Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14285

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14275 and CSW01_14280 overlap by 1 nucleotidesCSW01_14280 and CSW01_14285 are separated by 134 nucleotidesCSW01_14285 and CSW01_14290 overlap by 20 nucleotides CSW01_14275: CSW01_14275 - HlyD family secretion protein, at 54,928 to 56,058 _14275 CSW01_14280: CSW01_14280 - DUF3302 domain-containing protein, at 56,058 to 56,447 _14280 CSW01_14285: CSW01_14285 - GGDEF domain-containing protein, at 56,582 to 58,162 _14285 CSW01_14290: CSW01_14290 - hypothetical protein, at 58,143 to 59,666 _14290 Position (kb) 56 57 58 59Strain fitness (log2 ratio) -3 -2 -1 0 1at 55.650 kb on - strand, within CSW01_14275at 55.703 kb on - strand, within CSW01_14275at 55.704 kb on - strand, within CSW01_14275at 55.710 kb on - strand, within CSW01_14275at 55.722 kb on + strand, within CSW01_14275at 55.790 kb on + strand, within CSW01_14275at 55.791 kb on - strand, within CSW01_14275at 55.796 kb on - strand, within CSW01_14275at 55.797 kb on - strand, within CSW01_14275at 55.896 kb on + strand, within CSW01_14275at 55.960 kb on - strandat 55.967 kb on - strandat 56.030 kb on + strandat 56.103 kb on - strand, within CSW01_14280at 56.130 kb on + strand, within CSW01_14280at 56.226 kb on + strand, within CSW01_14280at 56.249 kb on - strand, within CSW01_14280at 56.386 kb on - strand, within CSW01_14280at 56.386 kb on - strand, within CSW01_14280at 56.545 kb on + strandat 56.573 kb on - strandat 56.624 kb on + strandat 56.624 kb on + strandat 56.632 kb on - strandat 56.632 kb on - strandat 56.632 kb on - strandat 56.632 kb on - strandat 56.678 kb on + strandat 56.996 kb on + strand, within CSW01_14285at 57.010 kb on + strand, within CSW01_14285at 57.018 kb on - strand, within CSW01_14285at 57.051 kb on - strand, within CSW01_14285at 57.086 kb on - strand, within CSW01_14285at 57.257 kb on - strand, within CSW01_14285at 57.257 kb on - strand, within CSW01_14285at 57.302 kb on - strand, within CSW01_14285at 57.302 kb on - strand, within CSW01_14285at 57.368 kb on - strand, within CSW01_14285at 57.373 kb on - strand, within CSW01_14285at 57.415 kb on + strand, within CSW01_14285at 57.476 kb on - strand, within CSW01_14285at 57.476 kb on - strand, within CSW01_14285at 57.478 kb on + strand, within CSW01_14285at 57.526 kb on + strand, within CSW01_14285at 57.539 kb on - strand, within CSW01_14285at 57.546 kb on + strand, within CSW01_14285at 57.554 kb on - strand, within CSW01_14285at 57.576 kb on - strand, within CSW01_14285at 57.754 kb on - strand, within CSW01_14285at 57.755 kb on + strand, within CSW01_14285at 57.798 kb on - strand, within CSW01_14285at 57.818 kb on - strand, within CSW01_14285at 57.849 kb on + strand, within CSW01_14285at 57.849 kb on + strand, within CSW01_14285at 57.859 kb on - strand, within CSW01_14285at 57.905 kb on + strand, within CSW01_14285at 57.983 kb on + strand, within CSW01_14285at 58.043 kb on + strandat 58.186 kb on + strandat 58.215 kb on + strandat 58.262 kb on - strandat 58.262 kb on - strandat 58.363 kb on + strand, within CSW01_14290at 58.410 kb on - strand, within CSW01_14290at 58.460 kb on - strand, within CSW01_14290at 58.489 kb on + strand, within CSW01_14290at 58.489 kb on + strand, within CSW01_14290at 58.489 kb on + strand, within CSW01_14290at 58.489 kb on + strand, within CSW01_14290at 58.489 kb on + strand, within CSW01_14290at 58.489 kb on + strand, within CSW01_14290at 58.489 kb on + strand, within CSW01_14290at 58.497 kb on - strand, within CSW01_14290at 58.497 kb on - strand, within CSW01_14290at 58.497 kb on - strand, within CSW01_14290at 58.497 kb on - strand, within CSW01_14290at 58.499 kb on + strand, within CSW01_14290at 58.539 kb on + strand, within CSW01_14290at 58.649 kb on + strand, within CSW01_14290at 58.816 kb on + strand, within CSW01_14290at 58.818 kb on + strand, within CSW01_14290at 58.826 kb on + strand, within CSW01_14290at 58.867 kb on - strand, within CSW01_14290at 58.967 kb on + strand, within CSW01_14290at 58.967 kb on + strand, within CSW01_14290at 58.975 kb on - strand, within CSW01_14290at 58.975 kb on - strand, within CSW01_14290at 58.975 kb on - strand, within CSW01_14290at 58.975 kb on - strand, within CSW01_14290at 58.975 kb on - strand, within CSW01_14290at 59.056 kb on - strand, within CSW01_14290at 59.102 kb on + strand, within CSW01_14290at 59.105 kb on - strand, within CSW01_14290at 59.105 kb on - strand, within CSW01_14290

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15B
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55,650 - CSW01_14275 0.64 +1.0
55,703 - CSW01_14275 0.69 +0.4
55,704 - CSW01_14275 0.69 +0.5
55,710 - CSW01_14275 0.69 -0.6
55,722 + CSW01_14275 0.70 -1.5
55,790 + CSW01_14275 0.76 -0.1
55,791 - CSW01_14275 0.76 +0.2
55,796 - CSW01_14275 0.77 -0.9
55,797 - CSW01_14275 0.77 +0.2
55,896 + CSW01_14275 0.86 +0.0
55,960 - +0.1
55,967 - -0.2
56,030 + -0.2
56,103 - CSW01_14280 0.12 +0.4
56,130 + CSW01_14280 0.18 +0.5
56,226 + CSW01_14280 0.43 +0.6
56,249 - CSW01_14280 0.49 +0.2
56,386 - CSW01_14280 0.84 -0.9
56,386 - CSW01_14280 0.84 -0.9
56,545 + +0.0
56,573 - +0.1
56,624 + -0.5
56,624 + -0.3
56,632 - -0.6
56,632 - -0.3
56,632 - -0.2
56,632 - -0.2
56,678 + +0.9
56,996 + CSW01_14285 0.26 +0.4
57,010 + CSW01_14285 0.27 -1.2
57,018 - CSW01_14285 0.28 +0.5
57,051 - CSW01_14285 0.30 +0.1
57,086 - CSW01_14285 0.32 +0.7
57,257 - CSW01_14285 0.43 -0.3
57,257 - CSW01_14285 0.43 +0.0
57,302 - CSW01_14285 0.46 +0.1
57,302 - CSW01_14285 0.46 +0.1
57,368 - CSW01_14285 0.50 -0.5
57,373 - CSW01_14285 0.50 -0.7
57,415 + CSW01_14285 0.53 +0.9
57,476 - CSW01_14285 0.57 +0.1
57,476 - CSW01_14285 0.57 +0.0
57,478 + CSW01_14285 0.57 -0.4
57,526 + CSW01_14285 0.60 -1.6
57,539 - CSW01_14285 0.61 -0.2
57,546 + CSW01_14285 0.61 -1.3
57,554 - CSW01_14285 0.61 +0.5
57,576 - CSW01_14285 0.63 -0.2
57,754 - CSW01_14285 0.74 -2.2
57,755 + CSW01_14285 0.74 +0.1
57,798 - CSW01_14285 0.77 +0.8
57,818 - CSW01_14285 0.78 -0.8
57,849 + CSW01_14285 0.80 -0.7
57,849 + CSW01_14285 0.80 -0.1
57,859 - CSW01_14285 0.81 +1.0
57,905 + CSW01_14285 0.84 +1.1
57,983 + CSW01_14285 0.89 +0.2
58,043 + -1.2
58,186 + -0.2
58,215 + -0.3
58,262 - +0.4
58,262 - +0.8
58,363 + CSW01_14290 0.14 +0.4
58,410 - CSW01_14290 0.18 -0.4
58,460 - CSW01_14290 0.21 -1.0
58,489 + CSW01_14290 0.23 +0.4
58,489 + CSW01_14290 0.23 -1.0
58,489 + CSW01_14290 0.23 -0.4
58,489 + CSW01_14290 0.23 -1.2
58,489 + CSW01_14290 0.23 -0.0
58,489 + CSW01_14290 0.23 -0.2
58,489 + CSW01_14290 0.23 -0.3
58,497 - CSW01_14290 0.23 -0.0
58,497 - CSW01_14290 0.23 -0.2
58,497 - CSW01_14290 0.23 +0.1
58,497 - CSW01_14290 0.23 +0.9
58,499 + CSW01_14290 0.23 +1.0
58,539 + CSW01_14290 0.26 -1.6
58,649 + CSW01_14290 0.33 -0.2
58,816 + CSW01_14290 0.44 -3.1
58,818 + CSW01_14290 0.44 -0.3
58,826 + CSW01_14290 0.45 -0.2
58,867 - CSW01_14290 0.48 +1.0
58,967 + CSW01_14290 0.54 -0.0
58,967 + CSW01_14290 0.54 +0.9
58,975 - CSW01_14290 0.55 -0.2
58,975 - CSW01_14290 0.55 +0.7
58,975 - CSW01_14290 0.55 -0.1
58,975 - CSW01_14290 0.55 -0.3
58,975 - CSW01_14290 0.55 +0.9
59,056 - CSW01_14290 0.60 -0.4
59,102 + CSW01_14290 0.63 +0.3
59,105 - CSW01_14290 0.63 -2.1
59,105 - CSW01_14290 0.63 +0.3

Or see this region's nucleotide sequence