Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04175

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04160 and CSW01_04165 are separated by 67 nucleotidesCSW01_04165 and CSW01_04170 overlap by 29 nucleotidesCSW01_04170 and CSW01_04175 are separated by 8 nucleotidesCSW01_04175 and CSW01_04180 are separated by 191 nucleotides CSW01_04160: CSW01_04160 - NAD(P)/FAD-dependent oxidoreductase, at 859,526 to 861,142 _04160 CSW01_04165: CSW01_04165 - MFS transporter, at 861,210 to 861,893 _04165 CSW01_04170: CSW01_04170 - hypothetical protein, at 861,865 to 862,017 _04170 CSW01_04175: CSW01_04175 - SWIM zinc finger domain-containing protein, at 862,026 to 863,795 _04175 CSW01_04180: CSW01_04180 - hypothetical protein, at 863,987 to 864,502 _04180 Position (kb) 862 863 864Strain fitness (log2 ratio) -2 -1 0 1 2at 861.049 kb on - strandat 861.049 kb on - strandat 861.057 kb on + strandat 861.121 kb on + strandat 861.177 kb on - strandat 861.177 kb on - strandat 861.262 kb on + strandat 861.327 kb on + strand, within CSW01_04165at 861.411 kb on + strand, within CSW01_04165at 861.454 kb on + strand, within CSW01_04165at 861.497 kb on - strand, within CSW01_04165at 861.511 kb on + strand, within CSW01_04165at 861.513 kb on + strand, within CSW01_04165at 861.516 kb on - strand, within CSW01_04165at 861.640 kb on + strand, within CSW01_04165at 861.761 kb on + strand, within CSW01_04165at 861.767 kb on + strand, within CSW01_04165at 861.792 kb on + strand, within CSW01_04165at 861.796 kb on + strand, within CSW01_04165at 861.858 kb on - strandat 861.860 kb on + strandat 861.868 kb on - strandat 861.948 kb on - strand, within CSW01_04170at 861.952 kb on - strand, within CSW01_04170at 861.973 kb on + strand, within CSW01_04170at 861.989 kb on + strand, within CSW01_04170at 861.997 kb on - strand, within CSW01_04170at 862.023 kb on + strandat 862.152 kb on - strandat 862.161 kb on - strandat 862.163 kb on + strandat 862.197 kb on - strandat 862.223 kb on + strand, within CSW01_04175at 862.244 kb on - strand, within CSW01_04175at 862.265 kb on - strand, within CSW01_04175at 862.279 kb on - strand, within CSW01_04175at 862.306 kb on + strand, within CSW01_04175at 862.321 kb on - strand, within CSW01_04175at 862.357 kb on - strand, within CSW01_04175at 862.376 kb on + strand, within CSW01_04175at 862.384 kb on - strand, within CSW01_04175at 862.384 kb on - strand, within CSW01_04175at 862.599 kb on - strand, within CSW01_04175at 862.630 kb on + strand, within CSW01_04175at 862.630 kb on + strand, within CSW01_04175at 862.630 kb on + strand, within CSW01_04175at 862.671 kb on + strand, within CSW01_04175at 862.714 kb on + strand, within CSW01_04175at 862.723 kb on - strand, within CSW01_04175at 862.728 kb on + strand, within CSW01_04175at 862.736 kb on - strand, within CSW01_04175at 862.736 kb on - strand, within CSW01_04175at 862.760 kb on + strand, within CSW01_04175at 862.760 kb on + strand, within CSW01_04175at 862.793 kb on + strand, within CSW01_04175at 862.880 kb on + strand, within CSW01_04175at 862.979 kb on - strand, within CSW01_04175at 862.991 kb on - strand, within CSW01_04175at 862.991 kb on - strand, within CSW01_04175at 863.026 kb on + strand, within CSW01_04175at 863.028 kb on + strand, within CSW01_04175at 863.039 kb on - strand, within CSW01_04175at 863.115 kb on + strand, within CSW01_04175at 863.120 kb on + strand, within CSW01_04175at 863.120 kb on + strand, within CSW01_04175at 863.120 kb on + strand, within CSW01_04175at 863.125 kb on + strand, within CSW01_04175at 863.125 kb on + strand, within CSW01_04175at 863.125 kb on + strand, within CSW01_04175at 863.128 kb on - strand, within CSW01_04175at 863.128 kb on - strand, within CSW01_04175at 863.128 kb on - strand, within CSW01_04175at 863.128 kb on - strand, within CSW01_04175at 863.128 kb on - strand, within CSW01_04175at 863.133 kb on - strand, within CSW01_04175at 863.133 kb on - strand, within CSW01_04175at 863.154 kb on + strand, within CSW01_04175at 863.209 kb on + strand, within CSW01_04175at 863.222 kb on + strand, within CSW01_04175at 863.227 kb on + strand, within CSW01_04175at 863.230 kb on - strand, within CSW01_04175at 863.230 kb on - strand, within CSW01_04175at 863.235 kb on - strand, within CSW01_04175at 863.311 kb on + strand, within CSW01_04175at 863.327 kb on + strand, within CSW01_04175at 863.376 kb on + strand, within CSW01_04175at 863.384 kb on - strand, within CSW01_04175at 863.396 kb on + strand, within CSW01_04175at 863.437 kb on + strand, within CSW01_04175at 863.541 kb on - strand, within CSW01_04175at 863.570 kb on - strand, within CSW01_04175at 863.570 kb on - strand, within CSW01_04175at 863.570 kb on - strand, within CSW01_04175at 863.579 kb on + strand, within CSW01_04175at 863.621 kb on + strandat 863.733 kb on + strandat 863.754 kb on + strandat 863.790 kb on + strandat 863.797 kb on - strandat 863.798 kb on - strandat 863.816 kb on - strandat 863.878 kb on - strandat 863.995 kb on + strandat 864.068 kb on - strand, within CSW01_04180at 864.090 kb on - strand, within CSW01_04180at 864.097 kb on + strand, within CSW01_04180at 864.097 kb on + strand, within CSW01_04180at 864.097 kb on + strand, within CSW01_04180at 864.108 kb on + strand, within CSW01_04180at 864.116 kb on - strand, within CSW01_04180at 864.116 kb on - strand, within CSW01_04180at 864.118 kb on + strand, within CSW01_04180at 864.118 kb on + strand, within CSW01_04180at 864.120 kb on + strand, within CSW01_04180at 864.126 kb on - strand, within CSW01_04180at 864.126 kb on - strand, within CSW01_04180at 864.126 kb on - strand, within CSW01_04180at 864.132 kb on + strand, within CSW01_04180at 864.163 kb on + strand, within CSW01_04180at 864.195 kb on + strand, within CSW01_04180at 864.203 kb on - strand, within CSW01_04180at 864.209 kb on + strand, within CSW01_04180at 864.215 kb on - strand, within CSW01_04180at 864.215 kb on - strand, within CSW01_04180at 864.277 kb on + strand, within CSW01_04180at 864.287 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.292 kb on + strand, within CSW01_04180at 864.295 kb on - strand, within CSW01_04180at 864.300 kb on - strand, within CSW01_04180at 864.300 kb on - strand, within CSW01_04180at 864.300 kb on - strand, within CSW01_04180at 864.300 kb on - strand, within CSW01_04180at 864.300 kb on - strand, within CSW01_04180at 864.300 kb on - strand, within CSW01_04180at 864.300 kb on - strand, within CSW01_04180at 864.326 kb on - strand, within CSW01_04180at 864.329 kb on + strand, within CSW01_04180at 864.336 kb on + strand, within CSW01_04180at 864.336 kb on + strand, within CSW01_04180at 864.337 kb on - strand, within CSW01_04180at 864.345 kb on - strand, within CSW01_04180at 864.356 kb on - strand, within CSW01_04180at 864.395 kb on + strand, within CSW01_04180at 864.506 kb on + strandat 864.536 kb on + strandat 864.544 kb on - strandat 864.544 kb on - strandat 864.549 kb on - strandat 864.556 kb on - strandat 864.629 kb on - strandat 864.641 kb on + strandat 864.663 kb on - strandat 864.671 kb on - strandat 864.712 kb on + strandat 864.751 kb on - strandat 864.751 kb on - strandat 864.789 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15B
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861,049 - -0.3
861,049 - -1.5
861,057 + -1.2
861,121 + +0.5
861,177 - -1.4
861,177 - +0.2
861,262 + +0.3
861,327 + CSW01_04165 0.17 -0.2
861,411 + CSW01_04165 0.29 +0.3
861,454 + CSW01_04165 0.36 -0.4
861,497 - CSW01_04165 0.42 +0.6
861,511 + CSW01_04165 0.44 -0.2
861,513 + CSW01_04165 0.44 -0.1
861,516 - CSW01_04165 0.45 -0.1
861,640 + CSW01_04165 0.63 -0.3
861,761 + CSW01_04165 0.81 -0.0
861,767 + CSW01_04165 0.81 +0.9
861,792 + CSW01_04165 0.85 +0.6
861,796 + CSW01_04165 0.86 -0.2
861,858 - -0.3
861,860 + +0.8
861,868 - -0.1
861,948 - CSW01_04170 0.54 -0.1
861,952 - CSW01_04170 0.57 +0.1
861,973 + CSW01_04170 0.71 -0.4
861,989 + CSW01_04170 0.81 -0.2
861,997 - CSW01_04170 0.86 -0.1
862,023 + +0.1
862,152 - -0.2
862,161 - +0.7
862,163 + -1.0
862,197 - -0.2
862,223 + CSW01_04175 0.11 -0.4
862,244 - CSW01_04175 0.12 -0.1
862,265 - CSW01_04175 0.14 +0.7
862,279 - CSW01_04175 0.14 -0.3
862,306 + CSW01_04175 0.16 -0.4
862,321 - CSW01_04175 0.17 -0.6
862,357 - CSW01_04175 0.19 +0.4
862,376 + CSW01_04175 0.20 +0.6
862,384 - CSW01_04175 0.20 +0.2
862,384 - CSW01_04175 0.20 -1.2
862,599 - CSW01_04175 0.32 +0.4
862,630 + CSW01_04175 0.34 -0.0
862,630 + CSW01_04175 0.34 +0.3
862,630 + CSW01_04175 0.34 +0.8
862,671 + CSW01_04175 0.36 +0.2
862,714 + CSW01_04175 0.39 +1.6
862,723 - CSW01_04175 0.39 +0.1
862,728 + CSW01_04175 0.40 +0.3
862,736 - CSW01_04175 0.40 -0.1
862,736 - CSW01_04175 0.40 +0.1
862,760 + CSW01_04175 0.41 -0.2
862,760 + CSW01_04175 0.41 +0.1
862,793 + CSW01_04175 0.43 +0.3
862,880 + CSW01_04175 0.48 +1.2
862,979 - CSW01_04175 0.54 -0.3
862,991 - CSW01_04175 0.55 +0.2
862,991 - CSW01_04175 0.55 +0.1
863,026 + CSW01_04175 0.56 -0.4
863,028 + CSW01_04175 0.57 -0.1
863,039 - CSW01_04175 0.57 +1.0
863,115 + CSW01_04175 0.62 -0.3
863,120 + CSW01_04175 0.62 +0.0
863,120 + CSW01_04175 0.62 +0.4
863,120 + CSW01_04175 0.62 -0.3
863,125 + CSW01_04175 0.62 +0.6
863,125 + CSW01_04175 0.62 +0.2
863,125 + CSW01_04175 0.62 -0.1
863,128 - CSW01_04175 0.62 -0.1
863,128 - CSW01_04175 0.62 +2.2
863,128 - CSW01_04175 0.62 -0.2
863,128 - CSW01_04175 0.62 +0.3
863,128 - CSW01_04175 0.62 +0.6
863,133 - CSW01_04175 0.63 +0.3
863,133 - CSW01_04175 0.63 +0.6
863,154 + CSW01_04175 0.64 +1.0
863,209 + CSW01_04175 0.67 -0.3
863,222 + CSW01_04175 0.68 +0.3
863,227 + CSW01_04175 0.68 -1.1
863,230 - CSW01_04175 0.68 +0.3
863,230 - CSW01_04175 0.68 -0.0
863,235 - CSW01_04175 0.68 +0.2
863,311 + CSW01_04175 0.73 -0.5
863,327 + CSW01_04175 0.74 -0.2
863,376 + CSW01_04175 0.76 -0.4
863,384 - CSW01_04175 0.77 +0.3
863,396 + CSW01_04175 0.77 -0.9
863,437 + CSW01_04175 0.80 +0.9
863,541 - CSW01_04175 0.86 +0.8
863,570 - CSW01_04175 0.87 +0.3
863,570 - CSW01_04175 0.87 +0.2
863,570 - CSW01_04175 0.87 -0.6
863,579 + CSW01_04175 0.88 +0.0
863,621 + -1.0
863,733 + +0.4
863,754 + +0.4
863,790 + +0.7
863,797 - +0.0
863,798 - +0.6
863,816 - -1.1
863,878 - -0.4
863,995 + +0.6
864,068 - CSW01_04180 0.16 -0.5
864,090 - CSW01_04180 0.20 +2.2
864,097 + CSW01_04180 0.21 -0.4
864,097 + CSW01_04180 0.21 -0.6
864,097 + CSW01_04180 0.21 -0.3
864,108 + CSW01_04180 0.23 -0.0
864,116 - CSW01_04180 0.25 -0.3
864,116 - CSW01_04180 0.25 -0.3
864,118 + CSW01_04180 0.25 -0.1
864,118 + CSW01_04180 0.25 -0.1
864,120 + CSW01_04180 0.26 -0.1
864,126 - CSW01_04180 0.27 +0.3
864,126 - CSW01_04180 0.27 -0.6
864,126 - CSW01_04180 0.27 +0.4
864,132 + CSW01_04180 0.28 -0.8
864,163 + CSW01_04180 0.34 +0.7
864,195 + CSW01_04180 0.40 +0.1
864,203 - CSW01_04180 0.42 +0.1
864,209 + CSW01_04180 0.43 -0.4
864,215 - CSW01_04180 0.44 +0.4
864,215 - CSW01_04180 0.44 -0.7
864,277 + CSW01_04180 0.56 +0.6
864,287 + CSW01_04180 0.58 +0.1
864,292 + CSW01_04180 0.59 +0.1
864,292 + CSW01_04180 0.59 +0.1
864,292 + CSW01_04180 0.59 +0.3
864,292 + CSW01_04180 0.59 +0.1
864,292 + CSW01_04180 0.59 -0.8
864,292 + CSW01_04180 0.59 -0.0
864,292 + CSW01_04180 0.59 -2.2
864,292 + CSW01_04180 0.59 -0.0
864,292 + CSW01_04180 0.59 -0.8
864,292 + CSW01_04180 0.59 +0.8
864,292 + CSW01_04180 0.59 -1.1
864,292 + CSW01_04180 0.59 -0.6
864,292 + CSW01_04180 0.59 +0.7
864,292 + CSW01_04180 0.59 -0.1
864,292 + CSW01_04180 0.59 -0.5
864,292 + CSW01_04180 0.59 -0.3
864,292 + CSW01_04180 0.59 -0.5
864,295 - CSW01_04180 0.60 -0.0
864,300 - CSW01_04180 0.61 -0.0
864,300 - CSW01_04180 0.61 -0.1
864,300 - CSW01_04180 0.61 -0.6
864,300 - CSW01_04180 0.61 -0.7
864,300 - CSW01_04180 0.61 -0.7
864,300 - CSW01_04180 0.61 -0.3
864,300 - CSW01_04180 0.61 -0.7
864,326 - CSW01_04180 0.66 -0.8
864,329 + CSW01_04180 0.66 -0.6
864,336 + CSW01_04180 0.68 -0.2
864,336 + CSW01_04180 0.68 +0.1
864,337 - CSW01_04180 0.68 +1.6
864,345 - CSW01_04180 0.69 -0.3
864,356 - CSW01_04180 0.72 -0.1
864,395 + CSW01_04180 0.79 -0.2
864,506 + +0.4
864,536 + -0.8
864,544 - -0.5
864,544 - +0.0
864,549 - +1.7
864,556 - -0.1
864,629 - +1.6
864,641 + +0.2
864,663 - -0.1
864,671 - +0.5
864,712 + +0.6
864,751 - +0.2
864,751 - +0.7
864,789 + -0.7

Or see this region's nucleotide sequence