Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14215

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14210 and CSW01_14215 are separated by 408 nucleotidesCSW01_14215 and CSW01_14220 are separated by 59 nucleotides CSW01_14210: CSW01_14210 - hypothetical protein, at 39,310 to 39,870 _14210 CSW01_14215: CSW01_14215 - DUF839 domain-containing protein, at 40,279 to 42,153 _14215 CSW01_14220: CSW01_14220 - HDOD domain-containing protein, at 42,213 to 43,085 _14220 Position (kb) 40 41 42 43Strain fitness (log2 ratio) -1 0 1 2 3at 39.307 kb on + strandat 39.315 kb on - strandat 39.315 kb on - strandat 39.315 kb on - strandat 39.315 kb on - strandat 39.315 kb on - strandat 39.447 kb on + strand, within CSW01_14210at 39.467 kb on + strand, within CSW01_14210at 39.509 kb on - strand, within CSW01_14210at 39.509 kb on - strand, within CSW01_14210at 39.509 kb on - strand, within CSW01_14210at 39.509 kb on - strand, within CSW01_14210at 39.509 kb on - strand, within CSW01_14210at 39.512 kb on + strand, within CSW01_14210at 39.530 kb on - strand, within CSW01_14210at 39.539 kb on + strand, within CSW01_14210at 39.766 kb on + strand, within CSW01_14210at 39.827 kb on + strandat 39.905 kb on + strandat 39.970 kb on - strandat 39.974 kb on - strandat 39.996 kb on + strandat 40.003 kb on + strandat 40.003 kb on + strandat 40.004 kb on - strandat 40.004 kb on - strandat 40.008 kb on + strandat 40.008 kb on + strandat 40.011 kb on - strandat 40.011 kb on - strandat 40.198 kb on + strandat 40.225 kb on + strandat 40.361 kb on + strandat 40.361 kb on + strandat 40.526 kb on - strand, within CSW01_14215at 40.665 kb on + strand, within CSW01_14215at 40.814 kb on - strand, within CSW01_14215at 40.870 kb on - strand, within CSW01_14215at 40.870 kb on - strand, within CSW01_14215at 40.918 kb on - strand, within CSW01_14215at 40.930 kb on + strand, within CSW01_14215at 40.972 kb on - strand, within CSW01_14215at 40.979 kb on - strand, within CSW01_14215at 41.035 kb on + strand, within CSW01_14215at 41.043 kb on - strand, within CSW01_14215at 41.118 kb on + strand, within CSW01_14215at 41.125 kb on - strand, within CSW01_14215at 41.177 kb on + strand, within CSW01_14215at 41.182 kb on + strand, within CSW01_14215at 41.197 kb on + strand, within CSW01_14215at 41.295 kb on + strand, within CSW01_14215at 41.353 kb on - strand, within CSW01_14215at 41.426 kb on + strand, within CSW01_14215at 41.431 kb on + strand, within CSW01_14215at 41.439 kb on - strand, within CSW01_14215at 41.439 kb on - strand, within CSW01_14215at 41.596 kb on - strand, within CSW01_14215at 41.812 kb on + strand, within CSW01_14215at 41.830 kb on - strand, within CSW01_14215at 41.844 kb on - strand, within CSW01_14215at 41.890 kb on - strand, within CSW01_14215at 41.890 kb on - strand, within CSW01_14215at 41.890 kb on - strand, within CSW01_14215at 41.926 kb on - strand, within CSW01_14215at 41.953 kb on + strand, within CSW01_14215at 41.953 kb on + strand, within CSW01_14215at 41.955 kb on - strand, within CSW01_14215at 41.969 kb on - strandat 41.969 kb on - strandat 41.972 kb on + strandat 41.972 kb on + strandat 41.972 kb on + strandat 41.995 kb on + strandat 42.010 kb on - strandat 42.108 kb on - strandat 42.130 kb on - strandat 42.234 kb on + strandat 42.297 kb on + strandat 42.369 kb on + strand, within CSW01_14220at 42.495 kb on + strand, within CSW01_14220at 42.549 kb on - strand, within CSW01_14220at 42.588 kb on + strand, within CSW01_14220at 42.592 kb on - strand, within CSW01_14220at 42.620 kb on - strand, within CSW01_14220at 42.628 kb on + strand, within CSW01_14220at 42.636 kb on - strand, within CSW01_14220at 42.670 kb on + strand, within CSW01_14220at 42.673 kb on - strand, within CSW01_14220at 42.988 kb on + strand, within CSW01_14220at 42.988 kb on + strand, within CSW01_14220at 42.988 kb on + strand, within CSW01_14220at 42.996 kb on - strand, within CSW01_14220at 42.996 kb on - strand, within CSW01_14220at 42.996 kb on - strand, within CSW01_14220at 43.005 kb on - strandat 43.018 kb on - strandat 43.059 kb on - strandat 43.068 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15B
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39,307 + +0.1
39,315 - +0.4
39,315 - -0.5
39,315 - +0.1
39,315 - -0.5
39,315 - +1.1
39,447 + CSW01_14210 0.24 +0.0
39,467 + CSW01_14210 0.28 +0.2
39,509 - CSW01_14210 0.35 +0.4
39,509 - CSW01_14210 0.35 -0.8
39,509 - CSW01_14210 0.35 +0.7
39,509 - CSW01_14210 0.35 -0.5
39,509 - CSW01_14210 0.35 +0.8
39,512 + CSW01_14210 0.36 +0.2
39,530 - CSW01_14210 0.39 +0.4
39,539 + CSW01_14210 0.41 +0.8
39,766 + CSW01_14210 0.81 +0.6
39,827 + -0.2
39,905 + +0.1
39,970 - +0.2
39,974 - -0.7
39,996 + -0.4
40,003 + -0.1
40,003 + +0.1
40,004 - -0.0
40,004 - -0.7
40,008 + +0.1
40,008 + -0.5
40,011 - +0.0
40,011 - -0.2
40,198 + +0.3
40,225 + -0.6
40,361 + -0.1
40,361 + -0.1
40,526 - CSW01_14215 0.13 -0.1
40,665 + CSW01_14215 0.21 +0.5
40,814 - CSW01_14215 0.29 +0.2
40,870 - CSW01_14215 0.32 +0.3
40,870 - CSW01_14215 0.32 +0.2
40,918 - CSW01_14215 0.34 +0.4
40,930 + CSW01_14215 0.35 -0.4
40,972 - CSW01_14215 0.37 +0.9
40,979 - CSW01_14215 0.37 +0.2
41,035 + CSW01_14215 0.40 -0.1
41,043 - CSW01_14215 0.41 -0.3
41,118 + CSW01_14215 0.45 -1.2
41,125 - CSW01_14215 0.45 -0.3
41,177 + CSW01_14215 0.48 +1.4
41,182 + CSW01_14215 0.48 -0.1
41,197 + CSW01_14215 0.49 -0.9
41,295 + CSW01_14215 0.54 -1.3
41,353 - CSW01_14215 0.57 +1.8
41,426 + CSW01_14215 0.61 +0.5
41,431 + CSW01_14215 0.61 -1.0
41,439 - CSW01_14215 0.62 -0.0
41,439 - CSW01_14215 0.62 -1.2
41,596 - CSW01_14215 0.70 +0.1
41,812 + CSW01_14215 0.82 +0.2
41,830 - CSW01_14215 0.83 +0.4
41,844 - CSW01_14215 0.83 +0.4
41,890 - CSW01_14215 0.86 +0.2
41,890 - CSW01_14215 0.86 -0.2
41,890 - CSW01_14215 0.86 +0.1
41,926 - CSW01_14215 0.88 +0.2
41,953 + CSW01_14215 0.89 +0.0
41,953 + CSW01_14215 0.89 -0.5
41,955 - CSW01_14215 0.89 +1.4
41,969 - -0.3
41,969 - +0.0
41,972 + +0.6
41,972 + -0.2
41,972 + +0.1
41,995 + -0.4
42,010 - +0.6
42,108 - -1.1
42,130 - -1.1
42,234 + +1.5
42,297 + -0.1
42,369 + CSW01_14220 0.18 -1.6
42,495 + CSW01_14220 0.32 +2.9
42,549 - CSW01_14220 0.38 -0.2
42,588 + CSW01_14220 0.43 +0.6
42,592 - CSW01_14220 0.43 +0.3
42,620 - CSW01_14220 0.47 +1.1
42,628 + CSW01_14220 0.48 -0.2
42,636 - CSW01_14220 0.48 +0.2
42,670 + CSW01_14220 0.52 +0.7
42,673 - CSW01_14220 0.53 -1.3
42,988 + CSW01_14220 0.89 +0.1
42,988 + CSW01_14220 0.89 +0.4
42,988 + CSW01_14220 0.89 -1.3
42,996 - CSW01_14220 0.90 -0.8
42,996 - CSW01_14220 0.90 -0.1
42,996 - CSW01_14220 0.90 +1.4
43,005 - -0.1
43,018 - -0.9
43,059 - -1.5
43,068 + -0.4

Or see this region's nucleotide sequence