Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13590

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_0.5%bileacids_aerobic_180MIN_ZN15B
2,890,261	-				+0.0
2,890,261	-				+0.7
2,890,261	-				+0.3
2,890,262	+				+0.3
2,890,276	+				-1.4
2,890,284	-				+0.7
2,890,317	-				-0.8
2,890,376	+				-1.4
2,890,382	+				+1.6
2,890,404	+				-0.4
2,890,411	+				-0.3
2,890,425	+				+0.2
2,890,425	+				+0.4
2,890,425	+				-0.2
2,890,425	+				+0.1
2,890,425	+				-0.3
2,890,430	+				-0.7
2,890,433	-				-0.5
2,890,438	-				+0.5
2,890,503	+				-0.4
2,890,528	-				-0.0
2,890,620	-		CSW01_13585	0.17	-0.2
2,890,637	-		CSW01_13585	0.20	+0.2
2,890,755	+		CSW01_13585	0.43	+0.4
2,890,786	+		CSW01_13585	0.50	-0.7
2,890,827	-		CSW01_13585	0.58	+0.2
2,890,842	-		CSW01_13585	0.61	-0.8
2,890,935	+		CSW01_13585	0.79	+0.9
2,890,940	+		CSW01_13585	0.80	+0.2
2,890,948	-		CSW01_13585	0.82	-0.3
2,890,950	+		CSW01_13585	0.82	-0.4
2,890,950	+		CSW01_13585	0.82	-0.3
2,890,953	-		CSW01_13585	0.83	-1.0
2,890,958	-		CSW01_13585	0.84	-0.5
2,890,958	-		CSW01_13585	0.84	-1.6
2,890,960	+		CSW01_13585	0.84	-0.5
2,890,960	+		CSW01_13585	0.84	+0.1
2,890,960	+		CSW01_13585	0.84	-0.0
2,890,960	+		CSW01_13585	0.84	+0.1
2,890,965	+		CSW01_13585	0.85	+0.7
2,890,968	-		CSW01_13585	0.86	+0.3
2,890,968	-		CSW01_13585	0.86	-0.3
2,890,968	-		CSW01_13585	0.86	+0.6
2,890,968	-		CSW01_13585	0.86	-0.2
2,890,968	-		CSW01_13585	0.86	-0.0
2,890,968	-		CSW01_13585	0.86	-0.4
2,890,968	-		CSW01_13585	0.86	+0.2
2,890,968	-		CSW01_13585	0.86	+0.1
2,891,056	-				-0.0
2,891,078	-				-0.1
2,891,080	+				+1.6
2,891,080	+				-0.4
2,891,080	+				+0.4
2,891,088	-				+0.3
2,891,088	-				-0.2
2,891,101	+				+0.0
2,891,109	-				-0.3
2,891,126	+				+0.1
2,891,126	+				-0.2
2,891,134	-				-0.3
2,891,136	+				-0.4
2,891,161	-				+0.6
2,891,161	-				-0.7
2,891,192	+				+0.3
2,891,193	+				+2.1
2,891,217	-				+0.3
2,891,224	+				+2.3
2,891,260	+				-0.0
2,891,292	-				+0.2
2,891,371	-		CSW01_13590	0.21	+0.1
2,891,387	+		CSW01_13590	0.23	+0.1
2,891,388	+		CSW01_13590	0.23	+0.3
2,891,390	-		CSW01_13590	0.24	+0.0
2,891,394	+		CSW01_13590	0.24	+0.3
2,891,394	+		CSW01_13590	0.24	-0.8
2,891,395	-		CSW01_13590	0.24	-0.3
2,891,395	-		CSW01_13590	0.24	+0.7
2,891,402	-		CSW01_13590	0.25	+0.2
2,891,402	-		CSW01_13590	0.25	-0.1
2,891,402	-		CSW01_13590	0.25	-0.8
2,891,402	-		CSW01_13590	0.25	+1.1
2,891,402	-		CSW01_13590	0.25	-0.2
2,891,402	-		CSW01_13590	0.25	-0.6
2,891,418	-		CSW01_13590	0.28	+0.1
2,891,420	-		CSW01_13590	0.28	-0.0
2,891,484	+		CSW01_13590	0.37	+1.0
2,891,492	+		CSW01_13590	0.39	-0.4
2,891,492	+		CSW01_13590	0.39	+0.2
2,891,500	-		CSW01_13590	0.40	-0.5
2,891,500	-		CSW01_13590	0.40	-1.0
2,891,500	-		CSW01_13590	0.40	+0.2
2,891,500	-		CSW01_13590	0.40	+0.9
2,891,520	+		CSW01_13590	0.43	-0.5
2,891,536	-		CSW01_13590	0.45	-0.1
2,891,566	+		CSW01_13590	0.49	+0.1
2,891,611	+		CSW01_13590	0.56	-0.1
2,891,642	-		CSW01_13590	0.60	+0.7
2,891,664	-		CSW01_13590	0.64	+0.1
2,891,698	-		CSW01_13590	0.69	+0.2
2,891,735	-		CSW01_13590	0.74	-0.1
2,891,737	+		CSW01_13590	0.74	-1.1
2,891,737	+		CSW01_13590	0.74	+0.0
2,891,737	+		CSW01_13590	0.74	-0.3
2,891,740	-		CSW01_13590	0.75	+0.4
2,891,745	-		CSW01_13590	0.75	-0.5
2,891,745	-		CSW01_13590	0.75	-0.1
2,891,745	-		CSW01_13590	0.75	+0.3
2,891,745	-		CSW01_13590	0.75	-0.2
2,891,745	-		CSW01_13590	0.75	+0.1
2,891,755	-		CSW01_13590	0.77	+0.4
2,891,759	+		CSW01_13590	0.77	+0.6
2,891,759	+		CSW01_13590	0.77	+0.2
2,891,759	+		CSW01_13590	0.77	-0.1
2,891,759	+		CSW01_13590	0.77	+0.2
2,891,759	+		CSW01_13590	0.77	+0.1
2,891,759	+		CSW01_13590	0.77	+0.3
2,891,759	+		CSW01_13590	0.77	+1.0
2,891,759	+		CSW01_13590	0.77	+0.1
2,891,767	-		CSW01_13590	0.79	-1.4
2,891,767	-		CSW01_13590	0.79	+0.3
2,891,767	-		CSW01_13590	0.79	+0.7
2,891,767	-		CSW01_13590	0.79	-0.6
2,891,767	-		CSW01_13590	0.79	+0.4
2,891,767	-		CSW01_13590	0.79	-0.4
2,891,767	-		CSW01_13590	0.79	+1.4
2,891,767	-		CSW01_13590	0.79	+0.0
2,891,767	-		CSW01_13590	0.79	+0.1
2,891,767	-		CSW01_13590	0.79	-0.1
2,891,767	-		CSW01_13590	0.79	-1.1
2,891,767	-		CSW01_13590	0.79	-0.1
2,891,767	-		CSW01_13590	0.79	-0.2
2,891,807	+		CSW01_13590	0.84	+1.8
2,891,815	-		CSW01_13590	0.86	-0.7
2,891,816	+		CSW01_13590	0.86	-0.3
2,891,816	+		CSW01_13590	0.86	+0.1
2,891,816	+		CSW01_13590	0.86	-0.4
2,891,816	+		CSW01_13590	0.86	-0.1
2,891,816	+		CSW01_13590	0.86	-0.1
2,891,816	+		CSW01_13590	0.86	+0.3
2,891,816	+		CSW01_13590	0.86	+0.4
2,891,816	+		CSW01_13590	0.86	-0.8
2,891,816	+		CSW01_13590	0.86	+0.7
2,891,816	+		CSW01_13590	0.86	+1.3
2,891,816	+		CSW01_13590	0.86	+0.1
2,891,816	+		CSW01_13590	0.86	-0.8
2,891,816	+		CSW01_13590	0.86	+1.0
2,891,816	+		CSW01_13590	0.86	-1.0
2,891,816	+		CSW01_13590	0.86	+0.3
2,891,816	+		CSW01_13590	0.86	-0.3
2,891,816	+		CSW01_13590	0.86	+0.1
2,891,816	+		CSW01_13590	0.86	+0.7
2,891,816	+		CSW01_13590	0.86	+0.2
2,891,816	+		CSW01_13590	0.86	+0.3
2,891,816	+		CSW01_13590	0.86	-0.0
2,891,816	+		CSW01_13590	0.86	+0.9
2,891,816	+		CSW01_13590	0.86	-0.1
2,891,816	+		CSW01_13590	0.86	-0.3
2,891,816	+		CSW01_13590	0.86	-1.6
2,891,816	+		CSW01_13590	0.86	-0.4
2,891,816	+		CSW01_13590	0.86	-0.1
2,891,816	+		CSW01_13590	0.86	+0.5
2,891,816	+		CSW01_13590	0.86	-1.5
2,891,817	+		CSW01_13590	0.86	+0.3
2,891,824	-		CSW01_13590	0.87	-0.3
2,891,824	-		CSW01_13590	0.87	-0.2
2,891,824	-		CSW01_13590	0.87	+0.1
2,891,824	-		CSW01_13590	0.87	+0.4
2,891,824	-		CSW01_13590	0.87	-0.4
2,891,824	-		CSW01_13590	0.87	-1.3
2,891,824	-		CSW01_13590	0.87	+1.6
2,891,824	-		CSW01_13590	0.87	-0.3
2,891,824	-		CSW01_13590	0.87	+0.0
2,891,824	-		CSW01_13590	0.87	+1.4
2,891,824	-		CSW01_13590	0.87	-1.7
2,891,824	-		CSW01_13590	0.87	-0.0
2,891,824	-		CSW01_13590	0.87	-1.0
2,891,824	-		CSW01_13590	0.87	+1.2
2,891,824	-		CSW01_13590	0.87	+0.2
2,891,824	-		CSW01_13590	0.87	-0.5
2,891,824	-		CSW01_13590	0.87	-1.0
2,891,824	-		CSW01_13590	0.87	+0.3
2,891,824	-		CSW01_13590	0.87	-0.1
2,891,824	-		CSW01_13590	0.87	+0.8
2,891,824	-		CSW01_13590	0.87	+0.5
2,891,824	-		CSW01_13590	0.87	-0.6
2,891,824	-		CSW01_13590	0.87	+0.8
2,891,824	-		CSW01_13590	0.87	-0.4
2,891,865	+				+1.1
2,891,865	+				-0.4
2,891,865	+				+0.2
2,891,865	+				-0.1
2,891,865	+				+0.2
2,891,865	+				-0.0
2,891,873	-				+1.2
2,891,891	+				-0.3
2,891,899	-				+0.1
2,891,899	-				+0.9
2,891,987	-				-0.1
2,892,000	+				-0.6
2,892,000	+				+0.6
2,892,008	-				+0.5
2,892,008	-				-0.4
2,892,008	-				-0.3
2,892,011	+				+0.2
2,892,016	+				+0.1
2,892,016	+				-0.0
2,892,024	-				+1.1
2,892,025	+				-0.4
2,892,093	-		CSW01_13595	0.13	+0.3
2,892,124	-		CSW01_13595	0.15	-1.0
2,892,152	-		CSW01_13595	0.17	+0.5
2,892,223	+		CSW01_13595	0.22	+0.7
2,892,223	+		CSW01_13595	0.22	-0.2
2,892,223	+		CSW01_13595	0.22	-0.6
2,892,223	+		CSW01_13595	0.22	-0.6
2,892,223	+		CSW01_13595	0.22	-0.4
2,892,231	-		CSW01_13595	0.23	-0.2
2,892,231	-		CSW01_13595	0.23	-0.1
2,892,263	-		CSW01_13595	0.25	+0.2
2,892,321	-		CSW01_13595	0.29	-0.1
2,892,339	-		CSW01_13595	0.31	-0.1
2,892,376	-		CSW01_13595	0.33	-0.4
2,892,376	-		CSW01_13595	0.33	-1.0
2,892,396	-		CSW01_13595	0.35	-0.3
2,892,422	+		CSW01_13595	0.36	-1.8
2,892,458	+		CSW01_13595	0.39	-0.2
2,892,466	-		CSW01_13595	0.40	+0.7
2,892,466	-		CSW01_13595	0.40	-0.4
2,892,466	-		CSW01_13595	0.40	+0.1
2,892,466	-		CSW01_13595	0.40	-1.6
2,892,471	+		CSW01_13595	0.40	-0.1
2,892,486	+		CSW01_13595	0.41	+0.2
2,892,487	+		CSW01_13595	0.41	-0.4
2,892,497	+		CSW01_13595	0.42	-0.4
2,892,500	-		CSW01_13595	0.42	-0.4
2,892,500	-		CSW01_13595	0.42	+0.6
2,892,610	+		CSW01_13595	0.50	+0.2
2,892,610	+		CSW01_13595	0.50	-0.7
2,892,610	+		CSW01_13595	0.50	-0.0
2,892,610	+		CSW01_13595	0.50	+0.2
2,892,610	+		CSW01_13595	0.50	+0.3
2,892,610	+		CSW01_13595	0.50	+0.1
2,892,610	+		CSW01_13595	0.50	-1.6
2,892,610	+		CSW01_13595	0.50	+0.2
2,892,610	+		CSW01_13595	0.50	+0.1
2,892,610	+		CSW01_13595	0.50	+0.0
2,892,610	+		CSW01_13595	0.50	+0.5
2,892,610	+		CSW01_13595	0.50	-0.1
2,892,610	+		CSW01_13595	0.50	+0.3
2,892,618	-		CSW01_13595	0.51	-0.0
2,892,618	-		CSW01_13595	0.51	+0.1
2,892,618	-		CSW01_13595	0.51	+0.1
2,892,618	-		CSW01_13595	0.51	-0.0
2,892,618	-		CSW01_13595	0.51	-0.8
2,892,618	-		CSW01_13595	0.51	-0.1
2,892,618	-		CSW01_13595	0.51	+1.8
2,892,618	-		CSW01_13595	0.51	+0.3
2,892,618	-		CSW01_13595	0.51	-0.3
2,892,618	-		CSW01_13595	0.51	+0.6
2,892,618	-		CSW01_13595	0.51	+0.2
2,892,654	-		CSW01_13595	0.53	+0.5
2,892,775	-		CSW01_13595	0.62	-2.0
2,892,780	+		CSW01_13595	0.62	+0.9
2,892,780	+		CSW01_13595	0.62	+0.2
2,892,780	-		CSW01_13595	0.62	-1.8
2,892,787	+		CSW01_13595	0.63	-0.2
2,892,787	+		CSW01_13595	0.63	-0.1
2,892,787	+		CSW01_13595	0.63	-1.9
2,892,795	-		CSW01_13595	0.63	-0.6
2,892,795	-		CSW01_13595	0.63	-0.4
2,892,890	+		CSW01_13595	0.70	+0.1
2,892,890	+		CSW01_13595	0.70	+0.3
2,892,890	+		CSW01_13595	0.70	-0.2
2,892,898	-		CSW01_13595	0.71	+1.8
2,892,898	-		CSW01_13595	0.71	-0.5
2,892,905	+		CSW01_13595	0.71	-0.2
2,892,913	-		CSW01_13595	0.72	-1.3