Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_06030

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_06025 and CSW01_06030 are separated by 165 nucleotidesCSW01_06030 and CSW01_06035 are separated by 291 nucleotidesCSW01_06035 and CSW01_06040 are separated by 135 nucleotides CSW01_06025: CSW01_06025 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 1,263,178 to 1,264,284 _06025 CSW01_06030: CSW01_06030 - helicase, at 1,264,450 to 1,264,848 _06030 CSW01_06035: CSW01_06035 - hypothetical protein, at 1,265,140 to 1,265,337 _06035 CSW01_06040: CSW01_06040 - molecular chaperone DnaJ, at 1,265,473 to 1,266,525 _06040 Position (kb) 1264 1265Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1263.470 kb on + strand, within CSW01_06025at 1263.486 kb on + strand, within CSW01_06025at 1263.486 kb on + strand, within CSW01_06025at 1263.494 kb on - strand, within CSW01_06025at 1263.494 kb on - strand, within CSW01_06025at 1263.590 kb on - strand, within CSW01_06025at 1263.623 kb on + strand, within CSW01_06025at 1263.645 kb on + strand, within CSW01_06025at 1263.653 kb on - strand, within CSW01_06025at 1263.653 kb on - strand, within CSW01_06025at 1263.653 kb on - strand, within CSW01_06025at 1263.670 kb on + strand, within CSW01_06025at 1263.678 kb on - strand, within CSW01_06025at 1263.781 kb on - strand, within CSW01_06025at 1263.804 kb on + strand, within CSW01_06025at 1263.812 kb on - strand, within CSW01_06025at 1263.812 kb on - strand, within CSW01_06025at 1263.822 kb on + strand, within CSW01_06025at 1263.848 kb on + strand, within CSW01_06025at 1263.849 kb on - strand, within CSW01_06025at 1264.004 kb on - strand, within CSW01_06025at 1264.019 kb on + strand, within CSW01_06025at 1264.034 kb on + strand, within CSW01_06025at 1264.034 kb on + strand, within CSW01_06025at 1264.174 kb on + strandat 1264.182 kb on - strandat 1264.221 kb on - strandat 1264.363 kb on - strandat 1264.458 kb on + strandat 1264.488 kb on + strandat 1264.511 kb on - strand, within CSW01_06030at 1264.524 kb on + strand, within CSW01_06030at 1264.524 kb on + strand, within CSW01_06030at 1264.714 kb on - strand, within CSW01_06030at 1264.845 kb on + strandat 1265.084 kb on - strandat 1265.233 kb on + strand, within CSW01_06035at 1265.267 kb on - strand, within CSW01_06035at 1265.320 kb on - strandat 1265.530 kb on + strandat 1265.547 kb on - strandat 1265.565 kb on + strandat 1265.573 kb on - strandat 1265.573 kb on - strandat 1265.653 kb on + strand, within CSW01_06040at 1265.706 kb on - strand, within CSW01_06040

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15B
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1,263,470 + CSW01_06025 0.26 +0.1
1,263,486 + CSW01_06025 0.28 -1.1
1,263,486 + CSW01_06025 0.28 -0.3
1,263,494 - CSW01_06025 0.29 +2.9
1,263,494 - CSW01_06025 0.29 +3.0
1,263,590 - CSW01_06025 0.37 +1.0
1,263,623 + CSW01_06025 0.40 +0.2
1,263,645 + CSW01_06025 0.42 +0.1
1,263,653 - CSW01_06025 0.43 -0.5
1,263,653 - CSW01_06025 0.43 +0.0
1,263,653 - CSW01_06025 0.43 +0.2
1,263,670 + CSW01_06025 0.44 -0.3
1,263,678 - CSW01_06025 0.45 -0.5
1,263,781 - CSW01_06025 0.54 +1.7
1,263,804 + CSW01_06025 0.57 -1.5
1,263,812 - CSW01_06025 0.57 -0.4
1,263,812 - CSW01_06025 0.57 -0.8
1,263,822 + CSW01_06025 0.58 +0.2
1,263,848 + CSW01_06025 0.61 +0.0
1,263,849 - CSW01_06025 0.61 -0.2
1,264,004 - CSW01_06025 0.75 -0.2
1,264,019 + CSW01_06025 0.76 -1.2
1,264,034 + CSW01_06025 0.77 +0.5
1,264,034 + CSW01_06025 0.77 -0.3
1,264,174 + +1.0
1,264,182 - +0.1
1,264,221 - -0.4
1,264,363 - +0.7
1,264,458 + +0.1
1,264,488 + +0.3
1,264,511 - CSW01_06030 0.15 -1.9
1,264,524 + CSW01_06030 0.19 -0.2
1,264,524 + CSW01_06030 0.19 -0.1
1,264,714 - CSW01_06030 0.66 +0.3
1,264,845 + +0.5
1,265,084 - -0.2
1,265,233 + CSW01_06035 0.47 +0.3
1,265,267 - CSW01_06035 0.64 +0.8
1,265,320 - -0.9
1,265,530 + +0.9
1,265,547 - +0.6
1,265,565 + +1.1
1,265,573 - +0.9
1,265,573 - -0.1
1,265,653 + CSW01_06040 0.17 +0.3
1,265,706 - CSW01_06040 0.22 +0.7

Or see this region's nucleotide sequence