Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14780

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14775 and CSW01_14780 overlap by 4 nucleotidesCSW01_14780 and CSW01_14785 overlap by 1 nucleotides CSW01_14775: CSW01_14775 - Na+/H+ antiporter subunit D, at 171,113 to 172,609 _14775 CSW01_14780: CSW01_14780 - cation:proton antiporter, at 172,606 to 172,959 _14780 CSW01_14785: CSW01_14785 - proton-conducting membrane transporter, at 172,959 to 175,634 _14785 Position (kb) 172 173Strain fitness (log2 ratio) -2 -1 0 1 2at 171.644 kb on + strand, within CSW01_14775at 171.746 kb on + strand, within CSW01_14775at 171.754 kb on - strand, within CSW01_14775at 171.812 kb on - strand, within CSW01_14775at 171.828 kb on + strand, within CSW01_14775at 171.905 kb on + strand, within CSW01_14775at 171.971 kb on + strand, within CSW01_14775at 171.982 kb on - strand, within CSW01_14775at 171.993 kb on + strand, within CSW01_14775at 172.028 kb on + strand, within CSW01_14775at 172.051 kb on - strand, within CSW01_14775at 172.062 kb on + strand, within CSW01_14775at 172.062 kb on + strand, within CSW01_14775at 172.070 kb on - strand, within CSW01_14775at 172.213 kb on - strand, within CSW01_14775at 172.243 kb on + strand, within CSW01_14775at 172.253 kb on + strand, within CSW01_14775at 172.256 kb on - strand, within CSW01_14775at 172.265 kb on + strand, within CSW01_14775at 172.281 kb on - strand, within CSW01_14775at 172.356 kb on + strand, within CSW01_14775at 172.423 kb on - strand, within CSW01_14775at 172.434 kb on - strand, within CSW01_14775at 172.507 kb on + strandat 172.574 kb on + strandat 172.589 kb on + strandat 172.597 kb on - strandat 172.597 kb on - strandat 172.617 kb on + strandat 172.632 kb on + strandat 172.771 kb on + strand, within CSW01_14780at 172.804 kb on + strand, within CSW01_14780at 172.804 kb on + strand, within CSW01_14780at 172.845 kb on + strand, within CSW01_14780at 172.868 kb on - strand, within CSW01_14780at 172.997 kb on + strandat 173.000 kb on - strandat 173.000 kb on - strandat 173.100 kb on - strandat 173.131 kb on - strandat 173.150 kb on + strandat 173.164 kb on + strandat 173.172 kb on + strandat 173.180 kb on - strandat 173.219 kb on + strandat 173.224 kb on + strandat 173.264 kb on - strand, within CSW01_14785at 173.285 kb on + strand, within CSW01_14785at 173.293 kb on - strand, within CSW01_14785at 173.298 kb on - strand, within CSW01_14785at 173.309 kb on + strand, within CSW01_14785at 173.320 kb on + strand, within CSW01_14785at 173.330 kb on + strand, within CSW01_14785at 173.557 kb on + strand, within CSW01_14785at 173.557 kb on + strand, within CSW01_14785at 173.570 kb on + strand, within CSW01_14785at 173.570 kb on + strand, within CSW01_14785at 173.570 kb on + strand, within CSW01_14785at 173.570 kb on + strand, within CSW01_14785at 173.570 kb on + strand, within CSW01_14785at 173.578 kb on - strand, within CSW01_14785at 173.578 kb on - strand, within CSW01_14785at 173.578 kb on - strand, within CSW01_14785at 173.578 kb on - strand, within CSW01_14785at 173.578 kb on - strand, within CSW01_14785at 173.578 kb on - strand, within CSW01_14785at 173.609 kb on - strand, within CSW01_14785at 173.630 kb on + strand, within CSW01_14785at 173.630 kb on + strand, within CSW01_14785at 173.638 kb on - strand, within CSW01_14785at 173.732 kb on + strand, within CSW01_14785at 173.732 kb on + strand, within CSW01_14785at 173.732 kb on + strand, within CSW01_14785at 173.740 kb on - strand, within CSW01_14785at 173.765 kb on - strand, within CSW01_14785at 173.765 kb on - strand, within CSW01_14785at 173.794 kb on + strand, within CSW01_14785at 173.830 kb on - strand, within CSW01_14785at 173.832 kb on - strand, within CSW01_14785at 173.832 kb on - strand, within CSW01_14785at 173.847 kb on - strand, within CSW01_14785at 173.943 kb on + strand, within CSW01_14785

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15B
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171,644 + CSW01_14775 0.35 -0.3
171,746 + CSW01_14775 0.42 +0.4
171,754 - CSW01_14775 0.43 +0.2
171,812 - CSW01_14775 0.47 -0.2
171,828 + CSW01_14775 0.48 +0.4
171,905 + CSW01_14775 0.53 +0.4
171,971 + CSW01_14775 0.57 +0.2
171,982 - CSW01_14775 0.58 +0.5
171,993 + CSW01_14775 0.59 -0.1
172,028 + CSW01_14775 0.61 -0.4
172,051 - CSW01_14775 0.63 +0.2
172,062 + CSW01_14775 0.63 -0.8
172,062 + CSW01_14775 0.63 -0.7
172,070 - CSW01_14775 0.64 +0.1
172,213 - CSW01_14775 0.73 +0.6
172,243 + CSW01_14775 0.75 -0.0
172,253 + CSW01_14775 0.76 +0.4
172,256 - CSW01_14775 0.76 -0.0
172,265 + CSW01_14775 0.77 +0.7
172,281 - CSW01_14775 0.78 -0.5
172,356 + CSW01_14775 0.83 +0.3
172,423 - CSW01_14775 0.88 +0.0
172,434 - CSW01_14775 0.88 +0.1
172,507 + +0.3
172,574 + -0.4
172,589 + -0.6
172,597 - +0.1
172,597 - -1.2
172,617 + +0.3
172,632 + +1.1
172,771 + CSW01_14780 0.47 -1.2
172,804 + CSW01_14780 0.56 -1.2
172,804 + CSW01_14780 0.56 -0.2
172,845 + CSW01_14780 0.68 -0.0
172,868 - CSW01_14780 0.74 -0.2
172,997 + -0.1
173,000 - -0.4
173,000 - +0.0
173,100 - +0.0
173,131 - +1.0
173,150 + +1.7
173,164 + +2.1
173,172 + -0.3
173,180 - +0.8
173,219 + +0.7
173,224 + +0.4
173,264 - CSW01_14785 0.11 +0.1
173,285 + CSW01_14785 0.12 +0.8
173,293 - CSW01_14785 0.12 +0.1
173,298 - CSW01_14785 0.13 +0.0
173,309 + CSW01_14785 0.13 +0.4
173,320 + CSW01_14785 0.13 -0.9
173,330 + CSW01_14785 0.14 -0.0
173,557 + CSW01_14785 0.22 +0.7
173,557 + CSW01_14785 0.22 +0.2
173,570 + CSW01_14785 0.23 -0.4
173,570 + CSW01_14785 0.23 +0.3
173,570 + CSW01_14785 0.23 +0.5
173,570 + CSW01_14785 0.23 +0.3
173,570 + CSW01_14785 0.23 -0.4
173,578 - CSW01_14785 0.23 -0.5
173,578 - CSW01_14785 0.23 -0.6
173,578 - CSW01_14785 0.23 +1.1
173,578 - CSW01_14785 0.23 +0.6
173,578 - CSW01_14785 0.23 -1.1
173,578 - CSW01_14785 0.23 -0.1
173,609 - CSW01_14785 0.24 +0.2
173,630 + CSW01_14785 0.25 -0.2
173,630 + CSW01_14785 0.25 -0.2
173,638 - CSW01_14785 0.25 -0.0
173,732 + CSW01_14785 0.29 +1.9
173,732 + CSW01_14785 0.29 -0.8
173,732 + CSW01_14785 0.29 +0.1
173,740 - CSW01_14785 0.29 -0.8
173,765 - CSW01_14785 0.30 -1.0
173,765 - CSW01_14785 0.30 +1.2
173,794 + CSW01_14785 0.31 -1.9
173,830 - CSW01_14785 0.33 +0.8
173,832 - CSW01_14785 0.33 +0.6
173,832 - CSW01_14785 0.33 +0.0
173,847 - CSW01_14785 0.33 +0.7
173,943 + CSW01_14785 0.37 -0.8

Or see this region's nucleotide sequence