Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02615

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02610 and CSW01_02615 are separated by 255 nucleotidesCSW01_02615 and CSW01_02620 are separated by 384 nucleotides CSW01_02610: CSW01_02610 - hypothetical protein, at 524,363 to 525,529 _02610 CSW01_02615: CSW01_02615 - MarR family transcriptional regulator, at 525,785 to 526,660 _02615 CSW01_02620: CSW01_02620 - inovirus Gp2 family protein, at 527,045 to 527,689 _02620 Position (kb) 525 526 527Strain fitness (log2 ratio) -2 -1 0 1 2at 524.805 kb on + strand, within CSW01_02610at 524.882 kb on + strand, within CSW01_02610at 524.882 kb on + strand, within CSW01_02610at 524.890 kb on - strand, within CSW01_02610at 524.890 kb on - strand, within CSW01_02610at 524.890 kb on - strand, within CSW01_02610at 524.890 kb on - strand, within CSW01_02610at 524.890 kb on - strand, within CSW01_02610at 524.890 kb on - strand, within CSW01_02610at 524.915 kb on + strand, within CSW01_02610at 524.915 kb on + strand, within CSW01_02610at 524.915 kb on + strand, within CSW01_02610at 524.915 kb on + strand, within CSW01_02610at 524.915 kb on + strand, within CSW01_02610at 524.915 kb on + strand, within CSW01_02610at 524.915 kb on + strand, within CSW01_02610at 524.915 kb on + strand, within CSW01_02610at 524.915 kb on + strand, within CSW01_02610at 524.915 kb on + strand, within CSW01_02610at 524.915 kb on + strand, within CSW01_02610at 524.915 kb on + strand, within CSW01_02610at 524.915 kb on + strand, within CSW01_02610at 524.915 kb on + strand, within CSW01_02610at 524.915 kb on + strand, within CSW01_02610at 524.915 kb on + strand, within CSW01_02610at 524.915 kb on + strand, within CSW01_02610at 524.915 kb on + strand, within CSW01_02610at 524.915 kb on + strand, within CSW01_02610at 524.915 kb on + strand, within CSW01_02610at 524.920 kb on + strand, within CSW01_02610at 524.923 kb on - strand, within CSW01_02610at 524.923 kb on - strand, within CSW01_02610at 524.923 kb on - strand, within CSW01_02610at 524.923 kb on - strand, within CSW01_02610at 524.923 kb on - strand, within CSW01_02610at 524.923 kb on - strand, within CSW01_02610at 524.923 kb on - strand, within CSW01_02610at 524.923 kb on - strand, within CSW01_02610at 524.923 kb on - strand, within CSW01_02610at 524.923 kb on - strand, within CSW01_02610at 524.923 kb on - strand, within CSW01_02610at 524.923 kb on - strand, within CSW01_02610at 524.923 kb on - strand, within CSW01_02610at 524.923 kb on - strand, within CSW01_02610at 524.923 kb on - strand, within CSW01_02610at 524.923 kb on - strand, within CSW01_02610at 524.923 kb on - strand, within CSW01_02610at 524.923 kb on - strand, within CSW01_02610at 524.923 kb on - strand, within CSW01_02610at 524.923 kb on - strand, within CSW01_02610at 524.925 kb on + strand, within CSW01_02610at 524.925 kb on + strand, within CSW01_02610at 524.925 kb on + strand, within CSW01_02610at 524.928 kb on - strand, within CSW01_02610at 524.928 kb on - strand, within CSW01_02610at 524.933 kb on - strand, within CSW01_02610at 524.933 kb on - strand, within CSW01_02610at 524.994 kb on + strand, within CSW01_02610at 525.028 kb on + strand, within CSW01_02610at 525.172 kb on + strand, within CSW01_02610at 525.244 kb on + strand, within CSW01_02610at 525.249 kb on + strand, within CSW01_02610at 525.251 kb on - strand, within CSW01_02610at 525.384 kb on - strand, within CSW01_02610at 525.448 kb on + strandat 525.454 kb on + strandat 525.460 kb on + strandat 525.474 kb on - strandat 525.513 kb on + strandat 525.516 kb on - strandat 525.521 kb on - strandat 525.715 kb on - strandat 525.874 kb on + strand, within CSW01_02615at 525.925 kb on - strand, within CSW01_02615at 525.925 kb on - strand, within CSW01_02615at 525.939 kb on - strand, within CSW01_02615at 525.939 kb on - strand, within CSW01_02615at 526.114 kb on - strand, within CSW01_02615at 526.157 kb on + strand, within CSW01_02615at 526.164 kb on - strand, within CSW01_02615at 526.170 kb on - strand, within CSW01_02615at 526.244 kb on - strand, within CSW01_02615at 526.392 kb on + strand, within CSW01_02615at 526.400 kb on - strand, within CSW01_02615at 526.417 kb on - strand, within CSW01_02615at 526.428 kb on - strand, within CSW01_02615at 526.456 kb on + strand, within CSW01_02615at 526.622 kb on - strandat 526.629 kb on + strandat 526.634 kb on + strandat 526.637 kb on - strandat 526.831 kb on + strandat 526.969 kb on + strandat 527.038 kb on - strandat 527.139 kb on + strand, within CSW01_02620at 527.147 kb on - strand, within CSW01_02620at 527.147 kb on - strand, within CSW01_02620at 527.148 kb on - strand, within CSW01_02620at 527.163 kb on + strand, within CSW01_02620at 527.163 kb on + strand, within CSW01_02620at 527.163 kb on + strand, within CSW01_02620at 527.163 kb on + strand, within CSW01_02620at 527.163 kb on + strand, within CSW01_02620at 527.171 kb on - strand, within CSW01_02620at 527.201 kb on + strand, within CSW01_02620at 527.201 kb on + strand, within CSW01_02620at 527.201 kb on + strand, within CSW01_02620at 527.209 kb on + strand, within CSW01_02620at 527.209 kb on - strand, within CSW01_02620at 527.209 kb on - strand, within CSW01_02620at 527.229 kb on - strand, within CSW01_02620at 527.238 kb on - strand, within CSW01_02620at 527.297 kb on + strand, within CSW01_02620at 527.325 kb on + strand, within CSW01_02620at 527.330 kb on - strand, within CSW01_02620at 527.435 kb on - strand, within CSW01_02620at 527.435 kb on - strand, within CSW01_02620at 527.435 kb on - strand, within CSW01_02620at 527.480 kb on + strand, within CSW01_02620at 527.503 kb on - strand, within CSW01_02620at 527.511 kb on - strand, within CSW01_02620at 527.513 kb on + strand, within CSW01_02620at 527.571 kb on + strand, within CSW01_02620at 527.571 kb on + strand, within CSW01_02620at 527.571 kb on + strand, within CSW01_02620at 527.579 kb on - strand, within CSW01_02620at 527.579 kb on - strand, within CSW01_02620at 527.588 kb on - strand, within CSW01_02620at 527.593 kb on + strand, within CSW01_02620at 527.601 kb on - strand, within CSW01_02620at 527.601 kb on - strand, within CSW01_02620at 527.617 kb on + strand, within CSW01_02620at 527.625 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15B
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524,805 + CSW01_02610 0.38 +0.5
524,882 + CSW01_02610 0.44 -0.3
524,882 + CSW01_02610 0.44 +0.2
524,890 - CSW01_02610 0.45 -0.1
524,890 - CSW01_02610 0.45 +0.1
524,890 - CSW01_02610 0.45 +0.1
524,890 - CSW01_02610 0.45 +0.3
524,890 - CSW01_02610 0.45 -0.7
524,890 - CSW01_02610 0.45 -0.6
524,915 + CSW01_02610 0.47 -0.3
524,915 + CSW01_02610 0.47 -0.5
524,915 + CSW01_02610 0.47 +1.9
524,915 + CSW01_02610 0.47 +0.2
524,915 + CSW01_02610 0.47 +1.3
524,915 + CSW01_02610 0.47 -0.7
524,915 + CSW01_02610 0.47 -0.5
524,915 + CSW01_02610 0.47 -0.5
524,915 + CSW01_02610 0.47 +0.5
524,915 + CSW01_02610 0.47 -0.3
524,915 + CSW01_02610 0.47 -0.0
524,915 + CSW01_02610 0.47 +0.3
524,915 + CSW01_02610 0.47 +0.2
524,915 + CSW01_02610 0.47 +0.7
524,915 + CSW01_02610 0.47 +1.9
524,915 + CSW01_02610 0.47 -1.8
524,915 + CSW01_02610 0.47 +0.3
524,915 + CSW01_02610 0.47 +0.0
524,915 + CSW01_02610 0.47 -0.1
524,915 + CSW01_02610 0.47 -0.1
524,920 + CSW01_02610 0.48 +0.2
524,923 - CSW01_02610 0.48 +0.2
524,923 - CSW01_02610 0.48 +0.5
524,923 - CSW01_02610 0.48 +1.1
524,923 - CSW01_02610 0.48 +0.4
524,923 - CSW01_02610 0.48 -0.0
524,923 - CSW01_02610 0.48 +0.0
524,923 - CSW01_02610 0.48 +0.2
524,923 - CSW01_02610 0.48 +0.3
524,923 - CSW01_02610 0.48 +0.2
524,923 - CSW01_02610 0.48 -0.6
524,923 - CSW01_02610 0.48 +0.7
524,923 - CSW01_02610 0.48 -1.6
524,923 - CSW01_02610 0.48 -0.3
524,923 - CSW01_02610 0.48 +0.7
524,923 - CSW01_02610 0.48 -0.9
524,923 - CSW01_02610 0.48 +0.2
524,923 - CSW01_02610 0.48 +0.1
524,923 - CSW01_02610 0.48 -0.0
524,923 - CSW01_02610 0.48 -0.3
524,923 - CSW01_02610 0.48 +0.7
524,925 + CSW01_02610 0.48 +0.0
524,925 + CSW01_02610 0.48 -0.1
524,925 + CSW01_02610 0.48 -0.9
524,928 - CSW01_02610 0.48 -0.2
524,928 - CSW01_02610 0.48 -1.1
524,933 - CSW01_02610 0.49 -0.6
524,933 - CSW01_02610 0.49 +0.4
524,994 + CSW01_02610 0.54 -0.6
525,028 + CSW01_02610 0.57 +0.5
525,172 + CSW01_02610 0.69 +0.9
525,244 + CSW01_02610 0.75 -0.3
525,249 + CSW01_02610 0.76 -0.5
525,251 - CSW01_02610 0.76 +0.3
525,384 - CSW01_02610 0.87 +0.0
525,448 + +0.6
525,454 + +0.1
525,460 + -0.0
525,474 - +0.5
525,513 + +0.4
525,516 - +0.3
525,521 - +0.6
525,715 - -0.4
525,874 + CSW01_02615 0.10 -1.5
525,925 - CSW01_02615 0.16 +0.0
525,925 - CSW01_02615 0.16 +0.3
525,939 - CSW01_02615 0.18 +0.5
525,939 - CSW01_02615 0.18 -0.4
526,114 - CSW01_02615 0.38 -0.3
526,157 + CSW01_02615 0.42 +0.7
526,164 - CSW01_02615 0.43 -0.9
526,170 - CSW01_02615 0.44 +0.1
526,244 - CSW01_02615 0.52 +0.6
526,392 + CSW01_02615 0.69 -0.0
526,400 - CSW01_02615 0.70 -0.1
526,417 - CSW01_02615 0.72 -0.1
526,428 - CSW01_02615 0.73 -0.4
526,456 + CSW01_02615 0.77 -0.4
526,622 - -0.4
526,629 + +0.6
526,634 + +0.2
526,637 - -0.4
526,831 + +0.4
526,969 + +0.1
527,038 - -0.3
527,139 + CSW01_02620 0.15 +0.1
527,147 - CSW01_02620 0.16 -0.5
527,147 - CSW01_02620 0.16 -0.0
527,148 - CSW01_02620 0.16 -0.3
527,163 + CSW01_02620 0.18 -1.3
527,163 + CSW01_02620 0.18 -0.3
527,163 + CSW01_02620 0.18 +0.1
527,163 + CSW01_02620 0.18 +0.9
527,163 + CSW01_02620 0.18 +0.7
527,171 - CSW01_02620 0.20 -0.7
527,201 + CSW01_02620 0.24 -0.3
527,201 + CSW01_02620 0.24 +0.1
527,201 + CSW01_02620 0.24 +1.8
527,209 + CSW01_02620 0.25 -1.2
527,209 - CSW01_02620 0.25 +0.1
527,209 - CSW01_02620 0.25 +0.1
527,229 - CSW01_02620 0.29 -0.1
527,238 - CSW01_02620 0.30 +0.5
527,297 + CSW01_02620 0.39 -0.3
527,325 + CSW01_02620 0.43 -0.7
527,330 - CSW01_02620 0.44 +0.5
527,435 - CSW01_02620 0.60 -0.5
527,435 - CSW01_02620 0.60 -0.2
527,435 - CSW01_02620 0.60 +0.1
527,480 + CSW01_02620 0.67 -1.0
527,503 - CSW01_02620 0.71 +0.7
527,511 - CSW01_02620 0.72 -0.4
527,513 + CSW01_02620 0.73 +0.2
527,571 + CSW01_02620 0.82 +0.1
527,571 + CSW01_02620 0.82 -0.1
527,571 + CSW01_02620 0.82 -0.2
527,579 - CSW01_02620 0.83 +0.1
527,579 - CSW01_02620 0.83 -1.2
527,588 - CSW01_02620 0.84 +0.2
527,593 + CSW01_02620 0.85 +1.0
527,601 - CSW01_02620 0.86 -0.2
527,601 - CSW01_02620 0.86 -0.2
527,617 + CSW01_02620 0.89 -0.1
527,625 - -0.7

Or see this region's nucleotide sequence