Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03605 and CSW01_03610 are separated by 23 nucleotides CSW01_03610 and CSW01_03615 are separated by 17 nucleotides CSW01_03615 and CSW01_03620 are separated by 105 nucleotides
CSW01_03605: CSW01_03605 - sodium:proton antiporter, at 734,636 to 736,435
_03605
CSW01_03610: CSW01_03610 - N-acetylmuramic acid 6-phosphate etherase, at 736,459 to 737,382
_03610
CSW01_03615: CSW01_03615 - anhydro-N-acetylmuramic acid kinase, at 737,400 to 738,512
_03615
CSW01_03620: CSW01_03620 - beta-hexosaminidase, at 738,618 to 739,610
_03620
Position (kb) 737
738
739 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 736.448 kb on + strand at 736.481 kb on - strand at 736.496 kb on - strand at 736.535 kb on - strand at 736.560 kb on - strand, within CSW01_03610 at 736.574 kb on - strand, within CSW01_03610 at 736.713 kb on - strand, within CSW01_03610 at 736.713 kb on - strand, within CSW01_03610 at 736.756 kb on + strand, within CSW01_03610 at 736.764 kb on - strand, within CSW01_03610 at 736.764 kb on - strand, within CSW01_03610 at 736.764 kb on - strand, within CSW01_03610 at 736.880 kb on - strand, within CSW01_03610 at 736.880 kb on - strand, within CSW01_03610 at 736.921 kb on + strand, within CSW01_03610 at 736.921 kb on + strand, within CSW01_03610 at 736.921 kb on + strand, within CSW01_03610 at 736.929 kb on - strand, within CSW01_03610 at 736.929 kb on - strand, within CSW01_03610 at 736.929 kb on - strand, within CSW01_03610 at 736.944 kb on + strand, within CSW01_03610 at 736.970 kb on - strand, within CSW01_03610 at 736.989 kb on + strand, within CSW01_03610 at 737.015 kb on - strand, within CSW01_03610 at 737.094 kb on + strand, within CSW01_03610 at 737.094 kb on + strand, within CSW01_03610 at 737.102 kb on - strand, within CSW01_03610 at 737.102 kb on - strand, within CSW01_03610 at 737.120 kb on - strand, within CSW01_03610 at 737.131 kb on + strand, within CSW01_03610 at 737.154 kb on + strand, within CSW01_03610 at 737.167 kb on - strand, within CSW01_03610 at 737.250 kb on - strand, within CSW01_03610 at 737.299 kb on + strand at 737.326 kb on + strand at 737.523 kb on - strand, within CSW01_03615 at 737.549 kb on - strand, within CSW01_03615 at 737.615 kb on - strand, within CSW01_03615 at 737.642 kb on + strand, within CSW01_03615 at 737.650 kb on - strand, within CSW01_03615 at 737.709 kb on + strand, within CSW01_03615 at 737.709 kb on + strand, within CSW01_03615 at 737.709 kb on + strand, within CSW01_03615 at 737.717 kb on - strand, within CSW01_03615 at 737.833 kb on + strand, within CSW01_03615 at 737.859 kb on + strand, within CSW01_03615 at 737.867 kb on - strand, within CSW01_03615 at 737.867 kb on - strand, within CSW01_03615 at 737.937 kb on + strand, within CSW01_03615 at 737.968 kb on + strand, within CSW01_03615 at 737.970 kb on - strand, within CSW01_03615 at 738.066 kb on + strand, within CSW01_03615 at 738.074 kb on - strand, within CSW01_03615 at 738.078 kb on + strand, within CSW01_03615 at 738.078 kb on + strand, within CSW01_03615 at 738.078 kb on + strand, within CSW01_03615 at 738.145 kb on + strand, within CSW01_03615 at 738.183 kb on - strand, within CSW01_03615 at 738.199 kb on - strand, within CSW01_03615 at 738.215 kb on + strand, within CSW01_03615 at 738.237 kb on + strand, within CSW01_03615 at 738.245 kb on - strand, within CSW01_03615 at 738.264 kb on - strand, within CSW01_03615 at 738.281 kb on + strand, within CSW01_03615 at 738.289 kb on - strand, within CSW01_03615 at 738.314 kb on + strand, within CSW01_03615 at 738.394 kb on + strand, within CSW01_03615 at 738.394 kb on + strand, within CSW01_03615 at 738.402 kb on - strand at 738.424 kb on - strand at 738.489 kb on + strand at 738.497 kb on - strand at 738.535 kb on - strand at 738.631 kb on + strand at 738.639 kb on - strand at 738.639 kb on - strand at 738.685 kb on + strand at 738.685 kb on + strand at 738.690 kb on + strand at 738.693 kb on - strand at 738.727 kb on + strand, within CSW01_03620 at 738.856 kb on - strand, within CSW01_03620 at 738.863 kb on + strand, within CSW01_03620 at 738.863 kb on + strand, within CSW01_03620 at 738.863 kb on + strand, within CSW01_03620 at 738.866 kb on - strand, within CSW01_03620 at 738.870 kb on - strand, within CSW01_03620 at 738.871 kb on - strand, within CSW01_03620 at 738.871 kb on - strand, within CSW01_03620 at 738.876 kb on + strand, within CSW01_03620 at 738.886 kb on + strand, within CSW01_03620 at 738.908 kb on - strand, within CSW01_03620 at 738.908 kb on - strand, within CSW01_03620 at 738.966 kb on + strand, within CSW01_03620 at 738.978 kb on + strand, within CSW01_03620 at 739.046 kb on - strand, within CSW01_03620 at 739.091 kb on + strand, within CSW01_03620 at 739.168 kb on - strand, within CSW01_03620 at 739.213 kb on - strand, within CSW01_03620 at 739.284 kb on - strand, within CSW01_03620 at 739.296 kb on - strand, within CSW01_03620 at 739.401 kb on + strand, within CSW01_03620 at 739.474 kb on - strand, within CSW01_03620 at 739.498 kb on + strand, within CSW01_03620
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15B remove 736,448 + +0.3 736,481 - +2.2 736,496 - +0.2 736,535 - +0.5 736,560 - CSW01_03610 0.11 +0.1 736,574 - CSW01_03610 0.12 +0.4 736,713 - CSW01_03610 0.27 +0.1 736,713 - CSW01_03610 0.27 -1.5 736,756 + CSW01_03610 0.32 -0.4 736,764 - CSW01_03610 0.33 -0.2 736,764 - CSW01_03610 0.33 +0.1 736,764 - CSW01_03610 0.33 +0.9 736,880 - CSW01_03610 0.46 +0.1 736,880 - CSW01_03610 0.46 +0.3 736,921 + CSW01_03610 0.50 +3.2 736,921 + CSW01_03610 0.50 -0.4 736,921 + CSW01_03610 0.50 +2.6 736,929 - CSW01_03610 0.51 -0.2 736,929 - CSW01_03610 0.51 +0.6 736,929 - CSW01_03610 0.51 -0.5 736,944 + CSW01_03610 0.52 -0.5 736,970 - CSW01_03610 0.55 -0.4 736,989 + CSW01_03610 0.57 +0.6 737,015 - CSW01_03610 0.60 +0.4 737,094 + CSW01_03610 0.69 +0.5 737,094 + CSW01_03610 0.69 -0.9 737,102 - CSW01_03610 0.70 +0.6 737,102 - CSW01_03610 0.70 +1.1 737,120 - CSW01_03610 0.72 +0.9 737,131 + CSW01_03610 0.73 +0.9 737,154 + CSW01_03610 0.75 +0.2 737,167 - CSW01_03610 0.77 -0.2 737,250 - CSW01_03610 0.86 -0.5 737,299 + +0.6 737,326 + +0.1 737,523 - CSW01_03615 0.11 -0.0 737,549 - CSW01_03615 0.13 +0.0 737,615 - CSW01_03615 0.19 -0.2 737,642 + CSW01_03615 0.22 -0.9 737,650 - CSW01_03615 0.22 -0.5 737,709 + CSW01_03615 0.28 +0.6 737,709 + CSW01_03615 0.28 -0.1 737,709 + CSW01_03615 0.28 +1.2 737,717 - CSW01_03615 0.28 -0.3 737,833 + CSW01_03615 0.39 +0.6 737,859 + CSW01_03615 0.41 -0.1 737,867 - CSW01_03615 0.42 +0.9 737,867 - CSW01_03615 0.42 +0.8 737,937 + CSW01_03615 0.48 +0.4 737,968 + CSW01_03615 0.51 +1.8 737,970 - CSW01_03615 0.51 +0.1 738,066 + CSW01_03615 0.60 -0.3 738,074 - CSW01_03615 0.61 +2.2 738,078 + CSW01_03615 0.61 -1.9 738,078 + CSW01_03615 0.61 +1.4 738,078 + CSW01_03615 0.61 +0.1 738,145 + CSW01_03615 0.67 +0.1 738,183 - CSW01_03615 0.70 -0.0 738,199 - CSW01_03615 0.72 +0.1 738,215 + CSW01_03615 0.73 +0.6 738,237 + CSW01_03615 0.75 +0.8 738,245 - CSW01_03615 0.76 -0.2 738,264 - CSW01_03615 0.78 -0.1 738,281 + CSW01_03615 0.79 -1.5 738,289 - CSW01_03615 0.80 +0.5 738,314 + CSW01_03615 0.82 +0.3 738,394 + CSW01_03615 0.89 +0.6 738,394 + CSW01_03615 0.89 +0.3 738,402 - -0.8 738,424 - +1.2 738,489 + -0.1 738,497 - -1.4 738,535 - +0.7 738,631 + -1.2 738,639 - +0.5 738,639 - -0.3 738,685 + -0.2 738,685 + -0.8 738,690 + +0.1 738,693 - +0.1 738,727 + CSW01_03620 0.11 +0.4 738,856 - CSW01_03620 0.24 +0.1 738,863 + CSW01_03620 0.25 -1.1 738,863 + CSW01_03620 0.25 +0.5 738,863 + CSW01_03620 0.25 -0.6 738,866 - CSW01_03620 0.25 -0.1 738,870 - CSW01_03620 0.25 +0.9 738,871 - CSW01_03620 0.25 +0.6 738,871 - CSW01_03620 0.25 +1.5 738,876 + CSW01_03620 0.26 +0.1 738,886 + CSW01_03620 0.27 +1.0 738,908 - CSW01_03620 0.29 +0.5 738,908 - CSW01_03620 0.29 +0.4 738,966 + CSW01_03620 0.35 +0.9 738,978 + CSW01_03620 0.36 +0.6 739,046 - CSW01_03620 0.43 +0.6 739,091 + CSW01_03620 0.48 +0.3 739,168 - CSW01_03620 0.55 +1.0 739,213 - CSW01_03620 0.60 -0.1 739,284 - CSW01_03620 0.67 +1.1 739,296 - CSW01_03620 0.68 +0.9 739,401 + CSW01_03620 0.79 +1.1 739,474 - CSW01_03620 0.86 -0.2 739,498 + CSW01_03620 0.89 -0.6
Or see this region's nucleotide sequence