Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14655

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14650 and CSW01_14655 overlap by 4 nucleotidesCSW01_14655 and CSW01_14660 are separated by 54 nucleotides CSW01_14650: CSW01_14650 - ribose import ATP-binding protein RbsA, at 142,135 to 143,637 _14650 CSW01_14655: CSW01_14655 - ribose ABC transporter permease, at 143,634 to 144,635 _14655 CSW01_14660: CSW01_14660 - ribose ABC transporter substrate-binding protein RbsB, at 144,690 to 145,574 _14660 Position (kb) 143 144 145Strain fitness (log2 ratio) -2 -1 0 1 2at 142.654 kb on + strand, within CSW01_14650at 142.677 kb on + strand, within CSW01_14650at 142.720 kb on + strand, within CSW01_14650at 142.766 kb on + strand, within CSW01_14650at 142.769 kb on + strand, within CSW01_14650at 142.875 kb on - strand, within CSW01_14650at 142.886 kb on - strand, within CSW01_14650at 142.896 kb on + strand, within CSW01_14650at 142.902 kb on + strand, within CSW01_14650at 142.915 kb on - strand, within CSW01_14650at 142.915 kb on - strand, within CSW01_14650at 142.936 kb on + strand, within CSW01_14650at 142.944 kb on - strand, within CSW01_14650at 142.944 kb on - strand, within CSW01_14650at 142.993 kb on - strand, within CSW01_14650at 142.995 kb on + strand, within CSW01_14650at 142.995 kb on + strand, within CSW01_14650at 143.003 kb on - strand, within CSW01_14650at 143.003 kb on - strand, within CSW01_14650at 143.005 kb on + strand, within CSW01_14650at 143.027 kb on - strand, within CSW01_14650at 143.254 kb on + strand, within CSW01_14650at 143.265 kb on + strand, within CSW01_14650at 143.285 kb on - strand, within CSW01_14650at 143.302 kb on + strand, within CSW01_14650at 143.337 kb on + strand, within CSW01_14650at 143.370 kb on - strand, within CSW01_14650at 143.408 kb on + strand, within CSW01_14650at 143.408 kb on + strand, within CSW01_14650at 143.408 kb on + strand, within CSW01_14650at 143.408 kb on + strand, within CSW01_14650at 143.416 kb on - strand, within CSW01_14650at 143.416 kb on - strand, within CSW01_14650at 143.418 kb on - strand, within CSW01_14650at 143.462 kb on - strand, within CSW01_14650at 143.462 kb on - strand, within CSW01_14650at 143.489 kb on + strandat 143.489 kb on + strandat 143.489 kb on + strandat 143.489 kb on + strandat 143.489 kb on + strandat 143.489 kb on + strandat 143.489 kb on + strandat 143.489 kb on + strandat 143.497 kb on - strandat 143.497 kb on - strandat 143.519 kb on - strandat 143.613 kb on + strandat 143.613 kb on + strandat 143.613 kb on + strandat 143.613 kb on + strandat 143.613 kb on + strandat 143.613 kb on + strandat 143.613 kb on + strandat 143.621 kb on - strandat 143.621 kb on - strandat 143.621 kb on - strandat 143.621 kb on - strandat 143.621 kb on - strandat 143.621 kb on - strandat 143.621 kb on - strandat 143.621 kb on - strandat 143.621 kb on - strandat 143.621 kb on - strandat 143.710 kb on - strandat 143.710 kb on - strandat 143.710 kb on - strandat 143.796 kb on + strand, within CSW01_14655at 143.804 kb on - strand, within CSW01_14655at 143.832 kb on - strand, within CSW01_14655at 143.852 kb on + strand, within CSW01_14655at 143.853 kb on + strand, within CSW01_14655at 143.853 kb on + strand, within CSW01_14655at 143.860 kb on - strand, within CSW01_14655at 143.860 kb on - strand, within CSW01_14655at 143.913 kb on - strand, within CSW01_14655at 143.943 kb on - strand, within CSW01_14655at 143.943 kb on - strand, within CSW01_14655at 143.943 kb on - strand, within CSW01_14655at 143.992 kb on + strand, within CSW01_14655at 144.039 kb on + strand, within CSW01_14655at 144.047 kb on - strand, within CSW01_14655at 144.047 kb on - strand, within CSW01_14655at 144.095 kb on + strand, within CSW01_14655at 144.095 kb on + strand, within CSW01_14655at 144.103 kb on - strand, within CSW01_14655at 144.103 kb on - strand, within CSW01_14655at 144.148 kb on + strand, within CSW01_14655at 144.148 kb on + strand, within CSW01_14655at 144.148 kb on + strand, within CSW01_14655at 144.156 kb on - strand, within CSW01_14655at 144.158 kb on + strand, within CSW01_14655at 144.158 kb on + strand, within CSW01_14655at 144.176 kb on - strand, within CSW01_14655at 144.188 kb on + strand, within CSW01_14655at 144.213 kb on + strand, within CSW01_14655at 144.299 kb on + strand, within CSW01_14655at 144.314 kb on - strand, within CSW01_14655at 144.344 kb on + strand, within CSW01_14655at 144.392 kb on + strand, within CSW01_14655at 144.405 kb on - strand, within CSW01_14655at 144.461 kb on + strand, within CSW01_14655at 144.511 kb on + strand, within CSW01_14655at 144.566 kb on - strandat 144.654 kb on - strandat 144.657 kb on + strandat 144.670 kb on - strandat 144.770 kb on - strandat 144.800 kb on - strand, within CSW01_14660at 144.856 kb on + strand, within CSW01_14660at 144.870 kb on + strand, within CSW01_14660at 144.919 kb on + strand, within CSW01_14660at 144.927 kb on - strand, within CSW01_14660at 144.927 kb on - strand, within CSW01_14660at 144.927 kb on - strand, within CSW01_14660at 145.017 kb on + strand, within CSW01_14660at 145.168 kb on + strand, within CSW01_14660at 145.262 kb on + strand, within CSW01_14660at 145.270 kb on - strand, within CSW01_14660at 145.270 kb on - strand, within CSW01_14660at 145.270 kb on - strand, within CSW01_14660at 145.270 kb on - strand, within CSW01_14660at 145.270 kb on - strand, within CSW01_14660at 145.278 kb on - strand, within CSW01_14660at 145.358 kb on - strand, within CSW01_14660at 145.467 kb on - strand, within CSW01_14660at 145.481 kb on - strand, within CSW01_14660at 145.500 kb on - strandat 145.586 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15B
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142,654 + CSW01_14650 0.35 +0.2
142,677 + CSW01_14650 0.36 -0.6
142,720 + CSW01_14650 0.39 -1.4
142,766 + CSW01_14650 0.42 +0.9
142,769 + CSW01_14650 0.42 -0.2
142,875 - CSW01_14650 0.49 -0.0
142,886 - CSW01_14650 0.50 +0.6
142,896 + CSW01_14650 0.51 -1.0
142,902 + CSW01_14650 0.51 -0.6
142,915 - CSW01_14650 0.52 -0.5
142,915 - CSW01_14650 0.52 +0.8
142,936 + CSW01_14650 0.53 -1.2
142,944 - CSW01_14650 0.54 -0.1
142,944 - CSW01_14650 0.54 +0.5
142,993 - CSW01_14650 0.57 -0.7
142,995 + CSW01_14650 0.57 +0.4
142,995 + CSW01_14650 0.57 -0.3
143,003 - CSW01_14650 0.58 +0.1
143,003 - CSW01_14650 0.58 -0.7
143,005 + CSW01_14650 0.58 -1.6
143,027 - CSW01_14650 0.59 +0.1
143,254 + CSW01_14650 0.74 -0.1
143,265 + CSW01_14650 0.75 -0.0
143,285 - CSW01_14650 0.77 -0.2
143,302 + CSW01_14650 0.78 +0.6
143,337 + CSW01_14650 0.80 +0.3
143,370 - CSW01_14650 0.82 +0.1
143,408 + CSW01_14650 0.85 -0.4
143,408 + CSW01_14650 0.85 +0.6
143,408 + CSW01_14650 0.85 -0.3
143,408 + CSW01_14650 0.85 -0.5
143,416 - CSW01_14650 0.85 +0.4
143,416 - CSW01_14650 0.85 +0.4
143,418 - CSW01_14650 0.85 -0.0
143,462 - CSW01_14650 0.88 -0.8
143,462 - CSW01_14650 0.88 -0.6
143,489 + +0.5
143,489 + -0.3
143,489 + +0.9
143,489 + -0.6
143,489 + -0.5
143,489 + -0.5
143,489 + -0.1
143,489 + +1.7
143,497 - +0.5
143,497 - +1.8
143,519 - -0.2
143,613 + +0.4
143,613 + -0.9
143,613 + -0.6
143,613 + +0.1
143,613 + -1.9
143,613 + +1.2
143,613 + -0.5
143,621 - +2.5
143,621 - +0.2
143,621 - -0.4
143,621 - +1.9
143,621 - -0.9
143,621 - -0.1
143,621 - -0.3
143,621 - +1.7
143,621 - +0.9
143,621 - +0.5
143,710 - -0.5
143,710 - +0.6
143,710 - -1.0
143,796 + CSW01_14655 0.16 +1.4
143,804 - CSW01_14655 0.17 -0.6
143,832 - CSW01_14655 0.20 -0.8
143,852 + CSW01_14655 0.22 +0.5
143,853 + CSW01_14655 0.22 -0.5
143,853 + CSW01_14655 0.22 +0.6
143,860 - CSW01_14655 0.23 +0.2
143,860 - CSW01_14655 0.23 -0.1
143,913 - CSW01_14655 0.28 -0.7
143,943 - CSW01_14655 0.31 -0.0
143,943 - CSW01_14655 0.31 +0.8
143,943 - CSW01_14655 0.31 -0.1
143,992 + CSW01_14655 0.36 +0.4
144,039 + CSW01_14655 0.40 +0.5
144,047 - CSW01_14655 0.41 +0.4
144,047 - CSW01_14655 0.41 +1.7
144,095 + CSW01_14655 0.46 -0.0
144,095 + CSW01_14655 0.46 +1.7
144,103 - CSW01_14655 0.47 -0.3
144,103 - CSW01_14655 0.47 +0.4
144,148 + CSW01_14655 0.51 +2.1
144,148 + CSW01_14655 0.51 -0.3
144,148 + CSW01_14655 0.51 -0.2
144,156 - CSW01_14655 0.52 +0.2
144,158 + CSW01_14655 0.52 -0.3
144,158 + CSW01_14655 0.52 -0.9
144,176 - CSW01_14655 0.54 -0.1
144,188 + CSW01_14655 0.55 +0.0
144,213 + CSW01_14655 0.58 +1.2
144,299 + CSW01_14655 0.66 +1.9
144,314 - CSW01_14655 0.68 +0.4
144,344 + CSW01_14655 0.71 +0.3
144,392 + CSW01_14655 0.76 +0.5
144,405 - CSW01_14655 0.77 -0.1
144,461 + CSW01_14655 0.83 -0.1
144,511 + CSW01_14655 0.88 -0.0
144,566 - -1.3
144,654 - -0.0
144,657 + +0.0
144,670 - +0.4
144,770 - -0.0
144,800 - CSW01_14660 0.12 -0.4
144,856 + CSW01_14660 0.19 +1.7
144,870 + CSW01_14660 0.20 +1.0
144,919 + CSW01_14660 0.26 +0.1
144,927 - CSW01_14660 0.27 +0.6
144,927 - CSW01_14660 0.27 +0.0
144,927 - CSW01_14660 0.27 +0.4
145,017 + CSW01_14660 0.37 -0.1
145,168 + CSW01_14660 0.54 -0.0
145,262 + CSW01_14660 0.65 +0.1
145,270 - CSW01_14660 0.66 +0.7
145,270 - CSW01_14660 0.66 -0.0
145,270 - CSW01_14660 0.66 +0.9
145,270 - CSW01_14660 0.66 -0.0
145,270 - CSW01_14660 0.66 +0.3
145,278 - CSW01_14660 0.66 -0.0
145,358 - CSW01_14660 0.75 -0.6
145,467 - CSW01_14660 0.88 +0.6
145,481 - CSW01_14660 0.89 +0.4
145,500 - +0.4
145,586 - +1.0

Or see this region's nucleotide sequence