Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03630

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03620 and CSW01_03625 are separated by 26 nucleotidesCSW01_03625 and CSW01_03630 are separated by 9 nucleotidesCSW01_03630 and CSW01_03635 are separated by 241 nucleotides CSW01_03620: CSW01_03620 - beta-hexosaminidase, at 738,618 to 739,610 _03620 CSW01_03625: CSW01_03625 - DNA-binding response regulator, at 739,637 to 740,350 _03625 CSW01_03630: CSW01_03630 - sensor histidine kinase, at 740,360 to 742,036 _03630 CSW01_03635: CSW01_03635 - 3-deoxy-7-phosphoheptulonate synthase, at 742,278 to 743,351 _03635 Position (kb) 740 741 742 743Strain fitness (log2 ratio) -1 0 1 2at 739.401 kb on + strand, within CSW01_03620at 739.474 kb on - strand, within CSW01_03620at 739.498 kb on + strand, within CSW01_03620at 739.554 kb on - strandat 739.636 kb on - strandat 739.674 kb on - strandat 739.693 kb on + strandat 739.694 kb on + strandat 739.694 kb on + strandat 739.702 kb on - strandat 739.770 kb on + strand, within CSW01_03625at 739.918 kb on + strand, within CSW01_03625at 739.928 kb on + strand, within CSW01_03625at 739.936 kb on - strand, within CSW01_03625at 739.936 kb on - strand, within CSW01_03625at 739.936 kb on - strand, within CSW01_03625at 739.936 kb on - strand, within CSW01_03625at 739.936 kb on - strand, within CSW01_03625at 739.936 kb on - strand, within CSW01_03625at 739.946 kb on + strand, within CSW01_03625at 739.951 kb on + strand, within CSW01_03625at 739.951 kb on + strand, within CSW01_03625at 739.951 kb on + strand, within CSW01_03625at 739.951 kb on + strand, within CSW01_03625at 739.951 kb on + strand, within CSW01_03625at 739.956 kb on + strand, within CSW01_03625at 739.956 kb on + strand, within CSW01_03625at 739.959 kb on - strand, within CSW01_03625at 739.959 kb on - strand, within CSW01_03625at 739.962 kb on + strand, within CSW01_03625at 739.972 kb on + strand, within CSW01_03625at 739.975 kb on - strand, within CSW01_03625at 740.046 kb on + strand, within CSW01_03625at 740.046 kb on + strand, within CSW01_03625at 740.054 kb on - strand, within CSW01_03625at 740.074 kb on + strand, within CSW01_03625at 740.111 kb on + strand, within CSW01_03625at 740.122 kb on + strand, within CSW01_03625at 740.129 kb on - strand, within CSW01_03625at 740.130 kb on - strand, within CSW01_03625at 740.135 kb on - strand, within CSW01_03625at 740.216 kb on - strand, within CSW01_03625at 740.216 kb on - strand, within CSW01_03625at 740.312 kb on + strandat 740.320 kb on - strandat 740.341 kb on - strandat 740.348 kb on + strandat 740.351 kb on + strandat 740.415 kb on - strandat 740.418 kb on + strandat 740.418 kb on + strandat 740.426 kb on - strandat 740.431 kb on + strandat 740.571 kb on + strand, within CSW01_03630at 740.602 kb on + strand, within CSW01_03630at 740.602 kb on + strand, within CSW01_03630at 740.602 kb on + strand, within CSW01_03630at 740.602 kb on + strand, within CSW01_03630at 740.602 kb on + strand, within CSW01_03630at 740.602 kb on + strand, within CSW01_03630at 740.610 kb on - strand, within CSW01_03630at 740.610 kb on - strand, within CSW01_03630at 740.610 kb on - strand, within CSW01_03630at 740.610 kb on - strand, within CSW01_03630at 740.610 kb on - strand, within CSW01_03630at 740.610 kb on - strand, within CSW01_03630at 740.610 kb on - strand, within CSW01_03630at 740.610 kb on - strand, within CSW01_03630at 740.610 kb on - strand, within CSW01_03630at 740.677 kb on + strand, within CSW01_03630at 740.756 kb on + strand, within CSW01_03630at 740.761 kb on + strand, within CSW01_03630at 740.794 kb on + strand, within CSW01_03630at 740.866 kb on + strand, within CSW01_03630at 740.885 kb on - strand, within CSW01_03630at 740.928 kb on + strand, within CSW01_03630at 741.011 kb on + strand, within CSW01_03630at 741.014 kb on - strand, within CSW01_03630at 741.019 kb on - strand, within CSW01_03630at 741.065 kb on + strand, within CSW01_03630at 741.118 kb on - strand, within CSW01_03630at 741.142 kb on - strand, within CSW01_03630at 741.177 kb on + strand, within CSW01_03630at 741.216 kb on - strand, within CSW01_03630at 741.241 kb on + strand, within CSW01_03630at 741.265 kb on + strand, within CSW01_03630at 741.268 kb on - strand, within CSW01_03630at 741.304 kb on - strand, within CSW01_03630at 741.322 kb on + strand, within CSW01_03630at 741.380 kb on + strand, within CSW01_03630at 741.437 kb on - strand, within CSW01_03630at 741.479 kb on - strand, within CSW01_03630at 741.479 kb on - strand, within CSW01_03630at 741.525 kb on + strand, within CSW01_03630at 741.537 kb on + strand, within CSW01_03630at 741.545 kb on - strand, within CSW01_03630at 741.550 kb on - strand, within CSW01_03630at 741.617 kb on + strand, within CSW01_03630at 741.661 kb on + strand, within CSW01_03630at 741.661 kb on + strand, within CSW01_03630at 741.669 kb on - strand, within CSW01_03630at 741.669 kb on - strand, within CSW01_03630at 741.692 kb on + strand, within CSW01_03630at 741.719 kb on + strand, within CSW01_03630at 741.737 kb on + strand, within CSW01_03630at 741.745 kb on - strand, within CSW01_03630at 741.752 kb on + strand, within CSW01_03630at 741.752 kb on + strand, within CSW01_03630at 741.752 kb on + strand, within CSW01_03630at 741.752 kb on - strand, within CSW01_03630at 741.760 kb on - strand, within CSW01_03630at 741.809 kb on + strand, within CSW01_03630at 741.817 kb on - strand, within CSW01_03630at 741.817 kb on - strand, within CSW01_03630at 741.862 kb on + strand, within CSW01_03630at 741.862 kb on + strand, within CSW01_03630at 741.885 kb on - strandat 741.890 kb on - strandat 741.951 kb on + strandat 741.959 kb on - strandat 741.976 kb on + strandat 741.984 kb on - strandat 741.991 kb on - strandat 741.994 kb on + strandat 742.040 kb on - strandat 742.040 kb on - strandat 742.374 kb on - strandat 742.374 kb on - strandat 742.448 kb on + strand, within CSW01_03635at 742.485 kb on + strand, within CSW01_03635at 742.519 kb on + strand, within CSW01_03635at 742.546 kb on - strand, within CSW01_03635at 742.546 kb on - strand, within CSW01_03635at 742.848 kb on + strand, within CSW01_03635at 742.848 kb on + strand, within CSW01_03635at 742.926 kb on + strand, within CSW01_03635at 742.926 kb on + strand, within CSW01_03635at 742.934 kb on - strand, within CSW01_03635at 742.934 kb on - strand, within CSW01_03635at 742.934 kb on - strand, within CSW01_03635at 742.940 kb on + strand, within CSW01_03635at 742.947 kb on + strand, within CSW01_03635at 742.948 kb on - strand, within CSW01_03635at 742.948 kb on - strand, within CSW01_03635at 742.948 kb on - strand, within CSW01_03635at 742.955 kb on - strand, within CSW01_03635at 742.955 kb on - strand, within CSW01_03635at 743.034 kb on - strand, within CSW01_03635

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15B
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739,401 + CSW01_03620 0.79 +1.1
739,474 - CSW01_03620 0.86 -0.2
739,498 + CSW01_03620 0.89 -0.6
739,554 - -0.7
739,636 - -0.6
739,674 - +0.4
739,693 + +0.7
739,694 + -0.1
739,694 + +0.4
739,702 - -0.0
739,770 + CSW01_03625 0.19 +0.3
739,918 + CSW01_03625 0.39 +0.8
739,928 + CSW01_03625 0.41 -0.3
739,936 - CSW01_03625 0.42 +0.8
739,936 - CSW01_03625 0.42 -0.1
739,936 - CSW01_03625 0.42 +0.6
739,936 - CSW01_03625 0.42 +0.0
739,936 - CSW01_03625 0.42 -0.6
739,936 - CSW01_03625 0.42 +0.4
739,946 + CSW01_03625 0.43 +0.8
739,951 + CSW01_03625 0.44 +2.5
739,951 + CSW01_03625 0.44 -0.3
739,951 + CSW01_03625 0.44 +0.5
739,951 + CSW01_03625 0.44 -0.5
739,951 + CSW01_03625 0.44 +0.1
739,956 + CSW01_03625 0.45 -0.5
739,956 + CSW01_03625 0.45 +0.2
739,959 - CSW01_03625 0.45 +0.3
739,959 - CSW01_03625 0.45 -0.5
739,962 + CSW01_03625 0.46 +0.2
739,972 + CSW01_03625 0.47 -1.0
739,975 - CSW01_03625 0.47 -0.2
740,046 + CSW01_03625 0.57 -0.1
740,046 + CSW01_03625 0.57 +0.2
740,054 - CSW01_03625 0.58 +0.4
740,074 + CSW01_03625 0.61 +0.4
740,111 + CSW01_03625 0.66 +0.8
740,122 + CSW01_03625 0.68 -0.3
740,129 - CSW01_03625 0.69 -1.2
740,130 - CSW01_03625 0.69 +0.8
740,135 - CSW01_03625 0.70 -0.9
740,216 - CSW01_03625 0.81 -0.1
740,216 - CSW01_03625 0.81 +1.7
740,312 + +0.1
740,320 - +0.8
740,341 - -0.3
740,348 + +2.0
740,351 + +0.7
740,415 - -0.7
740,418 + +0.8
740,418 + +0.9
740,426 - +1.1
740,431 + +0.5
740,571 + CSW01_03630 0.13 +1.6
740,602 + CSW01_03630 0.14 +0.6
740,602 + CSW01_03630 0.14 -0.2
740,602 + CSW01_03630 0.14 +0.5
740,602 + CSW01_03630 0.14 +0.3
740,602 + CSW01_03630 0.14 -0.4
740,602 + CSW01_03630 0.14 -0.0
740,610 - CSW01_03630 0.15 +0.1
740,610 - CSW01_03630 0.15 -0.2
740,610 - CSW01_03630 0.15 +1.0
740,610 - CSW01_03630 0.15 +0.1
740,610 - CSW01_03630 0.15 +1.1
740,610 - CSW01_03630 0.15 +1.1
740,610 - CSW01_03630 0.15 +2.0
740,610 - CSW01_03630 0.15 +0.6
740,610 - CSW01_03630 0.15 +0.1
740,677 + CSW01_03630 0.19 +1.1
740,756 + CSW01_03630 0.24 +1.1
740,761 + CSW01_03630 0.24 +0.9
740,794 + CSW01_03630 0.26 +0.7
740,866 + CSW01_03630 0.30 -0.2
740,885 - CSW01_03630 0.31 +0.1
740,928 + CSW01_03630 0.34 -0.7
741,011 + CSW01_03630 0.39 -0.2
741,014 - CSW01_03630 0.39 -0.9
741,019 - CSW01_03630 0.39 -0.1
741,065 + CSW01_03630 0.42 -0.9
741,118 - CSW01_03630 0.45 +0.4
741,142 - CSW01_03630 0.47 +0.6
741,177 + CSW01_03630 0.49 +0.4
741,216 - CSW01_03630 0.51 +0.8
741,241 + CSW01_03630 0.53 +0.3
741,265 + CSW01_03630 0.54 +0.2
741,268 - CSW01_03630 0.54 +0.1
741,304 - CSW01_03630 0.56 -0.8
741,322 + CSW01_03630 0.57 +0.0
741,380 + CSW01_03630 0.61 +0.4
741,437 - CSW01_03630 0.64 +0.5
741,479 - CSW01_03630 0.67 +0.7
741,479 - CSW01_03630 0.67 +0.1
741,525 + CSW01_03630 0.69 -0.3
741,537 + CSW01_03630 0.70 +0.0
741,545 - CSW01_03630 0.71 +0.5
741,550 - CSW01_03630 0.71 +0.5
741,617 + CSW01_03630 0.75 +1.5
741,661 + CSW01_03630 0.78 +0.2
741,661 + CSW01_03630 0.78 +0.7
741,669 - CSW01_03630 0.78 -0.2
741,669 - CSW01_03630 0.78 +0.4
741,692 + CSW01_03630 0.79 -0.8
741,719 + CSW01_03630 0.81 +0.4
741,737 + CSW01_03630 0.82 +0.3
741,745 - CSW01_03630 0.83 +0.6
741,752 + CSW01_03630 0.83 +0.2
741,752 + CSW01_03630 0.83 +1.9
741,752 + CSW01_03630 0.83 +0.0
741,752 - CSW01_03630 0.83 -0.4
741,760 - CSW01_03630 0.83 +0.6
741,809 + CSW01_03630 0.86 +1.9
741,817 - CSW01_03630 0.87 +0.5
741,817 - CSW01_03630 0.87 -0.4
741,862 + CSW01_03630 0.90 +0.2
741,862 + CSW01_03630 0.90 +0.1
741,885 - +2.2
741,890 - +0.4
741,951 + +0.5
741,959 - +0.1
741,976 + -0.5
741,984 - -0.1
741,991 - +0.1
741,994 + +0.9
742,040 - -0.5
742,040 - +0.1
742,374 - +0.1
742,374 - +0.1
742,448 + CSW01_03635 0.16 -1.2
742,485 + CSW01_03635 0.19 -0.5
742,519 + CSW01_03635 0.22 +0.7
742,546 - CSW01_03635 0.25 +0.6
742,546 - CSW01_03635 0.25 +1.4
742,848 + CSW01_03635 0.53 +0.4
742,848 + CSW01_03635 0.53 +1.2
742,926 + CSW01_03635 0.60 +0.4
742,926 + CSW01_03635 0.60 +0.9
742,934 - CSW01_03635 0.61 +0.8
742,934 - CSW01_03635 0.61 -0.9
742,934 - CSW01_03635 0.61 +0.7
742,940 + CSW01_03635 0.62 +0.4
742,947 + CSW01_03635 0.62 +0.2
742,948 - CSW01_03635 0.62 +0.3
742,948 - CSW01_03635 0.62 -0.4
742,948 - CSW01_03635 0.62 +0.3
742,955 - CSW01_03635 0.63 +0.0
742,955 - CSW01_03635 0.63 +0.5
743,034 - CSW01_03635 0.70 -0.7

Or see this region's nucleotide sequence