Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14910 and CSW01_14915 are separated by 358 nucleotides CSW01_14915 and CSW01_14920 are separated by 387 nucleotides CSW01_14920 and CSW01_14925 are separated by 234 nucleotides CSW01_14925 and CSW01_14930 are separated by 86 nucleotides
CSW01_14910: CSW01_14910 - cold-shock protein, at 203,444 to 203,653
_14910
CSW01_14915: CSW01_14915 - ribosome alternative rescue factor ArfA, at 204,012 to 204,239
_14915
CSW01_14920: CSW01_14920 - NADH:ubiquinone oxidoreductase, at 204,627 to 205,004
_14920
CSW01_14925: CSW01_14925 - hypothetical protein, at 205,239 to 205,517
_14925
CSW01_14930: CSW01_14930 - response regulator, at 205,604 to 206,608
_14930
Position (kb) 204
205
206 Strain fitness (log2 ratio) -2
-1
0
1
2 at 203.728 kb on + strand at 203.802 kb on + strand at 203.802 kb on + strand at 203.802 kb on + strand at 203.823 kb on - strand at 203.996 kb on + strand at 203.999 kb on - strand at 204.047 kb on - strand, within CSW01_14915 at 204.108 kb on + strand, within CSW01_14915 at 204.205 kb on + strand, within CSW01_14915 at 204.255 kb on + strand at 204.263 kb on - strand at 204.265 kb on + strand at 204.360 kb on - strand at 204.689 kb on - strand, within CSW01_14920 at 204.794 kb on + strand, within CSW01_14920 at 204.827 kb on - strand, within CSW01_14920 at 205.038 kb on + strand at 205.038 kb on + strand at 205.038 kb on + strand at 205.038 kb on + strand at 205.046 kb on - strand at 205.048 kb on + strand at 205.116 kb on + strand at 205.186 kb on + strand at 205.194 kb on - strand at 205.194 kb on - strand at 205.194 kb on - strand at 205.194 kb on - strand at 205.194 kb on - strand at 205.202 kb on + strand at 205.202 kb on + strand at 205.203 kb on + strand at 205.234 kb on + strand at 205.300 kb on - strand, within CSW01_14925 at 205.352 kb on - strand, within CSW01_14925 at 205.383 kb on + strand, within CSW01_14925 at 205.430 kb on + strand, within CSW01_14925 at 205.436 kb on - strand, within CSW01_14925 at 205.438 kb on - strand, within CSW01_14925 at 205.438 kb on - strand, within CSW01_14925 at 205.464 kb on - strand, within CSW01_14925 at 205.491 kb on - strand at 205.544 kb on + strand at 205.606 kb on + strand at 205.606 kb on + strand at 205.616 kb on + strand at 205.624 kb on - strand at 205.683 kb on + strand at 205.686 kb on - strand at 205.688 kb on + strand at 205.736 kb on - strand, within CSW01_14930 at 205.743 kb on + strand, within CSW01_14930 at 205.751 kb on - strand, within CSW01_14930 at 205.969 kb on - strand, within CSW01_14930
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15B remove 203,728 + -0.8 203,802 + -0.3 203,802 + +1.0 203,802 + +0.7 203,823 - +0.6 203,996 + -2.0 203,999 - +0.1 204,047 - CSW01_14915 0.15 +0.6 204,108 + CSW01_14915 0.42 -1.2 204,205 + CSW01_14915 0.85 -0.5 204,255 + +0.2 204,263 - -0.8 204,265 + -0.4 204,360 - -0.1 204,689 - CSW01_14920 0.16 -0.7 204,794 + CSW01_14920 0.44 -0.5 204,827 - CSW01_14920 0.53 +1.2 205,038 + -0.3 205,038 + -0.4 205,038 + -1.0 205,038 + +0.5 205,046 - +0.2 205,048 + +0.4 205,116 + +0.6 205,186 + -0.1 205,194 - +0.6 205,194 - +0.4 205,194 - -0.1 205,194 - +0.3 205,194 - +1.4 205,202 + -0.0 205,202 + +0.3 205,203 + -0.9 205,234 + -0.6 205,300 - CSW01_14925 0.22 +0.3 205,352 - CSW01_14925 0.41 +0.4 205,383 + CSW01_14925 0.52 -0.6 205,430 + CSW01_14925 0.68 +0.0 205,436 - CSW01_14925 0.71 -0.9 205,438 - CSW01_14925 0.71 +0.3 205,438 - CSW01_14925 0.71 +0.2 205,464 - CSW01_14925 0.81 +1.5 205,491 - +0.3 205,544 + +0.0 205,606 + -0.6 205,606 + +0.8 205,616 + -1.8 205,624 - -0.1 205,683 + +1.9 205,686 - -0.0 205,688 + -0.4 205,736 - CSW01_14930 0.13 +0.2 205,743 + CSW01_14930 0.14 +1.5 205,751 - CSW01_14930 0.15 +0.5 205,969 - CSW01_14930 0.36 +0.3
Or see this region's nucleotide sequence