Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01015

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01010 and CSW01_01015 are separated by 137 nucleotidesCSW01_01015 and CSW01_01020 are separated by 84 nucleotidesCSW01_01020 and CSW01_01025 are separated by 474 nucleotides CSW01_01010: CSW01_01010 - oligopeptidase A, at 192,035 to 194,077 _01010 CSW01_01015: CSW01_01015 - DNA helicase II, at 194,215 to 196,386 _01015 CSW01_01020: CSW01_01020 - hypothetical protein, at 196,471 to 196,656 _01020 CSW01_01025: CSW01_01025 - LysE family translocator, at 197,131 to 197,799 _01025 Position (kb) 194 195 196 197Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 193.275 kb on - strand, within CSW01_01010at 193.285 kb on + strand, within CSW01_01010at 193.304 kb on + strand, within CSW01_01010at 193.307 kb on - strand, within CSW01_01010at 193.312 kb on - strand, within CSW01_01010at 193.328 kb on + strand, within CSW01_01010at 193.336 kb on - strand, within CSW01_01010at 193.350 kb on + strand, within CSW01_01010at 193.352 kb on - strand, within CSW01_01010at 193.352 kb on - strand, within CSW01_01010at 193.358 kb on - strand, within CSW01_01010at 193.365 kb on - strand, within CSW01_01010at 193.392 kb on + strand, within CSW01_01010at 193.406 kb on + strand, within CSW01_01010at 193.406 kb on - strand, within CSW01_01010at 193.463 kb on - strand, within CSW01_01010at 193.468 kb on + strand, within CSW01_01010at 193.500 kb on + strand, within CSW01_01010at 193.513 kb on + strand, within CSW01_01010at 193.521 kb on - strand, within CSW01_01010at 193.546 kb on - strand, within CSW01_01010at 193.546 kb on - strand, within CSW01_01010at 193.592 kb on + strand, within CSW01_01010at 193.616 kb on - strand, within CSW01_01010at 193.618 kb on + strand, within CSW01_01010at 193.679 kb on - strand, within CSW01_01010at 193.707 kb on + strand, within CSW01_01010at 193.707 kb on + strand, within CSW01_01010at 193.715 kb on - strand, within CSW01_01010at 193.722 kb on + strand, within CSW01_01010at 193.723 kb on - strand, within CSW01_01010at 193.731 kb on + strand, within CSW01_01010at 193.731 kb on + strand, within CSW01_01010at 193.739 kb on - strand, within CSW01_01010at 193.739 kb on - strand, within CSW01_01010at 193.739 kb on - strand, within CSW01_01010at 193.739 kb on - strand, within CSW01_01010at 193.753 kb on + strand, within CSW01_01010at 193.790 kb on + strand, within CSW01_01010at 193.790 kb on + strand, within CSW01_01010at 193.798 kb on - strand, within CSW01_01010at 193.798 kb on - strand, within CSW01_01010at 193.827 kb on + strand, within CSW01_01010at 193.827 kb on + strand, within CSW01_01010at 193.827 kb on + strand, within CSW01_01010at 193.827 kb on + strand, within CSW01_01010at 193.835 kb on - strand, within CSW01_01010at 193.835 kb on - strand, within CSW01_01010at 193.862 kb on + strand, within CSW01_01010at 193.870 kb on - strand, within CSW01_01010at 193.889 kb on - strandat 193.949 kb on + strandat 193.957 kb on - strandat 193.957 kb on - strandat 193.957 kb on - strandat 193.979 kb on - strandat 193.997 kb on - strandat 194.008 kb on + strandat 194.008 kb on + strandat 194.008 kb on + strandat 194.008 kb on + strandat 194.016 kb on - strandat 194.016 kb on - strandat 194.016 kb on - strandat 194.048 kb on + strandat 194.053 kb on - strandat 194.056 kb on - strandat 194.058 kb on - strandat 194.087 kb on - strandat 194.101 kb on + strandat 194.135 kb on - strandat 194.138 kb on + strandat 194.157 kb on + strandat 194.243 kb on - strandat 194.249 kb on + strandat 194.259 kb on + strandat 194.317 kb on + strandat 194.317 kb on + strandat 194.340 kb on - strandat 194.342 kb on + strandat 194.352 kb on + strandat 194.392 kb on + strandat 194.443 kb on + strand, within CSW01_01015at 194.475 kb on - strand, within CSW01_01015at 194.500 kb on - strand, within CSW01_01015at 194.500 kb on - strand, within CSW01_01015at 194.500 kb on - strand, within CSW01_01015at 194.518 kb on + strand, within CSW01_01015at 194.528 kb on + strand, within CSW01_01015at 194.591 kb on - strand, within CSW01_01015at 194.591 kb on - strand, within CSW01_01015at 194.625 kb on - strand, within CSW01_01015at 194.694 kb on - strand, within CSW01_01015at 194.694 kb on - strand, within CSW01_01015at 194.699 kb on + strand, within CSW01_01015at 194.699 kb on + strand, within CSW01_01015at 194.707 kb on - strand, within CSW01_01015at 194.730 kb on + strand, within CSW01_01015at 194.730 kb on + strand, within CSW01_01015at 194.741 kb on - strand, within CSW01_01015at 194.744 kb on + strand, within CSW01_01015at 194.801 kb on + strand, within CSW01_01015at 194.801 kb on + strand, within CSW01_01015at 194.801 kb on + strand, within CSW01_01015at 194.801 kb on + strand, within CSW01_01015at 194.809 kb on - strand, within CSW01_01015at 194.809 kb on - strand, within CSW01_01015at 194.809 kb on - strand, within CSW01_01015at 194.904 kb on - strand, within CSW01_01015at 194.940 kb on + strand, within CSW01_01015at 195.135 kb on + strand, within CSW01_01015at 195.135 kb on + strand, within CSW01_01015at 195.135 kb on + strand, within CSW01_01015at 195.135 kb on + strand, within CSW01_01015at 195.135 kb on + strand, within CSW01_01015at 195.135 kb on + strand, within CSW01_01015at 195.135 kb on + strand, within CSW01_01015at 195.135 kb on + strand, within CSW01_01015at 195.135 kb on + strand, within CSW01_01015at 195.135 kb on + strand, within CSW01_01015at 195.135 kb on + strand, within CSW01_01015at 195.141 kb on + strand, within CSW01_01015at 195.143 kb on - strand, within CSW01_01015at 195.143 kb on - strand, within CSW01_01015at 195.143 kb on - strand, within CSW01_01015at 195.143 kb on - strand, within CSW01_01015at 195.143 kb on - strand, within CSW01_01015at 195.143 kb on - strand, within CSW01_01015at 195.241 kb on - strand, within CSW01_01015at 195.243 kb on + strand, within CSW01_01015at 195.246 kb on - strand, within CSW01_01015at 195.251 kb on - strand, within CSW01_01015at 195.338 kb on - strand, within CSW01_01015at 195.375 kb on + strand, within CSW01_01015at 195.397 kb on - strand, within CSW01_01015at 195.452 kb on - strand, within CSW01_01015at 195.481 kb on + strand, within CSW01_01015at 195.536 kb on + strand, within CSW01_01015at 195.561 kb on + strand, within CSW01_01015at 195.572 kb on - strand, within CSW01_01015at 195.604 kb on - strand, within CSW01_01015at 195.606 kb on + strand, within CSW01_01015at 195.614 kb on - strand, within CSW01_01015at 195.614 kb on - strand, within CSW01_01015at 195.614 kb on - strand, within CSW01_01015at 195.614 kb on - strand, within CSW01_01015at 195.636 kb on - strand, within CSW01_01015at 195.674 kb on + strand, within CSW01_01015at 195.682 kb on - strand, within CSW01_01015at 195.682 kb on - strand, within CSW01_01015at 195.797 kb on + strand, within CSW01_01015at 195.847 kb on + strand, within CSW01_01015at 195.847 kb on + strand, within CSW01_01015at 195.854 kb on - strand, within CSW01_01015at 195.855 kb on - strand, within CSW01_01015at 195.879 kb on + strand, within CSW01_01015at 195.886 kb on + strand, within CSW01_01015at 195.887 kb on - strand, within CSW01_01015at 195.904 kb on + strand, within CSW01_01015at 195.904 kb on + strand, within CSW01_01015at 195.904 kb on + strand, within CSW01_01015at 195.905 kb on - strand, within CSW01_01015at 195.912 kb on - strand, within CSW01_01015at 195.912 kb on - strand, within CSW01_01015at 195.935 kb on + strand, within CSW01_01015at 195.935 kb on + strand, within CSW01_01015at 195.943 kb on - strand, within CSW01_01015at 195.943 kb on - strand, within CSW01_01015at 195.943 kb on - strand, within CSW01_01015at 195.943 kb on - strand, within CSW01_01015at 195.943 kb on - strand, within CSW01_01015at 195.958 kb on + strand, within CSW01_01015at 196.008 kb on + strand, within CSW01_01015at 196.016 kb on - strand, within CSW01_01015at 196.018 kb on + strand, within CSW01_01015at 196.018 kb on + strand, within CSW01_01015at 196.018 kb on + strand, within CSW01_01015at 196.018 kb on + strand, within CSW01_01015at 196.018 kb on + strand, within CSW01_01015at 196.023 kb on + strand, within CSW01_01015at 196.023 kb on + strand, within CSW01_01015at 196.026 kb on - strand, within CSW01_01015at 196.026 kb on - strand, within CSW01_01015at 196.026 kb on - strand, within CSW01_01015at 196.099 kb on + strand, within CSW01_01015at 196.099 kb on + strand, within CSW01_01015at 196.107 kb on - strand, within CSW01_01015at 196.164 kb on - strand, within CSW01_01015at 196.178 kb on + strandat 196.178 kb on + strandat 196.181 kb on - strandat 196.186 kb on - strandat 196.186 kb on - strandat 196.354 kb on + strandat 196.362 kb on - strandat 196.380 kb on + strandat 196.380 kb on + strandat 196.380 kb on + strandat 196.388 kb on - strandat 196.388 kb on - strandat 196.390 kb on + strandat 196.499 kb on - strand, within CSW01_01020at 196.499 kb on - strand, within CSW01_01020at 196.499 kb on - strand, within CSW01_01020at 196.506 kb on + strand, within CSW01_01020at 196.548 kb on + strand, within CSW01_01020at 196.556 kb on - strand, within CSW01_01020at 196.605 kb on + strand, within CSW01_01020at 196.617 kb on + strand, within CSW01_01020at 196.639 kb on - strandat 196.745 kb on + strandat 196.750 kb on + strandat 196.758 kb on - strandat 196.761 kb on + strandat 196.761 kb on + strandat 196.761 kb on + strandat 196.761 kb on + strandat 196.761 kb on + strandat 196.761 kb on + strandat 196.761 kb on + strandat 196.761 kb on + strandat 196.761 kb on + strandat 196.761 kb on + strandat 196.761 kb on + strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.887 kb on + strandat 196.894 kb on + strandat 196.895 kb on - strandat 196.904 kb on + strandat 196.940 kb on + strandat 196.942 kb on - strandat 197.137 kb on - strandat 197.154 kb on - strandat 197.154 kb on - strandat 197.197 kb on + strandat 197.205 kb on - strand, within CSW01_01025at 197.205 kb on - strand, within CSW01_01025at 197.205 kb on - strand, within CSW01_01025at 197.205 kb on - strand, within CSW01_01025at 197.218 kb on - strand, within CSW01_01025at 197.219 kb on - strand, within CSW01_01025at 197.259 kb on + strand, within CSW01_01025at 197.304 kb on + strand, within CSW01_01025at 197.312 kb on - strand, within CSW01_01025at 197.312 kb on - strand, within CSW01_01025at 197.313 kb on - strand, within CSW01_01025at 197.338 kb on - strand, within CSW01_01025at 197.338 kb on - strand, within CSW01_01025at 197.349 kb on - strand, within CSW01_01025at 197.373 kb on - strand, within CSW01_01025at 197.380 kb on - strand, within CSW01_01025

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15B
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193,275 - CSW01_01010 0.61 -0.2
193,285 + CSW01_01010 0.61 -1.4
193,304 + CSW01_01010 0.62 +0.8
193,307 - CSW01_01010 0.62 +0.3
193,312 - CSW01_01010 0.63 +2.0
193,328 + CSW01_01010 0.63 -0.5
193,336 - CSW01_01010 0.64 -0.2
193,350 + CSW01_01010 0.64 -0.8
193,352 - CSW01_01010 0.64 -0.2
193,352 - CSW01_01010 0.64 +0.3
193,358 - CSW01_01010 0.65 -0.2
193,365 - CSW01_01010 0.65 +0.6
193,392 + CSW01_01010 0.66 +0.3
193,406 + CSW01_01010 0.67 -0.2
193,406 - CSW01_01010 0.67 -1.0
193,463 - CSW01_01010 0.70 +0.0
193,468 + CSW01_01010 0.70 +0.1
193,500 + CSW01_01010 0.72 +0.2
193,513 + CSW01_01010 0.72 +0.1
193,521 - CSW01_01010 0.73 +0.1
193,546 - CSW01_01010 0.74 +0.1
193,546 - CSW01_01010 0.74 -0.2
193,592 + CSW01_01010 0.76 +1.2
193,616 - CSW01_01010 0.77 -0.4
193,618 + CSW01_01010 0.77 +0.3
193,679 - CSW01_01010 0.80 -0.1
193,707 + CSW01_01010 0.82 +1.3
193,707 + CSW01_01010 0.82 -0.6
193,715 - CSW01_01010 0.82 -0.0
193,722 + CSW01_01010 0.83 +0.8
193,723 - CSW01_01010 0.83 +0.4
193,731 + CSW01_01010 0.83 -0.2
193,731 + CSW01_01010 0.83 +0.2
193,739 - CSW01_01010 0.83 -0.4
193,739 - CSW01_01010 0.83 -0.1
193,739 - CSW01_01010 0.83 +0.4
193,739 - CSW01_01010 0.83 +0.3
193,753 + CSW01_01010 0.84 -0.4
193,790 + CSW01_01010 0.86 -0.1
193,790 + CSW01_01010 0.86 -0.2
193,798 - CSW01_01010 0.86 +1.9
193,798 - CSW01_01010 0.86 -0.1
193,827 + CSW01_01010 0.88 +0.0
193,827 + CSW01_01010 0.88 -0.9
193,827 + CSW01_01010 0.88 +0.3
193,827 + CSW01_01010 0.88 -1.1
193,835 - CSW01_01010 0.88 +0.0
193,835 - CSW01_01010 0.88 -0.9
193,862 + CSW01_01010 0.89 +0.2
193,870 - CSW01_01010 0.90 +0.2
193,889 - -0.6
193,949 + +0.0
193,957 - -0.7
193,957 - -0.6
193,957 - -0.1
193,979 - +0.6
193,997 - -1.0
194,008 + +0.3
194,008 + -0.2
194,008 + -0.0
194,008 + -0.2
194,016 - -0.5
194,016 - -0.6
194,016 - -0.3
194,048 + -0.5
194,053 - -0.8
194,056 - -1.9
194,058 - +0.0
194,087 - -0.5
194,101 + -0.0
194,135 - -0.9
194,138 + -0.2
194,157 + +0.8
194,243 - -1.3
194,249 + -4.6
194,259 + -3.1
194,317 + +0.1
194,317 + +2.2
194,340 - -3.3
194,342 + -2.0
194,352 + -1.7
194,392 + -4.0
194,443 + CSW01_01015 0.10 -3.8
194,475 - CSW01_01015 0.12 -2.0
194,500 - CSW01_01015 0.13 -2.7
194,500 - CSW01_01015 0.13 -1.1
194,500 - CSW01_01015 0.13 -1.7
194,518 + CSW01_01015 0.14 +0.0
194,528 + CSW01_01015 0.14 -4.0
194,591 - CSW01_01015 0.17 -1.4
194,591 - CSW01_01015 0.17 -2.0
194,625 - CSW01_01015 0.19 -3.0
194,694 - CSW01_01015 0.22 -2.0
194,694 - CSW01_01015 0.22 -2.7
194,699 + CSW01_01015 0.22 -1.8
194,699 + CSW01_01015 0.22 -2.8
194,707 - CSW01_01015 0.23 -3.1
194,730 + CSW01_01015 0.24 -2.0
194,730 + CSW01_01015 0.24 -2.5
194,741 - CSW01_01015 0.24 -3.5
194,744 + CSW01_01015 0.24 -2.5
194,801 + CSW01_01015 0.27 -3.4
194,801 + CSW01_01015 0.27 -2.8
194,801 + CSW01_01015 0.27 +0.6
194,801 + CSW01_01015 0.27 -1.0
194,809 - CSW01_01015 0.27 -1.4
194,809 - CSW01_01015 0.27 -2.7
194,809 - CSW01_01015 0.27 -2.7
194,904 - CSW01_01015 0.32 -0.4
194,940 + CSW01_01015 0.33 -2.7
195,135 + CSW01_01015 0.42 -0.4
195,135 + CSW01_01015 0.42 -1.0
195,135 + CSW01_01015 0.42 -2.7
195,135 + CSW01_01015 0.42 +0.6
195,135 + CSW01_01015 0.42 -2.4
195,135 + CSW01_01015 0.42 +0.6
195,135 + CSW01_01015 0.42 -3.1
195,135 + CSW01_01015 0.42 -1.8
195,135 + CSW01_01015 0.42 -3.9
195,135 + CSW01_01015 0.42 -3.8
195,135 + CSW01_01015 0.42 -0.7
195,141 + CSW01_01015 0.43 -0.4
195,143 - CSW01_01015 0.43 -2.2
195,143 - CSW01_01015 0.43 -1.5
195,143 - CSW01_01015 0.43 -2.8
195,143 - CSW01_01015 0.43 -0.4
195,143 - CSW01_01015 0.43 -0.4
195,143 - CSW01_01015 0.43 -2.0
195,241 - CSW01_01015 0.47 -2.8
195,243 + CSW01_01015 0.47 -1.7
195,246 - CSW01_01015 0.47 -0.1
195,251 - CSW01_01015 0.48 -1.0
195,338 - CSW01_01015 0.52 -2.6
195,375 + CSW01_01015 0.53 -3.1
195,397 - CSW01_01015 0.54 -3.1
195,452 - CSW01_01015 0.57 -0.7
195,481 + CSW01_01015 0.58 -3.0
195,536 + CSW01_01015 0.61 -0.4
195,561 + CSW01_01015 0.62 -1.0
195,572 - CSW01_01015 0.62 -3.1
195,604 - CSW01_01015 0.64 -1.7
195,606 + CSW01_01015 0.64 -1.0
195,614 - CSW01_01015 0.64 -2.4
195,614 - CSW01_01015 0.64 -2.7
195,614 - CSW01_01015 0.64 -2.7
195,614 - CSW01_01015 0.64 -2.3
195,636 - CSW01_01015 0.65 -1.7
195,674 + CSW01_01015 0.67 -3.4
195,682 - CSW01_01015 0.68 -2.5
195,682 - CSW01_01015 0.68 -1.0
195,797 + CSW01_01015 0.73 -2.7
195,847 + CSW01_01015 0.75 -2.4
195,847 + CSW01_01015 0.75 -2.3
195,854 - CSW01_01015 0.75 -1.2
195,855 - CSW01_01015 0.76 +0.6
195,879 + CSW01_01015 0.77 -2.2
195,886 + CSW01_01015 0.77 -0.4
195,887 - CSW01_01015 0.77 -3.1
195,904 + CSW01_01015 0.78 -2.8
195,904 + CSW01_01015 0.78 -1.5
195,904 + CSW01_01015 0.78 -2.7
195,905 - CSW01_01015 0.78 -2.4
195,912 - CSW01_01015 0.78 -3.0
195,912 - CSW01_01015 0.78 -2.3
195,935 + CSW01_01015 0.79 -1.7
195,935 + CSW01_01015 0.79 -0.4
195,943 - CSW01_01015 0.80 -2.5
195,943 - CSW01_01015 0.80 -0.4
195,943 - CSW01_01015 0.80 -2.8
195,943 - CSW01_01015 0.80 -2.4
195,943 - CSW01_01015 0.80 -1.7
195,958 + CSW01_01015 0.80 +0.6
196,008 + CSW01_01015 0.83 -2.2
196,016 - CSW01_01015 0.83 -4.0
196,018 + CSW01_01015 0.83 -1.4
196,018 + CSW01_01015 0.83 -1.4
196,018 + CSW01_01015 0.83 -0.4
196,018 + CSW01_01015 0.83 -1.4
196,018 + CSW01_01015 0.83 -1.4
196,023 + CSW01_01015 0.83 -3.8
196,023 + CSW01_01015 0.83 -3.4
196,026 - CSW01_01015 0.83 -2.7
196,026 - CSW01_01015 0.83 -3.7
196,026 - CSW01_01015 0.83 -3.1
196,099 + CSW01_01015 0.87 -2.0
196,099 + CSW01_01015 0.87 -1.0
196,107 - CSW01_01015 0.87 -2.8
196,164 - CSW01_01015 0.90 -1.4
196,178 + +0.2
196,178 + -0.1
196,181 - -0.3
196,186 - +1.0
196,186 - -0.5
196,354 + +0.2
196,362 - -2.6
196,380 + -0.2
196,380 + +0.8
196,380 + -0.0
196,388 - +0.2
196,388 - -1.2
196,390 + +0.9
196,499 - CSW01_01020 0.15 +0.4
196,499 - CSW01_01020 0.15 -2.1
196,499 - CSW01_01020 0.15 -1.3
196,506 + CSW01_01020 0.19 +0.3
196,548 + CSW01_01020 0.41 -1.0
196,556 - CSW01_01020 0.46 +0.5
196,605 + CSW01_01020 0.72 +1.0
196,617 + CSW01_01020 0.78 -0.4
196,639 - +0.4
196,745 + +0.2
196,750 + +1.1
196,758 - +0.1
196,761 + -0.6
196,761 + -0.3
196,761 + +0.6
196,761 + +0.5
196,761 + +0.1
196,761 + +0.8
196,761 + +0.4
196,761 + -0.0
196,761 + -0.1
196,761 + +0.6
196,761 + -0.2
196,769 - -0.2
196,769 - +0.7
196,769 - -0.7
196,769 - +0.1
196,769 - +0.7
196,769 - +0.3
196,769 - -0.6
196,769 - +0.2
196,769 - +0.2
196,769 - -0.2
196,769 - +2.2
196,769 - +0.6
196,887 + -1.7
196,894 + -0.2
196,895 - +0.9
196,904 + -0.4
196,940 + -0.0
196,942 - -1.0
197,137 - +0.2
197,154 - -0.2
197,154 - -0.1
197,197 + +0.2
197,205 - CSW01_01025 0.11 -0.0
197,205 - CSW01_01025 0.11 -0.7
197,205 - CSW01_01025 0.11 +1.0
197,205 - CSW01_01025 0.11 +0.6
197,218 - CSW01_01025 0.13 +0.1
197,219 - CSW01_01025 0.13 -1.1
197,259 + CSW01_01025 0.19 +0.6
197,304 + CSW01_01025 0.26 +0.2
197,312 - CSW01_01025 0.27 -2.4
197,312 - CSW01_01025 0.27 -0.2
197,313 - CSW01_01025 0.27 -0.8
197,338 - CSW01_01025 0.31 +0.1
197,338 - CSW01_01025 0.31 +0.8
197,349 - CSW01_01025 0.33 +0.1
197,373 - CSW01_01025 0.36 +0.0
197,380 - CSW01_01025 0.37 -0.3

Or see this region's nucleotide sequence