Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17680

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17675 and CSW01_17680 are separated by 302 nucleotidesCSW01_17680 and CSW01_17685 are separated by 265 nucleotides CSW01_17675: CSW01_17675 - GGDEF domain-containing protein, at 633,291 to 635,219 _17675 CSW01_17680: CSW01_17680 - glucose-1-phosphate adenylyltransferase, at 635,522 to 636,745 _17680 CSW01_17685: CSW01_17685 - chitinase, at 637,011 to 640,166 _17685 Position (kb) 635 636 637Strain fitness (log2 ratio) -2 -1 0 1 2at 634.535 kb on + strand, within CSW01_17675at 634.545 kb on + strand, within CSW01_17675at 634.553 kb on - strand, within CSW01_17675at 634.839 kb on + strand, within CSW01_17675at 634.894 kb on - strand, within CSW01_17675at 635.025 kb on + strand, within CSW01_17675at 635.136 kb on + strandat 635.267 kb on - strandat 635.287 kb on + strandat 635.287 kb on + strandat 635.295 kb on - strandat 635.311 kb on - strandat 635.312 kb on - strandat 635.328 kb on + strandat 635.336 kb on - strandat 635.341 kb on - strandat 635.341 kb on - strandat 635.498 kb on - strandat 635.517 kb on + strandat 635.525 kb on - strandat 635.756 kb on - strand, within CSW01_17680at 635.849 kb on - strand, within CSW01_17680at 635.961 kb on + strand, within CSW01_17680at 636.055 kb on - strand, within CSW01_17680at 636.254 kb on + strand, within CSW01_17680at 636.254 kb on + strand, within CSW01_17680at 636.254 kb on + strand, within CSW01_17680at 636.254 kb on + strand, within CSW01_17680at 636.262 kb on - strand, within CSW01_17680at 636.262 kb on - strand, within CSW01_17680at 636.262 kb on - strand, within CSW01_17680at 636.262 kb on - strand, within CSW01_17680at 636.262 kb on - strand, within CSW01_17680at 636.262 kb on - strand, within CSW01_17680at 636.282 kb on - strand, within CSW01_17680at 636.387 kb on + strand, within CSW01_17680at 636.387 kb on + strand, within CSW01_17680at 636.387 kb on + strand, within CSW01_17680at 636.408 kb on - strand, within CSW01_17680at 636.492 kb on + strand, within CSW01_17680at 636.537 kb on + strand, within CSW01_17680at 636.555 kb on - strand, within CSW01_17680at 636.566 kb on - strand, within CSW01_17680at 636.581 kb on - strand, within CSW01_17680at 636.592 kb on + strand, within CSW01_17680at 636.592 kb on + strand, within CSW01_17680at 636.592 kb on - strand, within CSW01_17680at 636.592 kb on - strand, within CSW01_17680at 636.597 kb on + strand, within CSW01_17680at 636.598 kb on - strand, within CSW01_17680at 636.599 kb on - strand, within CSW01_17680at 636.710 kb on - strandat 636.730 kb on + strandat 636.730 kb on + strandat 636.888 kb on + strandat 636.888 kb on + strandat 636.913 kb on - strandat 636.945 kb on - strandat 637.008 kb on - strandat 637.014 kb on + strandat 637.053 kb on - strandat 637.186 kb on + strandat 637.195 kb on + strandat 637.257 kb on - strandat 637.262 kb on - strandat 637.268 kb on + strandat 637.317 kb on - strandat 637.317 kb on - strandat 637.338 kb on + strand, within CSW01_17685at 637.423 kb on - strand, within CSW01_17685at 637.452 kb on + strand, within CSW01_17685at 637.452 kb on + strand, within CSW01_17685at 637.452 kb on + strand, within CSW01_17685at 637.460 kb on - strand, within CSW01_17685at 637.460 kb on - strand, within CSW01_17685at 637.460 kb on - strand, within CSW01_17685at 637.480 kb on - strand, within CSW01_17685at 637.506 kb on + strand, within CSW01_17685at 637.628 kb on + strand, within CSW01_17685at 637.726 kb on + strand, within CSW01_17685at 637.738 kb on + strand, within CSW01_17685

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15B
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634,535 + CSW01_17675 0.64 +0.0
634,545 + CSW01_17675 0.65 +1.1
634,553 - CSW01_17675 0.65 -0.2
634,839 + CSW01_17675 0.80 +0.5
634,894 - CSW01_17675 0.83 +1.8
635,025 + CSW01_17675 0.90 +1.1
635,136 + +0.2
635,267 - +0.3
635,287 + +0.8
635,287 + -0.8
635,295 - -1.4
635,311 - -0.8
635,312 - -0.8
635,328 + +1.0
635,336 - +0.3
635,341 - +2.2
635,341 - +2.2
635,498 - +0.4
635,517 + -0.1
635,525 - -0.3
635,756 - CSW01_17680 0.19 -0.5
635,849 - CSW01_17680 0.27 -0.2
635,961 + CSW01_17680 0.36 -0.6
636,055 - CSW01_17680 0.44 -0.4
636,254 + CSW01_17680 0.60 +0.2
636,254 + CSW01_17680 0.60 +0.3
636,254 + CSW01_17680 0.60 +0.7
636,254 + CSW01_17680 0.60 -0.8
636,262 - CSW01_17680 0.60 -0.0
636,262 - CSW01_17680 0.60 +0.8
636,262 - CSW01_17680 0.60 -0.2
636,262 - CSW01_17680 0.60 +0.4
636,262 - CSW01_17680 0.60 -0.7
636,262 - CSW01_17680 0.60 +0.3
636,282 - CSW01_17680 0.62 -0.6
636,387 + CSW01_17680 0.71 +2.5
636,387 + CSW01_17680 0.71 -0.5
636,387 + CSW01_17680 0.71 -0.3
636,408 - CSW01_17680 0.72 -0.5
636,492 + CSW01_17680 0.79 -2.1
636,537 + CSW01_17680 0.83 +0.2
636,555 - CSW01_17680 0.84 -0.0
636,566 - CSW01_17680 0.85 -1.3
636,581 - CSW01_17680 0.87 -0.4
636,592 + CSW01_17680 0.87 +0.0
636,592 + CSW01_17680 0.87 +0.1
636,592 - CSW01_17680 0.87 -1.2
636,592 - CSW01_17680 0.87 +0.7
636,597 + CSW01_17680 0.88 +0.3
636,598 - CSW01_17680 0.88 +0.2
636,599 - CSW01_17680 0.88 -0.9
636,710 - -0.9
636,730 + +0.9
636,730 + +0.2
636,888 + +0.3
636,888 + -0.6
636,913 - -0.3
636,945 - -0.3
637,008 - +0.3
637,014 + +0.4
637,053 - +0.0
637,186 + -1.8
637,195 + +0.2
637,257 - -0.1
637,262 - +0.1
637,268 + -0.3
637,317 - -0.5
637,317 - +0.1
637,338 + CSW01_17685 0.10 +0.2
637,423 - CSW01_17685 0.13 -0.4
637,452 + CSW01_17685 0.14 +0.5
637,452 + CSW01_17685 0.14 +0.3
637,452 + CSW01_17685 0.14 +0.4
637,460 - CSW01_17685 0.14 +0.0
637,460 - CSW01_17685 0.14 +0.9
637,460 - CSW01_17685 0.14 -1.1
637,480 - CSW01_17685 0.15 -0.2
637,506 + CSW01_17685 0.16 -0.1
637,628 + CSW01_17685 0.20 +0.0
637,726 + CSW01_17685 0.23 +0.9
637,738 + CSW01_17685 0.23 +0.2

Or see this region's nucleotide sequence