CSW01_17855at 680.528 kb on - strand, within CSW01_17855at 680.560 kb on - strand, within CSW01_17855at 680.569 kb on - strand, within CSW01_17855at 680.569 kb on - strand, within CSW01_17855at 680.592 kb on + strand, within CSW01_17855at 680.600 kb on - strand, within CSW01_17855at 680.608 kb on + strand, within CSW01_17855at 680.792 kb on - strand, within CSW01_17855at 680.996 kb on + strandat 681.074 kb on - strandat 681.076 kb on + strandat 681.086 kb on + strandat 681.157 kb on - strandat 681.195 kb on + strandat 681.203 kb on - strandat 681.239 kb on - strandat 681.339 kb on + strandat 681.483 kb on - strand, within CSW01_17860at 681.532 kb on + strand, within CSW01_17860at 681.563 kb on - strand, within CSW01_17860at 681.563 kb on - strand, within CSW01_17860at 681.594 kb on + strand, within CSW01_17860at 681.691 kb on - strand, within CSW01_17860at 681.719 kb on - strand, within CSW01_17860at 681.884 kb on + strand, within CSW01_17860at 681.894 kb on + strand, within CSW01_17860at 681.902 kb on - strand, within CSW01_17860at 681.902 kb on - strand, within CSW01_17860at 682.028 kb on - strand, within CSW01_17860at 682.060 kb on + strand, within CSW01_17860at 682.202 kb on + strand, within CSW01_17860

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15B
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677,677 - CSW01_17845 0.86 -1.0
677,687 + CSW01_17845 0.87 +0.7
677,687 + CSW01_17845 0.87 -0.0
677,695 - CSW01_17845 0.89 +0.7
677,748 + +0.9
677,748 + -0.1
677,805 - +3.4
677,810 - +1.1
677,832 + +0.2
677,840 - -0.6
677,941 - -0.4
677,953 + -0.3
677,953 - -0.9
677,961 - +0.2
678,080 + CSW01_17850 0.18 +0.2
678,088 - CSW01_17850 0.19 -0.2
678,166 + CSW01_17850 0.30 -1.8
678,218 + CSW01_17850 0.37 +1.2
678,273 + CSW01_17850 0.45 +0.9
678,278 + CSW01_17850 0.46 -0.0
678,286 - CSW01_17850 0.47 +0.0
678,286 - CSW01_17850 0.47 -0.1
678,286 - CSW01_17850 0.47 +0.2
678,286 - CSW01_17850 0.47 +0.3
678,287 - CSW01_17850 0.47 -0.6
678,468 + CSW01_17850 0.72 -0.8
678,476 + CSW01_17850 0.74 -0.4
678,786 + -0.1
678,793 + +0.5
678,794 - -0.1
678,816 - +0.3
678,935 - CSW01_17855 0.11 -0.4
678,936 + CSW01_17855 0.11 +0.6
678,944 - CSW01_17855 0.11 +0.7
678,948 + CSW01_17855 0.11 +1.0
678,958 + CSW01_17855 0.12 -0.3
678,966 - CSW01_17855 0.12 +0.6
679,094 - CSW01_17855 0.17 -0.5
679,160 + CSW01_17855 0.20 -0.9
679,168 - CSW01_17855 0.20 +0.5
679,168 - CSW01_17855 0.20 -0.5
679,186 - CSW01_17855 0.21 -0.6
679,229 + CSW01_17855 0.22 +0.2
679,239 + CSW01_17855 0.23 -0.0
679,239 + CSW01_17855 0.23 -0.6
679,247 - CSW01_17855 0.23 -1.3
679,381 + CSW01_17855 0.28 -0.8
679,467 - CSW01_17855 0.32 -3.7
679,560 - CSW01_17855 0.35 -0.4
679,597 + CSW01_17855 0.37 -0.8
679,602 + CSW01_17855 0.37 -0.7
679,602 + CSW01_17855 0.37 +1.0
679,663 + CSW01_17855 0.39 -1.2
679,671 - CSW01_17855 0.39 -1.2
679,697 - CSW01_17855 0.40 -0.4
679,697 - CSW01_17855 0.40 -2.4
679,739 + CSW01_17855 0.42 -2.1
679,739 + CSW01_17855 0.42 -0.9
679,739 + CSW01_17855 0.42 +0.2
679,741 + CSW01_17855 0.42 -1.0
679,787 + CSW01_17855 0.44 -1.4
679,787 + CSW01_17855 0.44 +0.2
679,787 + CSW01_17855 0.44 +0.1
679,795 - CSW01_17855 0.44 +0.8
679,814 - CSW01_17855 0.45 -1.9
679,858 + CSW01_17855 0.47 +0.7
679,899 - CSW01_17855 0.48 -1.0
679,939 + CSW01_17855 0.50 -1.6
679,960 - CSW01_17855 0.51 -0.6
680,409 + CSW01_17855 0.68 -1.4
680,419 + CSW01_17855 0.69 -0.9
680,446 + CSW01_17855 0.70 -0.8
680,492 - CSW01_17855 0.71 +1.0
680,516 - CSW01_17855 0.72 +0.2
680,523 + CSW01_17855 0.73 -1.5
680,525 + CSW01_17855 0.73 -0.3
680,528 - CSW01_17855 0.73 -0.4
680,560 - CSW01_17855 0.74 -0.7
680,569 - CSW01_17855 0.74 +0.1
680,569 - CSW01_17855 0.74 -1.1
680,592 + CSW01_17855 0.75 +0.2
680,600 - CSW01_17855 0.76 -1.5
680,608 + CSW01_17855 0.76 -0.8
680,792 - CSW01_17855 0.83 -0.5
680,996 + -0.1
681,074 - +2.0
681,076 + -1.6
681,086 + -0.5
681,157 - -0.7
681,195 + -1.3
681,203 - +0.4
681,239 - -0.5
681,339 + -0.2
681,483 - CSW01_17860 0.22 +0.3
681,532 + CSW01_17860 0.26 +1.1
681,563 - CSW01_17860 0.29 +0.9
681,563 - CSW01_17860 0.29 +0.5
681,594 + CSW01_17860 0.32 -2.1
681,691 - CSW01_17860 0.41 -0.4
681,719 - CSW01_17860 0.43 +0.1
681,884 + CSW01_17860 0.58 +3.0
681,894 + CSW01_17860 0.59 -0.5
681,902 - CSW01_17860 0.60 +0.5
681,902 - CSW01_17860 0.60 -0.2
682,028 - CSW01_17860 0.71 -0.4
682,060 + CSW01_17860 0.74 -0.2
682,202 + CSW01_17860 0.87 +0.6

Or see this region's nucleotide sequence