Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01490

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01485 and CSW01_01490 are separated by 138 nucleotidesCSW01_01490 and CSW01_01495 are separated by 23 nucleotides CSW01_01485: CSW01_01485 - transcriptional regulator, at 297,492 to 298,490 _01485 CSW01_01490: CSW01_01490 - Fis family transcriptional regulator, at 298,629 to 298,925 _01490 CSW01_01495: CSW01_01495 - tRNA dihydrouridine synthase DusB, at 298,949 to 299,944 _01495 Position (kb) 298 299Strain fitness (log2 ratio) -2 -1 0 1at 297.681 kb on + strand, within CSW01_01485at 297.689 kb on - strand, within CSW01_01485at 297.764 kb on - strand, within CSW01_01485at 297.764 kb on - strand, within CSW01_01485at 297.765 kb on + strand, within CSW01_01485at 297.811 kb on - strand, within CSW01_01485at 297.828 kb on - strand, within CSW01_01485at 297.860 kb on + strand, within CSW01_01485at 297.860 kb on + strand, within CSW01_01485at 297.910 kb on - strand, within CSW01_01485at 297.920 kb on + strand, within CSW01_01485at 298.037 kb on + strand, within CSW01_01485at 298.061 kb on + strand, within CSW01_01485at 298.061 kb on + strand, within CSW01_01485at 298.061 kb on + strand, within CSW01_01485at 298.061 kb on + strand, within CSW01_01485at 298.069 kb on - strand, within CSW01_01485at 298.069 kb on - strand, within CSW01_01485at 298.069 kb on - strand, within CSW01_01485at 298.115 kb on + strand, within CSW01_01485at 298.115 kb on + strand, within CSW01_01485at 298.123 kb on - strand, within CSW01_01485at 298.123 kb on - strand, within CSW01_01485at 298.123 kb on - strand, within CSW01_01485at 298.130 kb on + strand, within CSW01_01485at 298.224 kb on - strand, within CSW01_01485at 298.229 kb on + strand, within CSW01_01485at 298.237 kb on - strand, within CSW01_01485at 298.237 kb on - strand, within CSW01_01485at 298.353 kb on - strand, within CSW01_01485at 298.377 kb on - strand, within CSW01_01485at 298.405 kb on - strandat 298.550 kb on - strandat 298.551 kb on - strandat 298.553 kb on + strandat 298.563 kb on - strandat 298.635 kb on - strandat 298.664 kb on + strand, within CSW01_01490at 298.683 kb on + strand, within CSW01_01490at 298.727 kb on - strand, within CSW01_01490at 298.732 kb on - strand, within CSW01_01490at 298.795 kb on - strand, within CSW01_01490at 298.845 kb on - strand, within CSW01_01490at 298.931 kb on + strandat 298.934 kb on - strandat 298.939 kb on - strandat 298.939 kb on - strandat 299.092 kb on + strand, within CSW01_01495at 299.100 kb on - strand, within CSW01_01495at 299.106 kb on + strand, within CSW01_01495at 299.114 kb on - strand, within CSW01_01495at 299.114 kb on - strand, within CSW01_01495at 299.147 kb on + strand, within CSW01_01495at 299.155 kb on - strand, within CSW01_01495at 299.181 kb on + strand, within CSW01_01495at 299.183 kb on + strand, within CSW01_01495at 299.209 kb on - strand, within CSW01_01495at 299.231 kb on + strand, within CSW01_01495at 299.239 kb on - strand, within CSW01_01495at 299.276 kb on + strand, within CSW01_01495at 299.286 kb on - strand, within CSW01_01495at 299.310 kb on + strand, within CSW01_01495at 299.336 kb on + strand, within CSW01_01495at 299.344 kb on - strand, within CSW01_01495at 299.356 kb on + strand, within CSW01_01495at 299.364 kb on - strand, within CSW01_01495at 299.364 kb on - strand, within CSW01_01495at 299.366 kb on + strand, within CSW01_01495at 299.374 kb on - strand, within CSW01_01495at 299.374 kb on - strand, within CSW01_01495at 299.382 kb on + strand, within CSW01_01495at 299.390 kb on - strand, within CSW01_01495at 299.404 kb on - strand, within CSW01_01495at 299.438 kb on + strand, within CSW01_01495at 299.438 kb on + strand, within CSW01_01495at 299.446 kb on - strand, within CSW01_01495at 299.568 kb on - strand, within CSW01_01495at 299.568 kb on - strand, within CSW01_01495at 299.568 kb on - strand, within CSW01_01495at 299.568 kb on - strand, within CSW01_01495at 299.578 kb on - strand, within CSW01_01495at 299.586 kb on - strand, within CSW01_01495at 299.666 kb on - strand, within CSW01_01495at 299.681 kb on - strand, within CSW01_01495at 299.687 kb on - strand, within CSW01_01495at 299.704 kb on + strand, within CSW01_01495at 299.734 kb on - strand, within CSW01_01495at 299.750 kb on - strand, within CSW01_01495at 299.781 kb on + strand, within CSW01_01495at 299.789 kb on - strand, within CSW01_01495at 299.789 kb on - strand, within CSW01_01495at 299.920 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15B
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297,681 + CSW01_01485 0.19 +0.6
297,689 - CSW01_01485 0.20 +0.6
297,764 - CSW01_01485 0.27 -1.0
297,764 - CSW01_01485 0.27 +0.6
297,765 + CSW01_01485 0.27 +0.6
297,811 - CSW01_01485 0.32 -1.0
297,828 - CSW01_01485 0.34 +0.6
297,860 + CSW01_01485 0.37 +0.6
297,860 + CSW01_01485 0.37 +0.6
297,910 - CSW01_01485 0.42 +0.6
297,920 + CSW01_01485 0.43 -1.4
298,037 + CSW01_01485 0.55 +0.6
298,061 + CSW01_01485 0.57 +0.6
298,061 + CSW01_01485 0.57 +1.6
298,061 + CSW01_01485 0.57 +0.6
298,061 + CSW01_01485 0.57 +1.6
298,069 - CSW01_01485 0.58 -0.4
298,069 - CSW01_01485 0.58 +0.6
298,069 - CSW01_01485 0.58 +0.6
298,115 + CSW01_01485 0.62 -1.0
298,115 + CSW01_01485 0.62 +0.6
298,123 - CSW01_01485 0.63 -0.4
298,123 - CSW01_01485 0.63 +0.6
298,123 - CSW01_01485 0.63 +0.6
298,130 + CSW01_01485 0.64 -0.4
298,224 - CSW01_01485 0.73 -0.4
298,229 + CSW01_01485 0.74 +0.6
298,237 - CSW01_01485 0.75 -1.0
298,237 - CSW01_01485 0.75 +0.6
298,353 - CSW01_01485 0.86 +0.6
298,377 - CSW01_01485 0.89 +0.6
298,405 - +1.0
298,550 - +0.0
298,551 - -1.4
298,553 + -0.3
298,563 - +0.4
298,635 - +0.1
298,664 + CSW01_01490 0.12 +0.7
298,683 + CSW01_01490 0.18 -1.0
298,727 - CSW01_01490 0.33 -1.0
298,732 - CSW01_01490 0.35 -2.2
298,795 - CSW01_01490 0.56 -1.0
298,845 - CSW01_01490 0.73 -0.3
298,931 + -0.9
298,934 - +1.0
298,939 - +1.2
298,939 - -2.4
299,092 + CSW01_01495 0.14 +0.9
299,100 - CSW01_01495 0.15 +0.6
299,106 + CSW01_01495 0.16 +0.8
299,114 - CSW01_01495 0.17 +0.0
299,114 - CSW01_01495 0.17 -0.2
299,147 + CSW01_01495 0.20 +0.6
299,155 - CSW01_01495 0.21 +0.2
299,181 + CSW01_01495 0.23 +1.4
299,183 + CSW01_01495 0.23 +0.1
299,209 - CSW01_01495 0.26 +0.7
299,231 + CSW01_01495 0.28 -0.8
299,239 - CSW01_01495 0.29 +0.2
299,276 + CSW01_01495 0.33 +0.1
299,286 - CSW01_01495 0.34 -0.7
299,310 + CSW01_01495 0.36 -0.2
299,336 + CSW01_01495 0.39 +0.3
299,344 - CSW01_01495 0.40 +0.1
299,356 + CSW01_01495 0.41 -0.2
299,364 - CSW01_01495 0.42 +0.9
299,364 - CSW01_01495 0.42 +0.6
299,366 + CSW01_01495 0.42 +0.8
299,374 - CSW01_01495 0.43 -0.1
299,374 - CSW01_01495 0.43 +0.5
299,382 + CSW01_01495 0.43 +0.2
299,390 - CSW01_01495 0.44 +0.6
299,404 - CSW01_01495 0.46 +0.0
299,438 + CSW01_01495 0.49 -0.8
299,438 + CSW01_01495 0.49 +0.6
299,446 - CSW01_01495 0.50 -0.4
299,568 - CSW01_01495 0.62 -0.5
299,568 - CSW01_01495 0.62 +0.6
299,568 - CSW01_01495 0.62 -0.1
299,568 - CSW01_01495 0.62 -0.0
299,578 - CSW01_01495 0.63 +0.8
299,586 - CSW01_01495 0.64 +1.2
299,666 - CSW01_01495 0.72 -0.4
299,681 - CSW01_01495 0.73 +0.3
299,687 - CSW01_01495 0.74 +0.6
299,704 + CSW01_01495 0.76 +0.0
299,734 - CSW01_01495 0.79 +0.6
299,750 - CSW01_01495 0.80 +0.2
299,781 + CSW01_01495 0.84 +0.7
299,789 - CSW01_01495 0.84 +0.1
299,789 - CSW01_01495 0.84 +1.4
299,920 + -0.8

Or see this region's nucleotide sequence