Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_08420

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_08415 and CSW01_08420 overlap by 29 nucleotidesCSW01_08420 and CSW01_08425 are separated by 171 nucleotidesCSW01_08425 and CSW01_08430 overlap by 35 nucleotidesCSW01_08430 and CSW01_08435 are separated by 13 nucleotides CSW01_08415: CSW01_08415 - efflux RND transporter periplasmic adaptor subunit, at 1,807,656 to 1,808,765 _08415 CSW01_08420: CSW01_08420 - efflux RND transporter periplasmic adaptor subunit, at 1,808,737 to 1,809,768 _08420 CSW01_08425: CSW01_08425 - envelope stress response membrane protein PspC, at 1,809,940 to 1,810,356 _08425 CSW01_08430: CSW01_08430 - envelope stress response membrane protein PspB, at 1,810,322 to 1,810,555 _08430 CSW01_08435: CSW01_08435 - phage shock protein PspA, at 1,810,569 to 1,811,237 _08435 Position (kb) 1808 1809 1810Strain fitness (log2 ratio) -2 -1 0 1at 1807.758 kb on + strandat 1807.766 kb on - strandat 1807.766 kb on - strandat 1807.766 kb on - strandat 1807.766 kb on - strandat 1807.911 kb on + strand, within CSW01_08415at 1807.924 kb on - strand, within CSW01_08415at 1807.929 kb on + strand, within CSW01_08415at 1807.936 kb on - strand, within CSW01_08415at 1807.947 kb on + strand, within CSW01_08415at 1807.987 kb on + strand, within CSW01_08415at 1807.987 kb on + strand, within CSW01_08415at 1807.987 kb on + strand, within CSW01_08415at 1807.987 kb on + strand, within CSW01_08415at 1807.995 kb on - strand, within CSW01_08415at 1807.995 kb on - strand, within CSW01_08415at 1808.036 kb on + strand, within CSW01_08415at 1808.039 kb on - strand, within CSW01_08415at 1808.065 kb on + strand, within CSW01_08415at 1808.098 kb on + strand, within CSW01_08415at 1808.106 kb on - strand, within CSW01_08415at 1808.106 kb on - strand, within CSW01_08415at 1808.115 kb on + strand, within CSW01_08415at 1808.221 kb on + strand, within CSW01_08415at 1808.229 kb on - strand, within CSW01_08415at 1808.231 kb on + strand, within CSW01_08415at 1808.476 kb on - strand, within CSW01_08415at 1808.490 kb on + strand, within CSW01_08415at 1808.716 kb on - strandat 1808.769 kb on + strandat 1808.769 kb on + strandat 1808.777 kb on - strandat 1808.777 kb on - strandat 1808.777 kb on - strandat 1808.832 kb on - strandat 1808.886 kb on - strand, within CSW01_08420at 1808.932 kb on + strand, within CSW01_08420at 1808.944 kb on + strand, within CSW01_08420at 1808.965 kb on + strand, within CSW01_08420at 1808.987 kb on - strand, within CSW01_08420at 1809.141 kb on + strand, within CSW01_08420at 1809.149 kb on - strand, within CSW01_08420at 1809.239 kb on - strand, within CSW01_08420at 1809.264 kb on + strand, within CSW01_08420at 1809.272 kb on - strand, within CSW01_08420at 1809.272 kb on - strand, within CSW01_08420at 1809.311 kb on + strand, within CSW01_08420at 1809.319 kb on - strand, within CSW01_08420at 1809.319 kb on - strand, within CSW01_08420at 1809.319 kb on - strand, within CSW01_08420at 1809.319 kb on - strand, within CSW01_08420at 1809.356 kb on - strand, within CSW01_08420at 1809.461 kb on + strand, within CSW01_08420at 1809.466 kb on + strand, within CSW01_08420at 1809.497 kb on + strand, within CSW01_08420at 1809.500 kb on - strand, within CSW01_08420at 1809.513 kb on + strand, within CSW01_08420at 1809.531 kb on + strand, within CSW01_08420at 1809.564 kb on - strand, within CSW01_08420at 1809.648 kb on - strand, within CSW01_08420at 1809.895 kb on + strandat 1809.935 kb on + strandat 1809.965 kb on + strandat 1809.975 kb on + strandat 1809.975 kb on + strandat 1810.129 kb on + strand, within CSW01_08425at 1810.153 kb on + strand, within CSW01_08425at 1810.236 kb on + strand, within CSW01_08425at 1810.242 kb on + strand, within CSW01_08425at 1810.248 kb on + strand, within CSW01_08425at 1810.279 kb on - strand, within CSW01_08425at 1810.315 kb on - strandat 1810.429 kb on - strand, within CSW01_08430at 1810.579 kb on + strandat 1810.584 kb on + strandat 1810.591 kb on + strandat 1810.622 kb on + strandat 1810.652 kb on + strand, within CSW01_08435at 1810.652 kb on + strand, within CSW01_08435at 1810.660 kb on - strand, within CSW01_08435at 1810.660 kb on - strand, within CSW01_08435

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15B
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1,807,758 + +0.1
1,807,766 - -1.7
1,807,766 - +0.3
1,807,766 - +0.2
1,807,766 - +0.3
1,807,911 + CSW01_08415 0.23 +0.1
1,807,924 - CSW01_08415 0.24 +0.3
1,807,929 + CSW01_08415 0.25 +0.1
1,807,936 - CSW01_08415 0.25 -0.9
1,807,947 + CSW01_08415 0.26 +0.6
1,807,987 + CSW01_08415 0.30 +0.0
1,807,987 + CSW01_08415 0.30 +1.3
1,807,987 + CSW01_08415 0.30 -0.4
1,807,987 + CSW01_08415 0.30 -0.1
1,807,995 - CSW01_08415 0.31 -1.7
1,807,995 - CSW01_08415 0.31 -0.8
1,808,036 + CSW01_08415 0.34 -0.7
1,808,039 - CSW01_08415 0.35 -0.0
1,808,065 + CSW01_08415 0.37 +0.3
1,808,098 + CSW01_08415 0.40 -0.1
1,808,106 - CSW01_08415 0.41 -1.2
1,808,106 - CSW01_08415 0.41 +0.3
1,808,115 + CSW01_08415 0.41 +0.4
1,808,221 + CSW01_08415 0.51 +0.6
1,808,229 - CSW01_08415 0.52 +1.4
1,808,231 + CSW01_08415 0.52 -0.5
1,808,476 - CSW01_08415 0.74 +0.7
1,808,490 + CSW01_08415 0.75 +0.2
1,808,716 - +0.3
1,808,769 + +0.0
1,808,769 + +0.9
1,808,777 - -0.7
1,808,777 - +0.3
1,808,777 - -0.7
1,808,832 - -0.2
1,808,886 - CSW01_08420 0.14 +0.3
1,808,932 + CSW01_08420 0.19 -1.5
1,808,944 + CSW01_08420 0.20 -0.2
1,808,965 + CSW01_08420 0.22 -1.4
1,808,987 - CSW01_08420 0.24 -1.5
1,809,141 + CSW01_08420 0.39 -0.5
1,809,149 - CSW01_08420 0.40 -0.3
1,809,239 - CSW01_08420 0.49 -1.2
1,809,264 + CSW01_08420 0.51 -0.5
1,809,272 - CSW01_08420 0.52 +1.4
1,809,272 - CSW01_08420 0.52 -0.2
1,809,311 + CSW01_08420 0.56 -0.8
1,809,319 - CSW01_08420 0.56 +1.5
1,809,319 - CSW01_08420 0.56 -0.6
1,809,319 - CSW01_08420 0.56 -0.5
1,809,319 - CSW01_08420 0.56 +0.5
1,809,356 - CSW01_08420 0.60 +0.1
1,809,461 + CSW01_08420 0.70 -0.1
1,809,466 + CSW01_08420 0.71 +1.1
1,809,497 + CSW01_08420 0.74 -0.1
1,809,500 - CSW01_08420 0.74 -0.8
1,809,513 + CSW01_08420 0.75 +0.3
1,809,531 + CSW01_08420 0.77 +0.3
1,809,564 - CSW01_08420 0.80 -0.8
1,809,648 - CSW01_08420 0.88 +0.4
1,809,895 + -1.9
1,809,935 + +0.5
1,809,965 + +0.5
1,809,975 + +0.3
1,809,975 + +0.2
1,810,129 + CSW01_08425 0.45 -0.6
1,810,153 + CSW01_08425 0.51 +0.6
1,810,236 + CSW01_08425 0.71 -0.5
1,810,242 + CSW01_08425 0.72 +1.5
1,810,248 + CSW01_08425 0.74 -0.1
1,810,279 - CSW01_08425 0.81 -0.5
1,810,315 - -0.5
1,810,429 - CSW01_08430 0.46 -0.3
1,810,579 + -0.4
1,810,584 + +1.5
1,810,591 + +0.3
1,810,622 + +0.5
1,810,652 + CSW01_08435 0.12 -0.2
1,810,652 + CSW01_08435 0.12 -0.5
1,810,660 - CSW01_08435 0.14 +1.1
1,810,660 - CSW01_08435 0.14 -0.3

Or see this region's nucleotide sequence