Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_09335 and CSW01_09340 are separated by 414 nucleotides CSW01_09340 and CSW01_09345 are separated by 44 nucleotides CSW01_09345 and CSW01_09350 are separated by 265 nucleotides
CSW01_09335: CSW01_09335 - histidine/lysine/arginine/ornithine ABC transporter ATP-binding protein HisP, at 2,002,423 to 2,003,193
_09335
CSW01_09340: CSW01_09340 - hypothetical protein, at 2,003,608 to 2,003,853
_09340
CSW01_09345: CSW01_09345 - DUF3360 domain-containing protein, at 2,003,898 to 2,005,451
_09345
CSW01_09350: CSW01_09350 - formate C-acetyltransferase, at 2,005,717 to 2,007,993
_09350
Position (kb)
2003
2004
2005
2006 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2002.902 kb on - strand, within CSW01_09335 at 2002.953 kb on + strand, within CSW01_09335 at 2002.960 kb on + strand, within CSW01_09335 at 2002.968 kb on - strand, within CSW01_09335 at 2002.968 kb on - strand, within CSW01_09335 at 2003.209 kb on + strand at 2003.259 kb on + strand at 2003.262 kb on - strand at 2003.267 kb on - strand at 2003.267 kb on - strand at 2003.267 kb on - strand at 2003.376 kb on + strand at 2003.558 kb on + strand at 2003.773 kb on - strand, within CSW01_09340 at 2003.797 kb on - strand, within CSW01_09340 at 2003.832 kb on + strand at 2003.865 kb on + strand at 2003.875 kb on + strand at 2003.964 kb on + strand at 2004.003 kb on + strand at 2004.102 kb on + strand, within CSW01_09345 at 2004.152 kb on + strand, within CSW01_09345 at 2004.160 kb on - strand, within CSW01_09345 at 2004.186 kb on - strand, within CSW01_09345 at 2004.195 kb on - strand, within CSW01_09345 at 2004.249 kb on + strand, within CSW01_09345 at 2004.249 kb on + strand, within CSW01_09345 at 2004.251 kb on + strand, within CSW01_09345 at 2004.251 kb on + strand, within CSW01_09345 at 2004.284 kb on + strand, within CSW01_09345 at 2004.347 kb on + strand, within CSW01_09345 at 2004.347 kb on + strand, within CSW01_09345 at 2004.352 kb on + strand, within CSW01_09345 at 2004.352 kb on + strand, within CSW01_09345 at 2004.352 kb on + strand, within CSW01_09345 at 2004.360 kb on - strand, within CSW01_09345 at 2004.360 kb on - strand, within CSW01_09345 at 2004.361 kb on + strand, within CSW01_09345 at 2004.396 kb on + strand, within CSW01_09345 at 2004.442 kb on + strand, within CSW01_09345 at 2004.449 kb on + strand, within CSW01_09345 at 2004.506 kb on - strand, within CSW01_09345 at 2004.557 kb on + strand, within CSW01_09345 at 2004.579 kb on - strand, within CSW01_09345 at 2004.774 kb on - strand, within CSW01_09345 at 2004.785 kb on - strand, within CSW01_09345 at 2004.799 kb on + strand, within CSW01_09345 at 2004.799 kb on + strand, within CSW01_09345 at 2004.799 kb on + strand, within CSW01_09345 at 2004.801 kb on + strand, within CSW01_09345 at 2004.807 kb on - strand, within CSW01_09345 at 2004.807 kb on - strand, within CSW01_09345 at 2004.817 kb on - strand, within CSW01_09345 at 2004.888 kb on + strand, within CSW01_09345 at 2004.891 kb on - strand, within CSW01_09345 at 2004.896 kb on - strand, within CSW01_09345 at 2004.898 kb on + strand, within CSW01_09345 at 2004.906 kb on - strand, within CSW01_09345 at 2004.932 kb on + strand, within CSW01_09345 at 2004.978 kb on + strand, within CSW01_09345 at 2004.981 kb on - strand, within CSW01_09345 at 2004.981 kb on - strand, within CSW01_09345 at 2004.981 kb on - strand, within CSW01_09345 at 2004.995 kb on + strand, within CSW01_09345 at 2005.137 kb on + strand, within CSW01_09345 at 2005.145 kb on - strand, within CSW01_09345 at 2005.145 kb on - strand, within CSW01_09345 at 2005.145 kb on - strand, within CSW01_09345 at 2005.145 kb on - strand, within CSW01_09345 at 2005.147 kb on + strand, within CSW01_09345 at 2005.160 kb on - strand, within CSW01_09345 at 2005.166 kb on + strand, within CSW01_09345 at 2005.166 kb on + strand, within CSW01_09345 at 2005.174 kb on - strand, within CSW01_09345 at 2005.225 kb on - strand, within CSW01_09345 at 2005.261 kb on + strand, within CSW01_09345 at 2005.264 kb on - strand, within CSW01_09345 at 2005.269 kb on - strand, within CSW01_09345 at 2005.279 kb on - strand, within CSW01_09345 at 2005.374 kb on + strand at 2005.645 kb on - strand at 2005.748 kb on + strand at 2005.803 kb on + strand at 2005.803 kb on + strand at 2005.803 kb on + strand at 2005.892 kb on + strand at 2005.900 kb on - strand at 2005.900 kb on - strand at 2005.921 kb on + strand at 2005.947 kb on - strand, within CSW01_09350 at 2005.947 kb on - strand, within CSW01_09350 at 2005.972 kb on + strand, within CSW01_09350 at 2006.023 kb on + strand, within CSW01_09350 at 2006.023 kb on + strand, within CSW01_09350 at 2006.064 kb on + strand, within CSW01_09350 at 2006.072 kb on - strand, within CSW01_09350 at 2006.091 kb on - strand, within CSW01_09350 at 2006.098 kb on - strand, within CSW01_09350 at 2006.123 kb on + strand, within CSW01_09350 at 2006.147 kb on + strand, within CSW01_09350 at 2006.163 kb on + strand, within CSW01_09350 at 2006.261 kb on + strand, within CSW01_09350 at 2006.310 kb on + strand, within CSW01_09350 at 2006.310 kb on + strand, within CSW01_09350 at 2006.318 kb on - strand, within CSW01_09350 at 2006.318 kb on - strand, within CSW01_09350 at 2006.386 kb on + strand, within CSW01_09350 at 2006.394 kb on - strand, within CSW01_09350
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15B remove 2,002,902 - CSW01_09335 0.62 +0.8 2,002,953 + CSW01_09335 0.69 +0.4 2,002,960 + CSW01_09335 0.70 +0.2 2,002,968 - CSW01_09335 0.71 +0.0 2,002,968 - CSW01_09335 0.71 +0.4 2,003,209 + -0.2 2,003,259 + -0.1 2,003,262 - -1.1 2,003,267 - +0.1 2,003,267 - +0.4 2,003,267 - -0.8 2,003,376 + -0.4 2,003,558 + +0.1 2,003,773 - CSW01_09340 0.67 +1.2 2,003,797 - CSW01_09340 0.77 -0.0 2,003,832 + -0.3 2,003,865 + +0.1 2,003,875 + -0.3 2,003,964 + -0.0 2,004,003 + -0.4 2,004,102 + CSW01_09345 0.13 -0.3 2,004,152 + CSW01_09345 0.16 +0.5 2,004,160 - CSW01_09345 0.17 -0.7 2,004,186 - CSW01_09345 0.19 -1.1 2,004,195 - CSW01_09345 0.19 -0.2 2,004,249 + CSW01_09345 0.23 +0.1 2,004,249 + CSW01_09345 0.23 +1.2 2,004,251 + CSW01_09345 0.23 +0.9 2,004,251 + CSW01_09345 0.23 +0.3 2,004,284 + CSW01_09345 0.25 -0.7 2,004,347 + CSW01_09345 0.29 -0.4 2,004,347 + CSW01_09345 0.29 +2.5 2,004,352 + CSW01_09345 0.29 +0.1 2,004,352 + CSW01_09345 0.29 -0.4 2,004,352 + CSW01_09345 0.29 +0.1 2,004,360 - CSW01_09345 0.30 -0.2 2,004,360 - CSW01_09345 0.30 -0.2 2,004,361 + CSW01_09345 0.30 +1.2 2,004,396 + CSW01_09345 0.32 +0.6 2,004,442 + CSW01_09345 0.35 -0.6 2,004,449 + CSW01_09345 0.35 -0.0 2,004,506 - CSW01_09345 0.39 +0.8 2,004,557 + CSW01_09345 0.42 +1.2 2,004,579 - CSW01_09345 0.44 +0.0 2,004,774 - CSW01_09345 0.56 -0.6 2,004,785 - CSW01_09345 0.57 +0.6 2,004,799 + CSW01_09345 0.58 +0.4 2,004,799 + CSW01_09345 0.58 -0.8 2,004,799 + CSW01_09345 0.58 -0.0 2,004,801 + CSW01_09345 0.58 -0.6 2,004,807 - CSW01_09345 0.58 +1.1 2,004,807 - CSW01_09345 0.58 -0.4 2,004,817 - CSW01_09345 0.59 +0.1 2,004,888 + CSW01_09345 0.64 +1.0 2,004,891 - CSW01_09345 0.64 +0.0 2,004,896 - CSW01_09345 0.64 -1.2 2,004,898 + CSW01_09345 0.64 +0.4 2,004,906 - CSW01_09345 0.65 +0.6 2,004,932 + CSW01_09345 0.67 -0.4 2,004,978 + CSW01_09345 0.69 +1.7 2,004,981 - CSW01_09345 0.70 +3.7 2,004,981 - CSW01_09345 0.70 -0.1 2,004,981 - CSW01_09345 0.70 +0.2 2,004,995 + CSW01_09345 0.71 +1.0 2,005,137 + CSW01_09345 0.80 +0.9 2,005,145 - CSW01_09345 0.80 +0.6 2,005,145 - CSW01_09345 0.80 -0.2 2,005,145 - CSW01_09345 0.80 +0.1 2,005,145 - CSW01_09345 0.80 +0.7 2,005,147 + CSW01_09345 0.80 -0.0 2,005,160 - CSW01_09345 0.81 +0.1 2,005,166 + CSW01_09345 0.82 +0.7 2,005,166 + CSW01_09345 0.82 +0.5 2,005,174 - CSW01_09345 0.82 +2.4 2,005,225 - CSW01_09345 0.85 +0.9 2,005,261 + CSW01_09345 0.88 +0.5 2,005,264 - CSW01_09345 0.88 -0.1 2,005,269 - CSW01_09345 0.88 +0.3 2,005,279 - CSW01_09345 0.89 -0.1 2,005,374 + -1.1 2,005,645 - -0.1 2,005,748 + +0.2 2,005,803 + -0.3 2,005,803 + +0.8 2,005,803 + +0.5 2,005,892 + +0.2 2,005,900 - +0.7 2,005,900 - +0.2 2,005,921 + +2.0 2,005,947 - CSW01_09350 0.10 +0.2 2,005,947 - CSW01_09350 0.10 +0.7 2,005,972 + CSW01_09350 0.11 -0.6 2,006,023 + CSW01_09350 0.13 +0.7 2,006,023 + CSW01_09350 0.13 +1.4 2,006,064 + CSW01_09350 0.15 +0.6 2,006,072 - CSW01_09350 0.16 -0.2 2,006,091 - CSW01_09350 0.16 +0.0 2,006,098 - CSW01_09350 0.17 +0.7 2,006,123 + CSW01_09350 0.18 +3.6 2,006,147 + CSW01_09350 0.19 +0.8 2,006,163 + CSW01_09350 0.20 -0.7 2,006,261 + CSW01_09350 0.24 -0.0 2,006,310 + CSW01_09350 0.26 +0.3 2,006,310 + CSW01_09350 0.26 -0.1 2,006,318 - CSW01_09350 0.26 -0.4 2,006,318 - CSW01_09350 0.26 -0.2 2,006,386 + CSW01_09350 0.29 +0.9 2,006,394 - CSW01_09350 0.30 +0.1
Or see this region's nucleotide sequence