Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03480

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03475 and CSW01_03480 are separated by 87 nucleotidesCSW01_03480 and CSW01_03485 are separated by 308 nucleotides CSW01_03475: CSW01_03475 - ATP-dependent RNA helicase SrmB, at 704,331 to 705,602 _03475 CSW01_03480: CSW01_03480 - tRNA (adenosine(37)-N6)-methyltransferase TrmM, at 705,690 to 706,412 _03480 CSW01_03485: CSW01_03485 - branched-chain amino acid transport system II carrier protein, at 706,721 to 708,034 _03485 Position (kb) 705 706 707Strain fitness (log2 ratio) -2 -1 0 1 2at 705.012 kb on + strand, within CSW01_03475at 705.037 kb on - strand, within CSW01_03475at 705.037 kb on - strand, within CSW01_03475at 705.147 kb on - strand, within CSW01_03475at 705.186 kb on - strand, within CSW01_03475at 705.205 kb on + strand, within CSW01_03475at 705.237 kb on - strand, within CSW01_03475at 705.385 kb on + strand, within CSW01_03475at 705.387 kb on - strand, within CSW01_03475at 705.468 kb on + strand, within CSW01_03475at 705.468 kb on + strand, within CSW01_03475at 705.468 kb on + strand, within CSW01_03475at 705.476 kb on - strandat 705.476 kb on - strandat 705.614 kb on + strandat 705.635 kb on + strandat 705.739 kb on + strandat 705.739 kb on + strandat 705.739 kb on + strandat 705.739 kb on + strandat 705.739 kb on + strandat 705.739 kb on + strandat 705.739 kb on + strandat 705.746 kb on - strandat 705.747 kb on - strandat 705.747 kb on - strandat 705.747 kb on - strandat 705.747 kb on - strandat 705.747 kb on - strandat 705.801 kb on - strand, within CSW01_03480at 705.839 kb on - strand, within CSW01_03480at 705.870 kb on + strand, within CSW01_03480at 705.885 kb on + strand, within CSW01_03480at 705.893 kb on - strand, within CSW01_03480at 705.899 kb on + strand, within CSW01_03480at 705.931 kb on - strand, within CSW01_03480at 705.956 kb on + strand, within CSW01_03480at 705.956 kb on + strand, within CSW01_03480at 705.964 kb on - strand, within CSW01_03480at 706.015 kb on + strand, within CSW01_03480at 706.133 kb on + strand, within CSW01_03480at 706.138 kb on + strand, within CSW01_03480at 706.141 kb on - strand, within CSW01_03480at 706.146 kb on - strand, within CSW01_03480at 706.227 kb on - strand, within CSW01_03480at 706.244 kb on - strand, within CSW01_03480at 706.258 kb on - strand, within CSW01_03480at 706.335 kb on - strand, within CSW01_03480at 706.368 kb on - strandat 706.638 kb on + strandat 706.663 kb on + strandat 706.706 kb on + strandat 706.712 kb on + strandat 706.761 kb on + strandat 706.762 kb on - strandat 706.825 kb on + strandat 706.837 kb on + strandat 706.845 kb on - strandat 706.848 kb on - strandat 706.967 kb on + strand, within CSW01_03485at 706.975 kb on - strand, within CSW01_03485at 706.975 kb on - strand, within CSW01_03485at 706.992 kb on - strand, within CSW01_03485at 707.027 kb on + strand, within CSW01_03485at 707.027 kb on + strand, within CSW01_03485at 707.117 kb on + strand, within CSW01_03485at 707.123 kb on + strand, within CSW01_03485at 707.173 kb on + strand, within CSW01_03485at 707.194 kb on - strand, within CSW01_03485at 707.208 kb on - strand, within CSW01_03485at 707.210 kb on + strand, within CSW01_03485at 707.240 kb on - strand, within CSW01_03485at 707.284 kb on - strand, within CSW01_03485at 707.308 kb on - strand, within CSW01_03485at 707.310 kb on - strand, within CSW01_03485at 707.372 kb on + strand, within CSW01_03485at 707.381 kb on - strand, within CSW01_03485at 707.412 kb on + strand, within CSW01_03485

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15B
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705,012 + CSW01_03475 0.54 +2.2
705,037 - CSW01_03475 0.56 +0.3
705,037 - CSW01_03475 0.56 +0.6
705,147 - CSW01_03475 0.64 +0.3
705,186 - CSW01_03475 0.67 +0.6
705,205 + CSW01_03475 0.69 -1.2
705,237 - CSW01_03475 0.71 +0.1
705,385 + CSW01_03475 0.83 +0.3
705,387 - CSW01_03475 0.83 -0.8
705,468 + CSW01_03475 0.89 +1.2
705,468 + CSW01_03475 0.89 -0.7
705,468 + CSW01_03475 0.89 -0.3
705,476 - +0.6
705,476 - -1.8
705,614 + -1.4
705,635 + +0.3
705,739 + +0.2
705,739 + -1.0
705,739 + +0.7
705,739 + +0.6
705,739 + +0.8
705,739 + -0.6
705,739 + +0.4
705,746 - +0.5
705,747 - -0.1
705,747 - +0.1
705,747 - -0.0
705,747 - +0.2
705,747 - -0.0
705,801 - CSW01_03480 0.15 +0.2
705,839 - CSW01_03480 0.21 -0.1
705,870 + CSW01_03480 0.25 +0.5
705,885 + CSW01_03480 0.27 +0.5
705,893 - CSW01_03480 0.28 +0.6
705,899 + CSW01_03480 0.29 +0.2
705,931 - CSW01_03480 0.33 -0.5
705,956 + CSW01_03480 0.37 +0.9
705,956 + CSW01_03480 0.37 -0.3
705,964 - CSW01_03480 0.38 -0.6
706,015 + CSW01_03480 0.45 -0.1
706,133 + CSW01_03480 0.61 +0.3
706,138 + CSW01_03480 0.62 +1.3
706,141 - CSW01_03480 0.62 +0.7
706,146 - CSW01_03480 0.63 +0.1
706,227 - CSW01_03480 0.74 +0.0
706,244 - CSW01_03480 0.77 -0.1
706,258 - CSW01_03480 0.79 +0.2
706,335 - CSW01_03480 0.89 +0.1
706,368 - +0.1
706,638 + +1.0
706,663 + +0.2
706,706 + -0.0
706,712 + +0.5
706,761 + +0.4
706,762 - +0.4
706,825 + -1.6
706,837 + -1.0
706,845 - +0.0
706,848 - +0.7
706,967 + CSW01_03485 0.19 -0.5
706,975 - CSW01_03485 0.19 +1.1
706,975 - CSW01_03485 0.19 +0.1
706,992 - CSW01_03485 0.21 -0.5
707,027 + CSW01_03485 0.23 -0.9
707,027 + CSW01_03485 0.23 -0.5
707,117 + CSW01_03485 0.30 -0.2
707,123 + CSW01_03485 0.31 +0.5
707,173 + CSW01_03485 0.34 +0.3
707,194 - CSW01_03485 0.36 +0.4
707,208 - CSW01_03485 0.37 -0.3
707,210 + CSW01_03485 0.37 -1.4
707,240 - CSW01_03485 0.39 +0.0
707,284 - CSW01_03485 0.43 -0.3
707,308 - CSW01_03485 0.45 +0.0
707,310 - CSW01_03485 0.45 -0.5
707,372 + CSW01_03485 0.50 -0.5
707,381 - CSW01_03485 0.50 +1.2
707,412 + CSW01_03485 0.53 +0.1

Or see this region's nucleotide sequence