Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04105

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04100 and CSW01_04105 are separated by 18 nucleotidesCSW01_04105 and CSW01_04110 overlap by 53 nucleotides CSW01_04100: CSW01_04100 - oxaloacetate decarboxylase subunit alpha, at 848,109 to 849,908 _04100 CSW01_04105: CSW01_04105 - sodium pump decarboxylase, at 849,927 to 850,346 _04105 CSW01_04110: CSW01_04110 - citrate:sodium symporter, at 850,294 to 851,640 _04110 Position (kb) 849 850 851Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 849.053 kb on + strand, within CSW01_04100at 849.120 kb on + strand, within CSW01_04100at 849.132 kb on + strand, within CSW01_04100at 849.132 kb on + strand, within CSW01_04100at 849.132 kb on + strand, within CSW01_04100at 849.153 kb on + strand, within CSW01_04100at 849.162 kb on - strand, within CSW01_04100at 849.190 kb on + strand, within CSW01_04100at 849.233 kb on - strand, within CSW01_04100at 849.233 kb on - strand, within CSW01_04100at 849.233 kb on - strand, within CSW01_04100at 849.233 kb on - strand, within CSW01_04100at 849.244 kb on + strand, within CSW01_04100at 849.244 kb on + strand, within CSW01_04100at 849.244 kb on + strand, within CSW01_04100at 849.244 kb on + strand, within CSW01_04100at 849.252 kb on - strand, within CSW01_04100at 849.296 kb on - strand, within CSW01_04100at 849.296 kb on - strand, within CSW01_04100at 849.388 kb on - strand, within CSW01_04100at 849.402 kb on - strand, within CSW01_04100at 849.460 kb on + strand, within CSW01_04100at 849.460 kb on + strand, within CSW01_04100at 849.460 kb on + strand, within CSW01_04100at 849.468 kb on - strand, within CSW01_04100at 849.646 kb on - strand, within CSW01_04100at 849.670 kb on + strand, within CSW01_04100at 849.690 kb on - strand, within CSW01_04100at 849.748 kb on - strandat 849.820 kb on - strandat 849.946 kb on + strandat 849.954 kb on - strandat 849.954 kb on - strandat 849.967 kb on + strandat 849.967 kb on + strandat 849.975 kb on - strand, within CSW01_04105at 850.009 kb on - strand, within CSW01_04105at 850.012 kb on + strand, within CSW01_04105at 850.012 kb on + strand, within CSW01_04105at 850.012 kb on + strand, within CSW01_04105at 850.012 kb on + strand, within CSW01_04105at 850.020 kb on - strand, within CSW01_04105at 850.020 kb on - strand, within CSW01_04105at 850.020 kb on - strand, within CSW01_04105at 850.163 kb on + strand, within CSW01_04105at 850.233 kb on - strand, within CSW01_04105at 850.284 kb on + strand, within CSW01_04105at 850.284 kb on + strand, within CSW01_04105at 850.284 kb on + strand, within CSW01_04105at 850.284 kb on + strand, within CSW01_04105at 850.327 kb on + strandat 850.330 kb on - strandat 850.332 kb on + strandat 850.353 kb on - strandat 850.407 kb on + strandat 850.407 kb on + strandat 850.415 kb on - strandat 850.415 kb on - strandat 850.444 kb on - strand, within CSW01_04110at 850.446 kb on + strand, within CSW01_04110at 850.449 kb on - strand, within CSW01_04110at 850.449 kb on - strand, within CSW01_04110at 850.449 kb on - strand, within CSW01_04110at 850.464 kb on - strand, within CSW01_04110at 850.472 kb on + strand, within CSW01_04110at 850.472 kb on + strand, within CSW01_04110at 850.472 kb on + strand, within CSW01_04110at 850.480 kb on - strand, within CSW01_04110at 850.480 kb on - strand, within CSW01_04110at 850.480 kb on - strand, within CSW01_04110at 850.480 kb on - strand, within CSW01_04110at 850.482 kb on - strand, within CSW01_04110at 850.495 kb on + strand, within CSW01_04110at 850.495 kb on + strand, within CSW01_04110at 850.495 kb on + strand, within CSW01_04110at 850.496 kb on + strand, within CSW01_04110at 850.503 kb on - strand, within CSW01_04110at 850.503 kb on - strand, within CSW01_04110at 850.601 kb on - strand, within CSW01_04110at 850.684 kb on + strand, within CSW01_04110at 850.684 kb on + strand, within CSW01_04110at 850.684 kb on + strand, within CSW01_04110at 850.685 kb on - strand, within CSW01_04110at 850.687 kb on - strand, within CSW01_04110at 850.697 kb on + strand, within CSW01_04110at 850.705 kb on - strand, within CSW01_04110at 850.714 kb on + strand, within CSW01_04110at 850.728 kb on + strand, within CSW01_04110at 850.752 kb on + strand, within CSW01_04110at 850.795 kb on + strand, within CSW01_04110at 850.795 kb on + strand, within CSW01_04110at 850.798 kb on + strand, within CSW01_04110at 850.803 kb on - strand, within CSW01_04110at 850.815 kb on + strand, within CSW01_04110at 850.823 kb on - strand, within CSW01_04110at 850.823 kb on - strand, within CSW01_04110at 850.881 kb on + strand, within CSW01_04110at 850.889 kb on + strand, within CSW01_04110at 850.889 kb on - strand, within CSW01_04110at 850.891 kb on + strand, within CSW01_04110at 850.942 kb on + strand, within CSW01_04110at 850.942 kb on + strand, within CSW01_04110at 850.975 kb on + strand, within CSW01_04110at 850.984 kb on + strand, within CSW01_04110at 851.011 kb on + strand, within CSW01_04110at 851.074 kb on + strand, within CSW01_04110at 851.164 kb on - strand, within CSW01_04110at 851.221 kb on + strand, within CSW01_04110at 851.221 kb on + strand, within CSW01_04110at 851.229 kb on + strand, within CSW01_04110at 851.229 kb on - strand, within CSW01_04110at 851.237 kb on - strand, within CSW01_04110at 851.237 kb on - strand, within CSW01_04110at 851.258 kb on + strand, within CSW01_04110at 851.260 kb on + strand, within CSW01_04110at 851.268 kb on - strand, within CSW01_04110at 851.270 kb on + strand, within CSW01_04110at 851.270 kb on + strand, within CSW01_04110at 851.270 kb on + strand, within CSW01_04110at 851.278 kb on - strand, within CSW01_04110at 851.334 kb on + strand, within CSW01_04110at 851.334 kb on + strand, within CSW01_04110at 851.334 kb on + strand, within CSW01_04110at 851.342 kb on - strand, within CSW01_04110at 851.342 kb on - strand, within CSW01_04110at 851.342 kb on - strand, within CSW01_04110at 851.344 kb on + strand, within CSW01_04110at 851.346 kb on - strand, within CSW01_04110

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15B
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849,053 + CSW01_04100 0.52 +0.6
849,120 + CSW01_04100 0.56 +0.4
849,132 + CSW01_04100 0.57 +0.2
849,132 + CSW01_04100 0.57 +0.2
849,132 + CSW01_04100 0.57 +0.1
849,153 + CSW01_04100 0.58 +1.4
849,162 - CSW01_04100 0.58 -0.6
849,190 + CSW01_04100 0.60 -0.5
849,233 - CSW01_04100 0.62 -0.7
849,233 - CSW01_04100 0.62 +0.7
849,233 - CSW01_04100 0.62 +0.3
849,233 - CSW01_04100 0.62 -0.3
849,244 + CSW01_04100 0.63 -0.6
849,244 + CSW01_04100 0.63 +0.7
849,244 + CSW01_04100 0.63 +0.4
849,244 + CSW01_04100 0.63 -0.8
849,252 - CSW01_04100 0.64 -0.0
849,296 - CSW01_04100 0.66 +0.1
849,296 - CSW01_04100 0.66 +0.1
849,388 - CSW01_04100 0.71 +1.6
849,402 - CSW01_04100 0.72 -0.0
849,460 + CSW01_04100 0.75 -0.5
849,460 + CSW01_04100 0.75 -0.2
849,460 + CSW01_04100 0.75 +0.4
849,468 - CSW01_04100 0.76 -1.5
849,646 - CSW01_04100 0.85 +0.3
849,670 + CSW01_04100 0.87 -0.1
849,690 - CSW01_04100 0.88 +0.2
849,748 - -0.5
849,820 - +0.1
849,946 + -0.1
849,954 - -2.0
849,954 - -0.4
849,967 + +0.8
849,967 + -0.4
849,975 - CSW01_04105 0.11 -1.1
850,009 - CSW01_04105 0.20 -2.0
850,012 + CSW01_04105 0.20 +0.2
850,012 + CSW01_04105 0.20 -0.3
850,012 + CSW01_04105 0.20 +0.5
850,012 + CSW01_04105 0.20 +0.1
850,020 - CSW01_04105 0.22 -1.8
850,020 - CSW01_04105 0.22 -0.7
850,020 - CSW01_04105 0.22 -0.7
850,163 + CSW01_04105 0.56 -0.6
850,233 - CSW01_04105 0.73 -1.3
850,284 + CSW01_04105 0.85 +0.8
850,284 + CSW01_04105 0.85 +0.0
850,284 + CSW01_04105 0.85 -0.1
850,284 + CSW01_04105 0.85 +0.2
850,327 + +0.1
850,330 - -0.4
850,332 + +0.4
850,353 - +0.4
850,407 + -1.5
850,407 + +0.1
850,415 - -0.1
850,415 - -0.6
850,444 - CSW01_04110 0.11 +0.3
850,446 + CSW01_04110 0.11 +0.4
850,449 - CSW01_04110 0.12 -0.7
850,449 - CSW01_04110 0.12 +0.6
850,449 - CSW01_04110 0.12 -0.5
850,464 - CSW01_04110 0.13 +0.1
850,472 + CSW01_04110 0.13 -1.1
850,472 + CSW01_04110 0.13 +0.3
850,472 + CSW01_04110 0.13 +0.1
850,480 - CSW01_04110 0.14 +0.4
850,480 - CSW01_04110 0.14 -0.6
850,480 - CSW01_04110 0.14 -0.1
850,480 - CSW01_04110 0.14 +0.0
850,482 - CSW01_04110 0.14 +0.8
850,495 + CSW01_04110 0.15 +1.1
850,495 + CSW01_04110 0.15 -1.9
850,495 + CSW01_04110 0.15 -0.9
850,496 + CSW01_04110 0.15 -0.2
850,503 - CSW01_04110 0.16 -0.2
850,503 - CSW01_04110 0.16 +2.6
850,601 - CSW01_04110 0.23 +1.3
850,684 + CSW01_04110 0.29 -0.4
850,684 + CSW01_04110 0.29 +0.0
850,684 + CSW01_04110 0.29 +0.6
850,685 - CSW01_04110 0.29 -0.7
850,687 - CSW01_04110 0.29 +0.0
850,697 + CSW01_04110 0.30 +0.3
850,705 - CSW01_04110 0.31 -0.1
850,714 + CSW01_04110 0.31 +0.2
850,728 + CSW01_04110 0.32 +0.6
850,752 + CSW01_04110 0.34 -0.8
850,795 + CSW01_04110 0.37 +0.7
850,795 + CSW01_04110 0.37 -1.2
850,798 + CSW01_04110 0.37 -0.5
850,803 - CSW01_04110 0.38 +0.3
850,815 + CSW01_04110 0.39 +0.3
850,823 - CSW01_04110 0.39 -3.1
850,823 - CSW01_04110 0.39 +0.0
850,881 + CSW01_04110 0.44 +0.3
850,889 + CSW01_04110 0.44 -0.5
850,889 - CSW01_04110 0.44 +0.1
850,891 + CSW01_04110 0.44 -0.1
850,942 + CSW01_04110 0.48 +0.1
850,942 + CSW01_04110 0.48 +0.1
850,975 + CSW01_04110 0.51 +0.0
850,984 + CSW01_04110 0.51 -0.4
851,011 + CSW01_04110 0.53 -0.0
851,074 + CSW01_04110 0.58 +0.3
851,164 - CSW01_04110 0.65 -0.0
851,221 + CSW01_04110 0.69 +0.5
851,221 + CSW01_04110 0.69 +1.0
851,229 + CSW01_04110 0.69 +0.2
851,229 - CSW01_04110 0.69 +0.4
851,237 - CSW01_04110 0.70 +0.2
851,237 - CSW01_04110 0.70 -0.6
851,258 + CSW01_04110 0.72 +0.3
851,260 + CSW01_04110 0.72 -0.3
851,268 - CSW01_04110 0.72 -0.6
851,270 + CSW01_04110 0.72 -0.2
851,270 + CSW01_04110 0.72 -0.1
851,270 + CSW01_04110 0.72 +0.4
851,278 - CSW01_04110 0.73 +0.9
851,334 + CSW01_04110 0.77 +0.6
851,334 + CSW01_04110 0.77 +0.3
851,334 + CSW01_04110 0.77 +0.5
851,342 - CSW01_04110 0.78 -0.3
851,342 - CSW01_04110 0.78 +0.0
851,342 - CSW01_04110 0.78 -0.6
851,344 + CSW01_04110 0.78 -0.6
851,346 - CSW01_04110 0.78 -0.2

Or see this region's nucleotide sequence