Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04720

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04710 and CSW01_04715 overlap by 4 nucleotidesCSW01_04715 and CSW01_04720 overlap by 4 nucleotidesCSW01_04720 and CSW01_04725 overlap by 4 nucleotides CSW01_04710: CSW01_04710 - UDP-N-acetyl-D-mannosamine dehydrogenase, at 979,334 to 980,575 _04710 CSW01_04715: CSW01_04715 - serine acetyltransferase, at 980,572 to 981,126 _04715 CSW01_04720: CSW01_04720 - glycosyl transferase family 1, at 981,123 to 982,271 _04720 CSW01_04725: CSW01_04725 - sugar transporter, at 982,268 to 983,677 _04725 Position (kb) 981 982 983Strain fitness (log2 ratio) -2 -1 0 1 2 3at 980.125 kb on + strand, within CSW01_04710at 980.138 kb on - strand, within CSW01_04710at 980.180 kb on + strand, within CSW01_04710at 980.188 kb on - strand, within CSW01_04710at 980.198 kb on - strand, within CSW01_04710at 980.219 kb on + strand, within CSW01_04710at 980.288 kb on + strand, within CSW01_04710at 980.288 kb on + strand, within CSW01_04710at 980.333 kb on + strand, within CSW01_04710at 980.341 kb on - strand, within CSW01_04710at 980.341 kb on - strand, within CSW01_04710at 980.460 kb on + strandat 980.468 kb on - strandat 980.592 kb on + strandat 980.600 kb on - strandat 980.600 kb on - strandat 980.600 kb on - strandat 980.630 kb on + strand, within CSW01_04715at 980.630 kb on + strand, within CSW01_04715at 980.638 kb on - strand, within CSW01_04715at 980.638 kb on - strand, within CSW01_04715at 980.695 kb on - strand, within CSW01_04715at 980.803 kb on + strand, within CSW01_04715at 980.803 kb on + strand, within CSW01_04715at 980.811 kb on - strand, within CSW01_04715at 980.811 kb on - strand, within CSW01_04715at 980.887 kb on - strand, within CSW01_04715at 980.995 kb on + strand, within CSW01_04715at 981.003 kb on - strand, within CSW01_04715at 981.059 kb on - strand, within CSW01_04715at 981.089 kb on + strandat 981.125 kb on + strandat 981.223 kb on - strandat 981.236 kb on - strandat 981.262 kb on + strand, within CSW01_04720at 981.270 kb on - strand, within CSW01_04720at 981.284 kb on + strand, within CSW01_04720at 981.318 kb on + strand, within CSW01_04720at 981.365 kb on + strand, within CSW01_04720at 981.365 kb on + strand, within CSW01_04720at 981.440 kb on + strand, within CSW01_04720at 981.452 kb on - strand, within CSW01_04720at 981.454 kb on - strand, within CSW01_04720at 981.489 kb on + strand, within CSW01_04720at 981.489 kb on + strand, within CSW01_04720at 981.497 kb on - strand, within CSW01_04720at 981.576 kb on - strand, within CSW01_04720at 981.682 kb on + strand, within CSW01_04720at 981.685 kb on - strand, within CSW01_04720at 981.713 kb on + strand, within CSW01_04720at 981.722 kb on + strand, within CSW01_04720at 981.756 kb on - strand, within CSW01_04720at 981.792 kb on + strand, within CSW01_04720at 981.800 kb on - strand, within CSW01_04720at 981.805 kb on + strand, within CSW01_04720at 981.805 kb on + strand, within CSW01_04720at 981.805 kb on + strand, within CSW01_04720at 981.805 kb on + strand, within CSW01_04720at 981.813 kb on - strand, within CSW01_04720at 981.813 kb on - strand, within CSW01_04720at 981.813 kb on - strand, within CSW01_04720at 981.813 kb on - strand, within CSW01_04720at 981.813 kb on - strand, within CSW01_04720at 981.813 kb on - strand, within CSW01_04720at 981.899 kb on + strand, within CSW01_04720at 981.934 kb on + strand, within CSW01_04720at 981.934 kb on + strand, within CSW01_04720at 981.934 kb on + strand, within CSW01_04720at 981.934 kb on + strand, within CSW01_04720at 981.944 kb on + strand, within CSW01_04720at 982.005 kb on + strand, within CSW01_04720at 982.012 kb on + strand, within CSW01_04720at 982.093 kb on + strand, within CSW01_04720at 982.157 kb on - strandat 982.298 kb on + strandat 982.366 kb on + strandat 982.366 kb on + strandat 982.376 kb on + strandat 982.387 kb on + strandat 982.453 kb on + strand, within CSW01_04725at 982.461 kb on - strand, within CSW01_04725at 982.461 kb on - strand, within CSW01_04725at 982.483 kb on + strand, within CSW01_04725at 982.493 kb on + strand, within CSW01_04725at 982.527 kb on - strand, within CSW01_04725at 982.544 kb on - strand, within CSW01_04725at 982.654 kb on - strand, within CSW01_04725at 982.656 kb on + strand, within CSW01_04725at 982.722 kb on + strand, within CSW01_04725at 982.723 kb on - strand, within CSW01_04725at 982.730 kb on - strand, within CSW01_04725at 982.738 kb on + strand, within CSW01_04725at 982.778 kb on + strand, within CSW01_04725at 982.778 kb on + strand, within CSW01_04725at 982.786 kb on - strand, within CSW01_04725at 982.786 kb on - strand, within CSW01_04725at 982.786 kb on - strand, within CSW01_04725at 982.810 kb on + strand, within CSW01_04725at 982.818 kb on - strand, within CSW01_04725at 982.846 kb on + strand, within CSW01_04725at 982.846 kb on + strand, within CSW01_04725at 982.854 kb on - strand, within CSW01_04725at 982.854 kb on - strand, within CSW01_04725at 982.898 kb on + strand, within CSW01_04725at 982.906 kb on + strand, within CSW01_04725at 982.981 kb on - strand, within CSW01_04725at 983.032 kb on + strand, within CSW01_04725at 983.032 kb on + strand, within CSW01_04725at 983.032 kb on + strand, within CSW01_04725at 983.086 kb on + strand, within CSW01_04725at 983.086 kb on + strand, within CSW01_04725at 983.086 kb on + strand, within CSW01_04725at 983.086 kb on + strand, within CSW01_04725at 983.094 kb on - strand, within CSW01_04725at 983.094 kb on - strand, within CSW01_04725at 983.094 kb on - strand, within CSW01_04725at 983.181 kb on - strand, within CSW01_04725at 983.181 kb on - strand, within CSW01_04725at 983.188 kb on + strand, within CSW01_04725at 983.212 kb on + strand, within CSW01_04725at 983.220 kb on - strand, within CSW01_04725at 983.220 kb on - strand, within CSW01_04725

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15B
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980,125 + CSW01_04710 0.64 +0.0
980,138 - CSW01_04710 0.65 +0.3
980,180 + CSW01_04710 0.68 +0.4
980,188 - CSW01_04710 0.69 +0.2
980,198 - CSW01_04710 0.70 +0.0
980,219 + CSW01_04710 0.71 -0.2
980,288 + CSW01_04710 0.77 -0.1
980,288 + CSW01_04710 0.77 +0.6
980,333 + CSW01_04710 0.80 -0.1
980,341 - CSW01_04710 0.81 -0.2
980,341 - CSW01_04710 0.81 -0.2
980,460 + +0.5
980,468 - -0.4
980,592 + +0.5
980,600 - +0.8
980,600 - +0.1
980,600 - -1.1
980,630 + CSW01_04715 0.10 +0.2
980,630 + CSW01_04715 0.10 -0.0
980,638 - CSW01_04715 0.12 +0.2
980,638 - CSW01_04715 0.12 -0.3
980,695 - CSW01_04715 0.22 +0.8
980,803 + CSW01_04715 0.42 -0.7
980,803 + CSW01_04715 0.42 -0.8
980,811 - CSW01_04715 0.43 +0.4
980,811 - CSW01_04715 0.43 -0.2
980,887 - CSW01_04715 0.57 -1.4
980,995 + CSW01_04715 0.76 +0.2
981,003 - CSW01_04715 0.78 +1.2
981,059 - CSW01_04715 0.88 +0.1
981,089 + +1.6
981,125 + -0.1
981,223 - +0.9
981,236 - +0.2
981,262 + CSW01_04720 0.12 -0.3
981,270 - CSW01_04720 0.13 +0.2
981,284 + CSW01_04720 0.14 +3.5
981,318 + CSW01_04720 0.17 -1.0
981,365 + CSW01_04720 0.21 +0.6
981,365 + CSW01_04720 0.21 -0.2
981,440 + CSW01_04720 0.28 +0.6
981,452 - CSW01_04720 0.29 -1.7
981,454 - CSW01_04720 0.29 -0.3
981,489 + CSW01_04720 0.32 -0.8
981,489 + CSW01_04720 0.32 +0.4
981,497 - CSW01_04720 0.33 -0.6
981,576 - CSW01_04720 0.39 +0.0
981,682 + CSW01_04720 0.49 +0.5
981,685 - CSW01_04720 0.49 +0.3
981,713 + CSW01_04720 0.51 -0.4
981,722 + CSW01_04720 0.52 -0.1
981,756 - CSW01_04720 0.55 +0.6
981,792 + CSW01_04720 0.58 +0.3
981,800 - CSW01_04720 0.59 +0.6
981,805 + CSW01_04720 0.59 +0.4
981,805 + CSW01_04720 0.59 -0.4
981,805 + CSW01_04720 0.59 +0.1
981,805 + CSW01_04720 0.59 +0.2
981,813 - CSW01_04720 0.60 +0.8
981,813 - CSW01_04720 0.60 -0.0
981,813 - CSW01_04720 0.60 -0.3
981,813 - CSW01_04720 0.60 +0.4
981,813 - CSW01_04720 0.60 +0.7
981,813 - CSW01_04720 0.60 +0.3
981,899 + CSW01_04720 0.68 +0.4
981,934 + CSW01_04720 0.71 -1.0
981,934 + CSW01_04720 0.71 +0.2
981,934 + CSW01_04720 0.71 +0.3
981,934 + CSW01_04720 0.71 -0.4
981,944 + CSW01_04720 0.71 +0.0
982,005 + CSW01_04720 0.77 +0.1
982,012 + CSW01_04720 0.77 -0.2
982,093 + CSW01_04720 0.84 +1.0
982,157 - -0.8
982,298 + +1.3
982,366 + +0.4
982,366 + +0.3
982,376 + +0.3
982,387 + +0.9
982,453 + CSW01_04725 0.13 -0.1
982,461 - CSW01_04725 0.14 -0.2
982,461 - CSW01_04725 0.14 +0.9
982,483 + CSW01_04725 0.15 +0.1
982,493 + CSW01_04725 0.16 +0.0
982,527 - CSW01_04725 0.18 +0.2
982,544 - CSW01_04725 0.20 +0.0
982,654 - CSW01_04725 0.27 -0.0
982,656 + CSW01_04725 0.28 -0.2
982,722 + CSW01_04725 0.32 +0.3
982,723 - CSW01_04725 0.32 +0.7
982,730 - CSW01_04725 0.33 +0.8
982,738 + CSW01_04725 0.33 +0.0
982,778 + CSW01_04725 0.36 -0.2
982,778 + CSW01_04725 0.36 +0.1
982,786 - CSW01_04725 0.37 +0.3
982,786 - CSW01_04725 0.37 -0.4
982,786 - CSW01_04725 0.37 -0.6
982,810 + CSW01_04725 0.38 -2.6
982,818 - CSW01_04725 0.39 -0.5
982,846 + CSW01_04725 0.41 -0.7
982,846 + CSW01_04725 0.41 +0.1
982,854 - CSW01_04725 0.42 +0.9
982,854 - CSW01_04725 0.42 +0.6
982,898 + CSW01_04725 0.45 +0.1
982,906 + CSW01_04725 0.45 -0.4
982,981 - CSW01_04725 0.51 +0.4
983,032 + CSW01_04725 0.54 +0.8
983,032 + CSW01_04725 0.54 -0.0
983,032 + CSW01_04725 0.54 +1.6
983,086 + CSW01_04725 0.58 +0.3
983,086 + CSW01_04725 0.58 +0.5
983,086 + CSW01_04725 0.58 -0.7
983,086 + CSW01_04725 0.58 +0.1
983,094 - CSW01_04725 0.59 -0.1
983,094 - CSW01_04725 0.59 +0.4
983,094 - CSW01_04725 0.59 +0.0
983,181 - CSW01_04725 0.65 -1.0
983,181 - CSW01_04725 0.65 +0.2
983,188 + CSW01_04725 0.65 -0.7
983,212 + CSW01_04725 0.67 -0.7
983,220 - CSW01_04725 0.68 +0.9
983,220 - CSW01_04725 0.68 -0.2

Or see this region's nucleotide sequence