Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04910

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04900 and CSW01_04905 are separated by 69 nucleotidesCSW01_04905 and CSW01_04910 overlap by 4 nucleotidesCSW01_04910 and CSW01_04915 are separated by 67 nucleotides CSW01_04900: CSW01_04900 - magnesium and cobalt efflux protein CorC, at 1,022,351 to 1,023,226 _04900 CSW01_04905: CSW01_04905 - endoribonuclease YbeY, at 1,023,296 to 1,023,760 _04905 CSW01_04910: CSW01_04910 - PhoH family protein, at 1,023,757 to 1,024,860 _04910 CSW01_04915: CSW01_04915 - tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB, at 1,024,928 to 1,026,352 _04915 Position (kb) 1023 1024 1025Strain fitness (log2 ratio) -3 -2 -1 0 1at 1022.900 kb on + strand, within CSW01_04900at 1022.908 kb on - strand, within CSW01_04900at 1022.908 kb on - strand, within CSW01_04900at 1022.908 kb on - strand, within CSW01_04900at 1022.923 kb on + strand, within CSW01_04900at 1022.936 kb on - strand, within CSW01_04900at 1022.936 kb on - strand, within CSW01_04900at 1023.062 kb on - strand, within CSW01_04900at 1023.144 kb on - strandat 1023.295 kb on - strandat 1023.301 kb on - strandat 1023.858 kb on - strandat 1023.858 kb on - strandat 1023.985 kb on - strand, within CSW01_04910at 1024.008 kb on - strand, within CSW01_04910at 1024.574 kb on - strand, within CSW01_04910at 1024.699 kb on - strand, within CSW01_04910at 1024.699 kb on - strand, within CSW01_04910at 1024.916 kb on + strandat 1024.924 kb on - strandat 1024.947 kb on + strandat 1024.947 kb on + strandat 1025.177 kb on + strand, within CSW01_04915at 1025.200 kb on + strand, within CSW01_04915at 1025.200 kb on + strand, within CSW01_04915at 1025.208 kb on - strand, within CSW01_04915at 1025.208 kb on - strand, within CSW01_04915at 1025.208 kb on - strand, within CSW01_04915at 1025.208 kb on - strand, within CSW01_04915at 1025.208 kb on - strand, within CSW01_04915at 1025.286 kb on + strand, within CSW01_04915at 1025.303 kb on + strand, within CSW01_04915at 1025.326 kb on - strand, within CSW01_04915at 1025.383 kb on + strand, within CSW01_04915at 1025.383 kb on + strand, within CSW01_04915at 1025.391 kb on - strand, within CSW01_04915at 1025.391 kb on - strand, within CSW01_04915at 1025.474 kb on - strand, within CSW01_04915at 1025.474 kb on - strand, within CSW01_04915at 1025.581 kb on + strand, within CSW01_04915at 1025.581 kb on + strand, within CSW01_04915at 1025.589 kb on - strand, within CSW01_04915at 1025.604 kb on + strand, within CSW01_04915at 1025.604 kb on + strand, within CSW01_04915at 1025.612 kb on - strand, within CSW01_04915at 1025.687 kb on + strand, within CSW01_04915at 1025.741 kb on - strand, within CSW01_04915

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15B
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1,022,900 + CSW01_04900 0.63 -0.4
1,022,908 - CSW01_04900 0.64 +0.2
1,022,908 - CSW01_04900 0.64 -0.1
1,022,908 - CSW01_04900 0.64 +0.1
1,022,923 + CSW01_04900 0.65 +0.7
1,022,936 - CSW01_04900 0.67 -0.2
1,022,936 - CSW01_04900 0.67 +0.6
1,023,062 - CSW01_04900 0.81 +0.0
1,023,144 - -0.8
1,023,295 - +0.0
1,023,301 - +0.6
1,023,858 - -2.7
1,023,858 - -0.2
1,023,985 - CSW01_04910 0.21 -0.4
1,024,008 - CSW01_04910 0.23 -0.0
1,024,574 - CSW01_04910 0.74 -0.4
1,024,699 - CSW01_04910 0.85 -0.4
1,024,699 - CSW01_04910 0.85 -3.4
1,024,916 + -2.6
1,024,924 - +0.3
1,024,947 + +0.3
1,024,947 + -1.3
1,025,177 + CSW01_04915 0.17 +0.8
1,025,200 + CSW01_04915 0.19 +0.6
1,025,200 + CSW01_04915 0.19 +1.4
1,025,208 - CSW01_04915 0.20 +0.7
1,025,208 - CSW01_04915 0.20 +0.4
1,025,208 - CSW01_04915 0.20 +0.3
1,025,208 - CSW01_04915 0.20 +0.7
1,025,208 - CSW01_04915 0.20 +0.1
1,025,286 + CSW01_04915 0.25 +0.8
1,025,303 + CSW01_04915 0.26 -0.2
1,025,326 - CSW01_04915 0.28 -0.1
1,025,383 + CSW01_04915 0.32 +0.2
1,025,383 + CSW01_04915 0.32 -1.0
1,025,391 - CSW01_04915 0.32 -0.1
1,025,391 - CSW01_04915 0.32 -1.9
1,025,474 - CSW01_04915 0.38 -0.1
1,025,474 - CSW01_04915 0.38 -0.1
1,025,581 + CSW01_04915 0.46 -0.4
1,025,581 + CSW01_04915 0.46 -0.3
1,025,589 - CSW01_04915 0.46 -0.2
1,025,604 + CSW01_04915 0.47 -0.5
1,025,604 + CSW01_04915 0.47 +0.8
1,025,612 - CSW01_04915 0.48 -0.5
1,025,687 + CSW01_04915 0.53 +0.1
1,025,741 - CSW01_04915 0.57 -0.3

Or see this region's nucleotide sequence