Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15855 and CSW01_15860 are separated by 27 nucleotides CSW01_15860 and CSW01_15865 are separated by 183 nucleotides CSW01_15865 and CSW01_15870 are separated by 127 nucleotides CSW01_15870 and CSW01_15875 overlap by 4 nucleotides CSW01_15875 and CSW01_15880 are separated by 228 nucleotides
CSW01_15855: CSW01_15855 - acetyltransferase, at 346,686 to 346,865
_15855
CSW01_15860: CSW01_15860 - DUF645 domain-containing protein, at 346,893 to 347,072
_15860
CSW01_15865: CSW01_15865 - DUF3465 domain-containing protein, at 347,256 to 347,681
_15865
CSW01_15870: CSW01_15870 - type II toxin-antitoxin system RelE/ParE family toxin, at 347,809 to 348,108
_15870
CSW01_15875: CSW01_15875 - type II toxin-antitoxin system ParD family antitoxin, at 348,105 to 348,347
_15875
CSW01_15880: CSW01_15880 - hypothetical protein, at 348,576 to 349,154
_15880
Position (kb) 347
348
349 Strain fitness (log2 ratio) -1
0
1 at 346.936 kb on + strand, within CSW01_15860 at 346.949 kb on + strand, within CSW01_15860 at 346.993 kb on + strand, within CSW01_15860 at 347.030 kb on + strand, within CSW01_15860 at 347.389 kb on + strand, within CSW01_15865 at 347.547 kb on - strand, within CSW01_15865 at 347.750 kb on + strand at 347.750 kb on + strand at 347.750 kb on + strand at 347.750 kb on + strand at 347.779 kb on - strand at 347.779 kb on - strand at 347.842 kb on + strand, within CSW01_15870 at 348.479 kb on + strand at 348.587 kb on + strand at 348.666 kb on - strand, within CSW01_15880 at 348.673 kb on + strand, within CSW01_15880 at 348.676 kb on - strand, within CSW01_15880 at 348.738 kb on + strand, within CSW01_15880 at 348.738 kb on + strand, within CSW01_15880 at 348.738 kb on + strand, within CSW01_15880 at 348.738 kb on + strand, within CSW01_15880 at 348.738 kb on + strand, within CSW01_15880 at 348.738 kb on + strand, within CSW01_15880 at 348.746 kb on - strand, within CSW01_15880 at 348.746 kb on - strand, within CSW01_15880 at 348.746 kb on - strand, within CSW01_15880 at 348.746 kb on - strand, within CSW01_15880 at 348.746 kb on - strand, within CSW01_15880 at 348.746 kb on - strand, within CSW01_15880 at 348.746 kb on - strand, within CSW01_15880 at 348.746 kb on - strand, within CSW01_15880 at 348.771 kb on + strand, within CSW01_15880 at 348.816 kb on - strand, within CSW01_15880 at 348.835 kb on - strand, within CSW01_15880 at 348.835 kb on - strand, within CSW01_15880 at 348.898 kb on + strand, within CSW01_15880 at 348.915 kb on + strand, within CSW01_15880 at 348.921 kb on - strand, within CSW01_15880 at 348.942 kb on + strand, within CSW01_15880 at 348.947 kb on + strand, within CSW01_15880 at 349.020 kb on + strand, within CSW01_15880 at 349.040 kb on - strand, within CSW01_15880 at 349.054 kb on - strand, within CSW01_15880 at 349.099 kb on + strand at 349.099 kb on + strand at 349.099 kb on + strand at 349.107 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15B remove 346,936 + CSW01_15860 0.24 +0.3 346,949 + CSW01_15860 0.31 -0.8 346,993 + CSW01_15860 0.56 -0.8 347,030 + CSW01_15860 0.76 -0.3 347,389 + CSW01_15865 0.31 -0.7 347,547 - CSW01_15865 0.68 +0.2 347,750 + -0.1 347,750 + -0.2 347,750 + -0.4 347,750 + +0.4 347,779 - -0.7 347,779 - -0.7 347,842 + CSW01_15870 0.11 -0.5 348,479 + +0.0 348,587 + +0.1 348,666 - CSW01_15880 0.16 +0.4 348,673 + CSW01_15880 0.17 +0.8 348,676 - CSW01_15880 0.17 +0.9 348,738 + CSW01_15880 0.28 +0.2 348,738 + CSW01_15880 0.28 -0.7 348,738 + CSW01_15880 0.28 -0.8 348,738 + CSW01_15880 0.28 -0.1 348,738 + CSW01_15880 0.28 -1.0 348,738 + CSW01_15880 0.28 +0.1 348,746 - CSW01_15880 0.29 -0.6 348,746 - CSW01_15880 0.29 -0.2 348,746 - CSW01_15880 0.29 -0.1 348,746 - CSW01_15880 0.29 +0.2 348,746 - CSW01_15880 0.29 -0.4 348,746 - CSW01_15880 0.29 -0.6 348,746 - CSW01_15880 0.29 +0.1 348,746 - CSW01_15880 0.29 +0.4 348,771 + CSW01_15880 0.34 -1.0 348,816 - CSW01_15880 0.41 -0.7 348,835 - CSW01_15880 0.45 -0.5 348,835 - CSW01_15880 0.45 -0.1 348,898 + CSW01_15880 0.56 -0.5 348,915 + CSW01_15880 0.59 -0.1 348,921 - CSW01_15880 0.60 -0.5 348,942 + CSW01_15880 0.63 +0.2 348,947 + CSW01_15880 0.64 -0.3 349,020 + CSW01_15880 0.77 -0.2 349,040 - CSW01_15880 0.80 -0.5 349,054 - CSW01_15880 0.83 +0.5 349,099 + -0.1 349,099 + -0.1 349,099 + +0.9 349,107 - +0.2
Or see this region's nucleotide sequence