Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03555

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03550 and CSW01_03555 are separated by 198 nucleotidesCSW01_03555 and CSW01_03560 are separated by 68 nucleotidesCSW01_03560 and CSW01_03565 are separated by 242 nucleotides CSW01_03550: CSW01_03550 - transcriptional activator protein NhaR, at 722,799 to 723,689 _03550 CSW01_03555: CSW01_03555 - transcriptional regulator, at 723,888 to 724,214 _03555 CSW01_03560: CSW01_03560 - 30S ribosomal protein S20, at 724,283 to 724,543 _03560 CSW01_03565: CSW01_03565 - lipid II flippase MurJ, at 724,786 to 726,363 _03565 Position (kb) 723 724 725Strain fitness (log2 ratio) -2 -1 0 1at 722.912 kb on + strand, within CSW01_03550at 722.912 kb on + strand, within CSW01_03550at 722.920 kb on - strand, within CSW01_03550at 722.920 kb on - strand, within CSW01_03550at 722.968 kb on + strand, within CSW01_03550at 722.968 kb on + strand, within CSW01_03550at 722.968 kb on + strand, within CSW01_03550at 722.968 kb on + strand, within CSW01_03550at 722.968 kb on + strand, within CSW01_03550at 722.968 kb on + strand, within CSW01_03550at 722.968 kb on + strand, within CSW01_03550at 722.968 kb on + strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.982 kb on + strand, within CSW01_03550at 723.012 kb on + strand, within CSW01_03550at 723.020 kb on - strand, within CSW01_03550at 723.103 kb on - strand, within CSW01_03550at 723.139 kb on + strand, within CSW01_03550at 723.139 kb on + strand, within CSW01_03550at 723.139 kb on + strand, within CSW01_03550at 723.147 kb on - strand, within CSW01_03550at 723.147 kb on - strand, within CSW01_03550at 723.147 kb on - strand, within CSW01_03550at 723.147 kb on - strand, within CSW01_03550at 723.147 kb on - strand, within CSW01_03550at 723.147 kb on - strand, within CSW01_03550at 723.165 kb on + strand, within CSW01_03550at 723.175 kb on + strand, within CSW01_03550at 723.175 kb on + strand, within CSW01_03550at 723.175 kb on + strand, within CSW01_03550at 723.175 kb on + strand, within CSW01_03550at 723.183 kb on - strand, within CSW01_03550at 723.183 kb on - strand, within CSW01_03550at 723.183 kb on - strand, within CSW01_03550at 723.194 kb on - strand, within CSW01_03550at 723.207 kb on + strand, within CSW01_03550at 723.208 kb on + strand, within CSW01_03550at 723.354 kb on + strand, within CSW01_03550at 723.354 kb on + strand, within CSW01_03550at 723.362 kb on - strand, within CSW01_03550at 723.362 kb on - strand, within CSW01_03550at 723.378 kb on + strand, within CSW01_03550at 723.378 kb on + strand, within CSW01_03550at 723.435 kb on + strand, within CSW01_03550at 723.444 kb on - strand, within CSW01_03550at 723.474 kb on + strand, within CSW01_03550at 723.482 kb on - strand, within CSW01_03550at 723.511 kb on - strand, within CSW01_03550at 723.513 kb on - strand, within CSW01_03550at 723.590 kb on + strand, within CSW01_03550at 723.602 kb on + strandat 723.635 kb on + strandat 723.635 kb on + strandat 724.055 kb on + strand, within CSW01_03555at 724.136 kb on + strand, within CSW01_03555at 724.151 kb on - strand, within CSW01_03555at 724.153 kb on + strand, within CSW01_03555at 724.153 kb on + strand, within CSW01_03555at 724.153 kb on + strand, within CSW01_03555at 724.153 kb on + strand, within CSW01_03555at 724.161 kb on - strand, within CSW01_03555at 724.161 kb on - strand, within CSW01_03555at 724.161 kb on - strand, within CSW01_03555at 724.717 kb on + strandat 724.735 kb on - strandat 724.747 kb on + strandat 724.801 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15B
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722,912 + CSW01_03550 0.13 +0.6
722,912 + CSW01_03550 0.13 +1.5
722,920 - CSW01_03550 0.14 -0.2
722,920 - CSW01_03550 0.14 +0.5
722,968 + CSW01_03550 0.19 -0.7
722,968 + CSW01_03550 0.19 +0.4
722,968 + CSW01_03550 0.19 -0.1
722,968 + CSW01_03550 0.19 +0.5
722,968 + CSW01_03550 0.19 -0.3
722,968 + CSW01_03550 0.19 +0.6
722,968 + CSW01_03550 0.19 -0.3
722,968 + CSW01_03550 0.19 -0.7
722,976 - CSW01_03550 0.20 -0.1
722,976 - CSW01_03550 0.20 +0.3
722,976 - CSW01_03550 0.20 +0.5
722,976 - CSW01_03550 0.20 +0.4
722,976 - CSW01_03550 0.20 -0.2
722,976 - CSW01_03550 0.20 +0.4
722,976 - CSW01_03550 0.20 -0.0
722,976 - CSW01_03550 0.20 -0.6
722,976 - CSW01_03550 0.20 +0.2
722,976 - CSW01_03550 0.20 +0.7
722,976 - CSW01_03550 0.20 +0.1
722,976 - CSW01_03550 0.20 +0.1
722,976 - CSW01_03550 0.20 +0.6
722,982 + CSW01_03550 0.21 -0.6
723,012 + CSW01_03550 0.24 +0.8
723,020 - CSW01_03550 0.25 -0.5
723,103 - CSW01_03550 0.34 +0.1
723,139 + CSW01_03550 0.38 -0.0
723,139 + CSW01_03550 0.38 +0.9
723,139 + CSW01_03550 0.38 +0.1
723,147 - CSW01_03550 0.39 +0.5
723,147 - CSW01_03550 0.39 +0.1
723,147 - CSW01_03550 0.39 -0.2
723,147 - CSW01_03550 0.39 +0.8
723,147 - CSW01_03550 0.39 -0.1
723,147 - CSW01_03550 0.39 +1.0
723,165 + CSW01_03550 0.41 +0.3
723,175 + CSW01_03550 0.42 -0.1
723,175 + CSW01_03550 0.42 +0.4
723,175 + CSW01_03550 0.42 -0.3
723,175 + CSW01_03550 0.42 +0.8
723,183 - CSW01_03550 0.43 +1.6
723,183 - CSW01_03550 0.43 -0.4
723,183 - CSW01_03550 0.43 +0.2
723,194 - CSW01_03550 0.44 +0.6
723,207 + CSW01_03550 0.46 +0.9
723,208 + CSW01_03550 0.46 +0.6
723,354 + CSW01_03550 0.62 +0.1
723,354 + CSW01_03550 0.62 +0.5
723,362 - CSW01_03550 0.63 +0.7
723,362 - CSW01_03550 0.63 +1.5
723,378 + CSW01_03550 0.65 +0.5
723,378 + CSW01_03550 0.65 +1.5
723,435 + CSW01_03550 0.71 +0.3
723,444 - CSW01_03550 0.72 -0.0
723,474 + CSW01_03550 0.76 -0.5
723,482 - CSW01_03550 0.77 -0.5
723,511 - CSW01_03550 0.80 -0.0
723,513 - CSW01_03550 0.80 -0.6
723,590 + CSW01_03550 0.89 +0.7
723,602 + -0.0
723,635 + +0.9
723,635 + +0.3
724,055 + CSW01_03555 0.51 +0.3
724,136 + CSW01_03555 0.76 +0.6
724,151 - CSW01_03555 0.80 +0.2
724,153 + CSW01_03555 0.81 +0.2
724,153 + CSW01_03555 0.81 -0.2
724,153 + CSW01_03555 0.81 +0.5
724,153 + CSW01_03555 0.81 -0.2
724,161 - CSW01_03555 0.83 -1.2
724,161 - CSW01_03555 0.83 +0.3
724,161 - CSW01_03555 0.83 +0.5
724,717 + -0.4
724,735 - -2.2
724,747 + -0.1
724,801 - +0.0

Or see this region's nucleotide sequence