Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02430 and CSW01_02435 are separated by 69 nucleotides CSW01_02435 and CSW01_02440 are separated by 45 nucleotides CSW01_02440 and CSW01_02445 overlap by 1 nucleotides CSW01_02445 and CSW01_02450 are separated by 53 nucleotides
CSW01_02430: CSW01_02430 - non-canonical purine NTP pyrophosphatase, at 486,379 to 486,981
_02430
CSW01_02435: CSW01_02435 - DUF4426 domain-containing protein, at 487,051 to 487,482
_02435
CSW01_02440: CSW01_02440 - YggU family protein, at 487,528 to 487,818
_02440
CSW01_02445: CSW01_02445 - hypothetical protein, at 487,818 to 488,375
_02445
CSW01_02450: CSW01_02450 - pyrroline-5-carboxylate reductase, at 488,429 to 489,247
_02450
Position (kb) 487
488 Strain fitness (log2 ratio) -2
-1
0
1
2 at 486.613 kb on + strand, within CSW01_02430 at 486.621 kb on - strand, within CSW01_02430 at 486.657 kb on - strand, within CSW01_02430 at 486.738 kb on - strand, within CSW01_02430 at 486.908 kb on - strand, within CSW01_02430 at 486.987 kb on + strand at 487.028 kb on - strand at 487.048 kb on + strand at 487.061 kb on + strand at 487.061 kb on + strand at 487.061 kb on + strand at 487.061 kb on + strand at 487.061 kb on + strand at 487.061 kb on + strand at 487.069 kb on - strand at 487.069 kb on - strand at 487.069 kb on - strand at 487.099 kb on + strand, within CSW01_02435 at 487.129 kb on + strand, within CSW01_02435 at 487.129 kb on + strand, within CSW01_02435 at 487.187 kb on + strand, within CSW01_02435 at 487.187 kb on + strand, within CSW01_02435 at 487.197 kb on + strand, within CSW01_02435 at 487.230 kb on + strand, within CSW01_02435 at 487.268 kb on + strand, within CSW01_02435 at 487.343 kb on - strand, within CSW01_02435 at 487.353 kb on + strand, within CSW01_02435 at 487.375 kb on + strand, within CSW01_02435 at 487.420 kb on - strand, within CSW01_02435 at 487.422 kb on + strand, within CSW01_02435 at 487.441 kb on + strand at 487.620 kb on + strand, within CSW01_02440 at 487.628 kb on - strand, within CSW01_02440 at 487.636 kb on - strand, within CSW01_02440 at 487.640 kb on + strand, within CSW01_02440 at 487.719 kb on - strand, within CSW01_02440 at 487.732 kb on - strand, within CSW01_02440 at 487.769 kb on + strand, within CSW01_02440 at 487.782 kb on + strand, within CSW01_02440 at 487.796 kb on + strand at 487.797 kb on - strand at 487.797 kb on - strand at 487.801 kb on + strand at 487.824 kb on - strand at 487.832 kb on + strand at 487.837 kb on + strand at 487.837 kb on + strand at 487.845 kb on - strand at 487.887 kb on - strand, within CSW01_02445 at 487.887 kb on - strand, within CSW01_02445 at 487.898 kb on - strand, within CSW01_02445 at 487.904 kb on + strand, within CSW01_02445 at 487.912 kb on - strand, within CSW01_02445 at 487.912 kb on - strand, within CSW01_02445 at 487.912 kb on - strand, within CSW01_02445 at 487.912 kb on - strand, within CSW01_02445 at 488.008 kb on - strand, within CSW01_02445 at 488.010 kb on + strand, within CSW01_02445 at 488.010 kb on + strand, within CSW01_02445 at 488.059 kb on + strand, within CSW01_02445 at 488.059 kb on + strand, within CSW01_02445 at 488.067 kb on - strand, within CSW01_02445 at 488.093 kb on + strand, within CSW01_02445 at 488.098 kb on + strand, within CSW01_02445 at 488.108 kb on + strand, within CSW01_02445 at 488.108 kb on + strand, within CSW01_02445 at 488.111 kb on - strand, within CSW01_02445 at 488.111 kb on - strand, within CSW01_02445 at 488.141 kb on - strand, within CSW01_02445 at 488.197 kb on - strand, within CSW01_02445 at 488.210 kb on + strand, within CSW01_02445 at 488.218 kb on - strand, within CSW01_02445 at 488.227 kb on + strand, within CSW01_02445 at 488.324 kb on + strand at 488.324 kb on + strand at 488.332 kb on - strand at 488.506 kb on - strand at 488.509 kb on + strand at 488.516 kb on + strand, within CSW01_02450 at 488.584 kb on + strand, within CSW01_02450 at 488.592 kb on - strand, within CSW01_02450 at 488.595 kb on + strand, within CSW01_02450 at 488.595 kb on + strand, within CSW01_02450 at 488.603 kb on - strand, within CSW01_02450 at 488.663 kb on + strand, within CSW01_02450 at 488.755 kb on - strand, within CSW01_02450 at 488.777 kb on + strand, within CSW01_02450 at 488.777 kb on - strand, within CSW01_02450 at 488.777 kb on - strand, within CSW01_02450 at 488.808 kb on - strand, within CSW01_02450 at 488.813 kb on + strand, within CSW01_02450 at 488.813 kb on + strand, within CSW01_02450
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15B remove 486,613 + CSW01_02430 0.39 -1.7 486,621 - CSW01_02430 0.40 -1.2 486,657 - CSW01_02430 0.46 +1.2 486,738 - CSW01_02430 0.60 +1.2 486,908 - CSW01_02430 0.88 +0.0 486,987 + -0.2 487,028 - +0.1 487,048 + -0.1 487,061 + +0.0 487,061 + +0.6 487,061 + -0.6 487,061 + -0.9 487,061 + -0.1 487,061 + -0.2 487,069 - -0.1 487,069 - +0.0 487,069 - -1.0 487,099 + CSW01_02435 0.11 -1.0 487,129 + CSW01_02435 0.18 -0.3 487,129 + CSW01_02435 0.18 +1.0 487,187 + CSW01_02435 0.31 -0.0 487,187 + CSW01_02435 0.31 -0.7 487,197 + CSW01_02435 0.34 -0.2 487,230 + CSW01_02435 0.41 -0.1 487,268 + CSW01_02435 0.50 +0.4 487,343 - CSW01_02435 0.68 +0.7 487,353 + CSW01_02435 0.70 +0.8 487,375 + CSW01_02435 0.75 +1.3 487,420 - CSW01_02435 0.85 +0.6 487,422 + CSW01_02435 0.86 +0.1 487,441 + -0.5 487,620 + CSW01_02440 0.32 -0.4 487,628 - CSW01_02440 0.34 +0.1 487,636 - CSW01_02440 0.37 -1.1 487,640 + CSW01_02440 0.38 +0.3 487,719 - CSW01_02440 0.66 -1.7 487,732 - CSW01_02440 0.70 -0.6 487,769 + CSW01_02440 0.83 -0.9 487,782 + CSW01_02440 0.87 -0.5 487,796 + -0.5 487,797 - -0.3 487,797 - +0.2 487,801 + +0.9 487,824 - +0.0 487,832 + +1.7 487,837 + +0.0 487,837 + -0.5 487,845 - +0.2 487,887 - CSW01_02445 0.12 +0.2 487,887 - CSW01_02445 0.12 -0.7 487,898 - CSW01_02445 0.14 -1.8 487,904 + CSW01_02445 0.15 -0.5 487,912 - CSW01_02445 0.17 +0.3 487,912 - CSW01_02445 0.17 +0.1 487,912 - CSW01_02445 0.17 -0.9 487,912 - CSW01_02445 0.17 -0.6 488,008 - CSW01_02445 0.34 +0.2 488,010 + CSW01_02445 0.34 -1.9 488,010 + CSW01_02445 0.34 +0.2 488,059 + CSW01_02445 0.43 -0.3 488,059 + CSW01_02445 0.43 +0.5 488,067 - CSW01_02445 0.45 -0.5 488,093 + CSW01_02445 0.49 -0.8 488,098 + CSW01_02445 0.50 +1.2 488,108 + CSW01_02445 0.52 -0.1 488,108 + CSW01_02445 0.52 -0.8 488,111 - CSW01_02445 0.53 +0.4 488,111 - CSW01_02445 0.53 +0.7 488,141 - CSW01_02445 0.58 +0.7 488,197 - CSW01_02445 0.68 -0.4 488,210 + CSW01_02445 0.70 -0.3 488,218 - CSW01_02445 0.72 +2.0 488,227 + CSW01_02445 0.73 +0.7 488,324 + +1.1 488,324 + +0.3 488,332 - -0.2 488,506 - +0.4 488,509 + -0.2 488,516 + CSW01_02450 0.11 -0.6 488,584 + CSW01_02450 0.19 -2.0 488,592 - CSW01_02450 0.20 +0.1 488,595 + CSW01_02450 0.20 -1.2 488,595 + CSW01_02450 0.20 -0.6 488,603 - CSW01_02450 0.21 -0.5 488,663 + CSW01_02450 0.29 -0.5 488,755 - CSW01_02450 0.40 -1.2 488,777 + CSW01_02450 0.42 -0.6 488,777 - CSW01_02450 0.42 -1.7 488,777 - CSW01_02450 0.42 +0.2 488,808 - CSW01_02450 0.46 +0.4 488,813 + CSW01_02450 0.47 -0.1 488,813 + CSW01_02450 0.47 -1.0
Or see this region's nucleotide sequence