Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00595

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00590 and CSW01_00595 are separated by 63 nucleotidesCSW01_00595 and CSW01_00600 overlap by 4 nucleotides CSW01_00590: CSW01_00590 - oxygen-independent coproporphyrinogen III oxidase, at 110,106 to 111,494 _00590 CSW01_00595: CSW01_00595 - heme biosynthesis protein HemY, at 111,558 to 112,754 _00595 CSW01_00600: CSW01_00600 - heme biosynthesis operon protein HemX, at 112,751 to 113,950 _00600 Position (kb) 111 112 113Strain fitness (log2 ratio) -2 -1 0 1 2at 110.575 kb on + strand, within CSW01_00590at 110.575 kb on + strand, within CSW01_00590at 110.575 kb on + strand, within CSW01_00590at 110.575 kb on + strand, within CSW01_00590at 110.582 kb on - strand, within CSW01_00590at 110.607 kb on + strand, within CSW01_00590at 110.607 kb on + strand, within CSW01_00590at 110.607 kb on + strand, within CSW01_00590at 110.607 kb on + strand, within CSW01_00590at 110.607 kb on + strand, within CSW01_00590at 110.615 kb on - strand, within CSW01_00590at 110.615 kb on - strand, within CSW01_00590at 110.615 kb on - strand, within CSW01_00590at 110.615 kb on - strand, within CSW01_00590at 110.616 kb on - strand, within CSW01_00590at 110.623 kb on + strand, within CSW01_00590at 110.650 kb on - strand, within CSW01_00590at 110.660 kb on - strand, within CSW01_00590at 110.663 kb on + strand, within CSW01_00590at 110.663 kb on + strand, within CSW01_00590at 110.671 kb on - strand, within CSW01_00590at 110.702 kb on + strand, within CSW01_00590at 110.710 kb on - strand, within CSW01_00590at 110.740 kb on + strand, within CSW01_00590at 110.748 kb on - strand, within CSW01_00590at 110.756 kb on + strand, within CSW01_00590at 110.764 kb on - strand, within CSW01_00590at 110.790 kb on - strand, within CSW01_00590at 110.790 kb on - strand, within CSW01_00590at 110.827 kb on - strand, within CSW01_00590at 110.835 kb on + strand, within CSW01_00590at 110.854 kb on + strand, within CSW01_00590at 110.884 kb on - strand, within CSW01_00590at 110.961 kb on + strand, within CSW01_00590at 110.969 kb on + strand, within CSW01_00590at 110.985 kb on - strand, within CSW01_00590at 111.013 kb on + strand, within CSW01_00590at 111.023 kb on + strand, within CSW01_00590at 111.023 kb on + strand, within CSW01_00590at 111.023 kb on + strand, within CSW01_00590at 111.028 kb on + strand, within CSW01_00590at 111.028 kb on + strand, within CSW01_00590at 111.028 kb on + strand, within CSW01_00590at 111.031 kb on - strand, within CSW01_00590at 111.031 kb on - strand, within CSW01_00590at 111.031 kb on - strand, within CSW01_00590at 111.036 kb on - strand, within CSW01_00590at 111.088 kb on + strand, within CSW01_00590at 111.129 kb on + strand, within CSW01_00590at 111.167 kb on + strand, within CSW01_00590at 111.167 kb on + strand, within CSW01_00590at 111.180 kb on + strand, within CSW01_00590at 111.209 kb on + strand, within CSW01_00590at 111.229 kb on + strand, within CSW01_00590at 111.292 kb on + strand, within CSW01_00590at 111.292 kb on + strand, within CSW01_00590at 111.300 kb on - strand, within CSW01_00590at 111.300 kb on - strand, within CSW01_00590at 111.300 kb on - strand, within CSW01_00590at 111.300 kb on - strand, within CSW01_00590at 111.300 kb on - strand, within CSW01_00590at 111.327 kb on + strand, within CSW01_00590at 111.338 kb on + strand, within CSW01_00590at 111.338 kb on + strand, within CSW01_00590at 111.347 kb on - strand, within CSW01_00590at 111.436 kb on - strandat 111.497 kb on - strandat 111.530 kb on + strandat 111.574 kb on + strandat 111.592 kb on - strandat 111.671 kb on - strandat 111.677 kb on + strandat 111.685 kb on - strand, within CSW01_00595at 111.724 kb on + strand, within CSW01_00595at 111.724 kb on + strand, within CSW01_00595at 111.743 kb on + strand, within CSW01_00595at 111.768 kb on - strand, within CSW01_00595at 111.856 kb on + strand, within CSW01_00595at 111.864 kb on - strand, within CSW01_00595at 111.866 kb on + strand, within CSW01_00595at 111.866 kb on + strand, within CSW01_00595at 111.866 kb on + strand, within CSW01_00595at 111.866 kb on + strand, within CSW01_00595at 111.874 kb on - strand, within CSW01_00595at 111.874 kb on - strand, within CSW01_00595at 111.874 kb on - strand, within CSW01_00595at 111.874 kb on - strand, within CSW01_00595at 111.874 kb on - strand, within CSW01_00595at 111.874 kb on - strand, within CSW01_00595at 111.874 kb on - strand, within CSW01_00595at 111.874 kb on - strand, within CSW01_00595at 111.907 kb on + strand, within CSW01_00595at 111.913 kb on + strand, within CSW01_00595at 111.915 kb on + strand, within CSW01_00595at 111.925 kb on + strand, within CSW01_00595at 111.925 kb on + strand, within CSW01_00595at 112.000 kb on + strand, within CSW01_00595at 112.036 kb on - strand, within CSW01_00595at 112.088 kb on + strand, within CSW01_00595at 112.098 kb on + strand, within CSW01_00595at 112.119 kb on - strand, within CSW01_00595at 112.119 kb on - strand, within CSW01_00595at 112.134 kb on + strand, within CSW01_00595at 112.137 kb on + strand, within CSW01_00595at 112.138 kb on - strand, within CSW01_00595at 112.142 kb on - strand, within CSW01_00595at 112.171 kb on - strand, within CSW01_00595at 112.173 kb on - strand, within CSW01_00595at 112.193 kb on - strand, within CSW01_00595at 112.203 kb on - strand, within CSW01_00595at 112.220 kb on + strand, within CSW01_00595at 112.227 kb on + strand, within CSW01_00595at 112.250 kb on + strand, within CSW01_00595at 112.328 kb on + strand, within CSW01_00595at 112.336 kb on - strand, within CSW01_00595at 112.336 kb on - strand, within CSW01_00595at 112.360 kb on + strand, within CSW01_00595at 112.401 kb on - strand, within CSW01_00595at 112.462 kb on + strand, within CSW01_00595at 112.470 kb on - strand, within CSW01_00595at 112.514 kb on + strand, within CSW01_00595at 112.522 kb on - strand, within CSW01_00595at 112.522 kb on - strand, within CSW01_00595at 112.523 kb on + strand, within CSW01_00595at 112.523 kb on + strand, within CSW01_00595at 112.523 kb on + strand, within CSW01_00595at 112.523 kb on + strand, within CSW01_00595at 112.523 kb on + strand, within CSW01_00595at 112.523 kb on + strand, within CSW01_00595at 112.531 kb on - strand, within CSW01_00595at 112.531 kb on - strand, within CSW01_00595at 112.531 kb on - strand, within CSW01_00595at 112.531 kb on - strand, within CSW01_00595at 112.531 kb on - strand, within CSW01_00595at 112.531 kb on - strand, within CSW01_00595at 112.577 kb on + strand, within CSW01_00595at 112.648 kb on - strandat 112.670 kb on + strandat 112.693 kb on - strandat 112.720 kb on - strandat 112.764 kb on + strandat 112.790 kb on + strandat 112.820 kb on + strandat 112.820 kb on + strandat 112.820 kb on + strandat 112.845 kb on + strandat 112.847 kb on + strandat 112.847 kb on + strandat 112.880 kb on + strand, within CSW01_00600at 112.880 kb on + strand, within CSW01_00600at 112.888 kb on - strand, within CSW01_00600at 112.898 kb on + strand, within CSW01_00600at 112.899 kb on - strand, within CSW01_00600at 112.899 kb on - strand, within CSW01_00600at 112.933 kb on + strand, within CSW01_00600at 112.933 kb on + strand, within CSW01_00600at 112.935 kb on + strand, within CSW01_00600at 112.943 kb on - strand, within CSW01_00600at 112.958 kb on - strand, within CSW01_00600at 112.963 kb on - strand, within CSW01_00600at 112.969 kb on + strand, within CSW01_00600at 112.989 kb on + strand, within CSW01_00600at 112.989 kb on + strand, within CSW01_00600at 112.997 kb on - strand, within CSW01_00600at 112.999 kb on - strand, within CSW01_00600at 113.006 kb on - strand, within CSW01_00600at 113.024 kb on - strand, within CSW01_00600at 113.024 kb on - strand, within CSW01_00600at 113.053 kb on + strand, within CSW01_00600at 113.053 kb on + strand, within CSW01_00600at 113.055 kb on + strand, within CSW01_00600at 113.063 kb on - strand, within CSW01_00600at 113.070 kb on - strand, within CSW01_00600at 113.108 kb on - strand, within CSW01_00600at 113.211 kb on + strand, within CSW01_00600at 113.211 kb on + strand, within CSW01_00600at 113.224 kb on - strand, within CSW01_00600at 113.237 kb on - strand, within CSW01_00600at 113.263 kb on + strand, within CSW01_00600at 113.263 kb on + strand, within CSW01_00600at 113.263 kb on + strand, within CSW01_00600at 113.263 kb on + strand, within CSW01_00600at 113.263 kb on + strand, within CSW01_00600at 113.263 kb on + strand, within CSW01_00600at 113.266 kb on - strand, within CSW01_00600at 113.266 kb on - strand, within CSW01_00600at 113.271 kb on - strand, within CSW01_00600at 113.271 kb on - strand, within CSW01_00600at 113.271 kb on - strand, within CSW01_00600at 113.310 kb on - strand, within CSW01_00600at 113.325 kb on + strand, within CSW01_00600at 113.325 kb on + strand, within CSW01_00600at 113.325 kb on + strand, within CSW01_00600at 113.333 kb on - strand, within CSW01_00600at 113.333 kb on - strand, within CSW01_00600at 113.333 kb on - strand, within CSW01_00600at 113.352 kb on - strand, within CSW01_00600at 113.359 kb on + strand, within CSW01_00600at 113.364 kb on + strand, within CSW01_00600at 113.364 kb on + strand, within CSW01_00600at 113.374 kb on + strand, within CSW01_00600at 113.374 kb on + strand, within CSW01_00600at 113.583 kb on - strand, within CSW01_00600at 113.640 kb on - strand, within CSW01_00600at 113.651 kb on - strand, within CSW01_00600at 113.664 kb on + strand, within CSW01_00600at 113.664 kb on + strand, within CSW01_00600at 113.672 kb on - strand, within CSW01_00600at 113.672 kb on - strand, within CSW01_00600at 113.711 kb on + strand, within CSW01_00600at 113.711 kb on + strand, within CSW01_00600at 113.719 kb on - strand, within CSW01_00600at 113.719 kb on - strand, within CSW01_00600at 113.746 kb on + strand, within CSW01_00600

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15B
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110,575 + CSW01_00590 0.34 +0.5
110,575 + CSW01_00590 0.34 -1.3
110,575 + CSW01_00590 0.34 +0.3
110,575 + CSW01_00590 0.34 -0.4
110,582 - CSW01_00590 0.34 -0.4
110,607 + CSW01_00590 0.36 -0.0
110,607 + CSW01_00590 0.36 +0.8
110,607 + CSW01_00590 0.36 -0.7
110,607 + CSW01_00590 0.36 -1.7
110,607 + CSW01_00590 0.36 +1.1
110,615 - CSW01_00590 0.37 -0.2
110,615 - CSW01_00590 0.37 -0.6
110,615 - CSW01_00590 0.37 -0.0
110,615 - CSW01_00590 0.37 +0.7
110,616 - CSW01_00590 0.37 -1.3
110,623 + CSW01_00590 0.37 -0.0
110,650 - CSW01_00590 0.39 +0.3
110,660 - CSW01_00590 0.40 -0.5
110,663 + CSW01_00590 0.40 +0.0
110,663 + CSW01_00590 0.40 +1.0
110,671 - CSW01_00590 0.41 -1.3
110,702 + CSW01_00590 0.43 +0.5
110,710 - CSW01_00590 0.43 -0.4
110,740 + CSW01_00590 0.46 -0.5
110,748 - CSW01_00590 0.46 +0.8
110,756 + CSW01_00590 0.47 -0.2
110,764 - CSW01_00590 0.47 +0.8
110,790 - CSW01_00590 0.49 +0.2
110,790 - CSW01_00590 0.49 +0.2
110,827 - CSW01_00590 0.52 +0.3
110,835 + CSW01_00590 0.52 -0.1
110,854 + CSW01_00590 0.54 +0.3
110,884 - CSW01_00590 0.56 -0.5
110,961 + CSW01_00590 0.62 +0.4
110,969 + CSW01_00590 0.62 +0.2
110,985 - CSW01_00590 0.63 -0.1
111,013 + CSW01_00590 0.65 -0.5
111,023 + CSW01_00590 0.66 +0.1
111,023 + CSW01_00590 0.66 +0.5
111,023 + CSW01_00590 0.66 +0.8
111,028 + CSW01_00590 0.66 +0.3
111,028 + CSW01_00590 0.66 -0.0
111,028 + CSW01_00590 0.66 -0.4
111,031 - CSW01_00590 0.67 +0.4
111,031 - CSW01_00590 0.67 -0.1
111,031 - CSW01_00590 0.67 -0.6
111,036 - CSW01_00590 0.67 +1.9
111,088 + CSW01_00590 0.71 +0.2
111,129 + CSW01_00590 0.74 +0.5
111,167 + CSW01_00590 0.76 -0.1
111,167 + CSW01_00590 0.76 +0.6
111,180 + CSW01_00590 0.77 -0.2
111,209 + CSW01_00590 0.79 -0.0
111,229 + CSW01_00590 0.81 -0.4
111,292 + CSW01_00590 0.85 -0.6
111,292 + CSW01_00590 0.85 -0.5
111,300 - CSW01_00590 0.86 +0.4
111,300 - CSW01_00590 0.86 -0.8
111,300 - CSW01_00590 0.86 +0.2
111,300 - CSW01_00590 0.86 +0.2
111,300 - CSW01_00590 0.86 -0.7
111,327 + CSW01_00590 0.88 -0.6
111,338 + CSW01_00590 0.89 +0.6
111,338 + CSW01_00590 0.89 +1.2
111,347 - CSW01_00590 0.89 -0.4
111,436 - +0.1
111,497 - +2.0
111,530 + +0.1
111,574 + +0.2
111,592 - -0.4
111,671 - +0.4
111,677 + +1.1
111,685 - CSW01_00595 0.11 +0.2
111,724 + CSW01_00595 0.14 +1.0
111,724 + CSW01_00595 0.14 -0.4
111,743 + CSW01_00595 0.15 +0.4
111,768 - CSW01_00595 0.18 -1.0
111,856 + CSW01_00595 0.25 -0.7
111,864 - CSW01_00595 0.26 -0.6
111,866 + CSW01_00595 0.26 -0.4
111,866 + CSW01_00595 0.26 +0.6
111,866 + CSW01_00595 0.26 +0.1
111,866 + CSW01_00595 0.26 +0.6
111,874 - CSW01_00595 0.26 +0.6
111,874 - CSW01_00595 0.26 +0.3
111,874 - CSW01_00595 0.26 -0.5
111,874 - CSW01_00595 0.26 +0.7
111,874 - CSW01_00595 0.26 +0.3
111,874 - CSW01_00595 0.26 +0.6
111,874 - CSW01_00595 0.26 -0.1
111,874 - CSW01_00595 0.26 -1.9
111,907 + CSW01_00595 0.29 +1.4
111,913 + CSW01_00595 0.30 +2.1
111,915 + CSW01_00595 0.30 +0.4
111,925 + CSW01_00595 0.31 +0.6
111,925 + CSW01_00595 0.31 -0.1
112,000 + CSW01_00595 0.37 +0.6
112,036 - CSW01_00595 0.40 -0.6
112,088 + CSW01_00595 0.44 +1.1
112,098 + CSW01_00595 0.45 +0.0
112,119 - CSW01_00595 0.47 -0.2
112,119 - CSW01_00595 0.47 +0.6
112,134 + CSW01_00595 0.48 +1.0
112,137 + CSW01_00595 0.48 -0.3
112,138 - CSW01_00595 0.48 +0.2
112,142 - CSW01_00595 0.49 +1.2
112,171 - CSW01_00595 0.51 +0.4
112,173 - CSW01_00595 0.51 +0.1
112,193 - CSW01_00595 0.53 -0.5
112,203 - CSW01_00595 0.54 +0.6
112,220 + CSW01_00595 0.55 +1.2
112,227 + CSW01_00595 0.56 +0.8
112,250 + CSW01_00595 0.58 +0.9
112,328 + CSW01_00595 0.64 +0.8
112,336 - CSW01_00595 0.65 +0.4
112,336 - CSW01_00595 0.65 -0.0
112,360 + CSW01_00595 0.67 +0.7
112,401 - CSW01_00595 0.70 -0.4
112,462 + CSW01_00595 0.76 -0.0
112,470 - CSW01_00595 0.76 -0.7
112,514 + CSW01_00595 0.80 +0.5
112,522 - CSW01_00595 0.81 -0.9
112,522 - CSW01_00595 0.81 -0.2
112,523 + CSW01_00595 0.81 +0.3
112,523 + CSW01_00595 0.81 -0.1
112,523 + CSW01_00595 0.81 +0.4
112,523 + CSW01_00595 0.81 +0.1
112,523 + CSW01_00595 0.81 +0.6
112,523 + CSW01_00595 0.81 +0.5
112,531 - CSW01_00595 0.81 +0.1
112,531 - CSW01_00595 0.81 -0.1
112,531 - CSW01_00595 0.81 +1.6
112,531 - CSW01_00595 0.81 +0.1
112,531 - CSW01_00595 0.81 -1.0
112,531 - CSW01_00595 0.81 +2.0
112,577 + CSW01_00595 0.85 -0.0
112,648 - +0.6
112,670 + +0.2
112,693 - -0.5
112,720 - +1.6
112,764 + +1.0
112,790 + -0.7
112,820 + +0.5
112,820 + -0.0
112,820 + +0.4
112,845 + -0.5
112,847 + +1.1
112,847 + +0.9
112,880 + CSW01_00600 0.11 +0.7
112,880 + CSW01_00600 0.11 +1.1
112,888 - CSW01_00600 0.11 -0.2
112,898 + CSW01_00600 0.12 +0.0
112,899 - CSW01_00600 0.12 +2.5
112,899 - CSW01_00600 0.12 -1.1
112,933 + CSW01_00600 0.15 -0.1
112,933 + CSW01_00600 0.15 -0.3
112,935 + CSW01_00600 0.15 -0.0
112,943 - CSW01_00600 0.16 +1.9
112,958 - CSW01_00600 0.17 +0.6
112,963 - CSW01_00600 0.18 -1.0
112,969 + CSW01_00600 0.18 +0.8
112,989 + CSW01_00600 0.20 +1.3
112,989 + CSW01_00600 0.20 -0.1
112,997 - CSW01_00600 0.20 -0.8
112,999 - CSW01_00600 0.21 +1.6
113,006 - CSW01_00600 0.21 +0.3
113,024 - CSW01_00600 0.23 +1.0
113,024 - CSW01_00600 0.23 -0.5
113,053 + CSW01_00600 0.25 -0.3
113,053 + CSW01_00600 0.25 -0.7
113,055 + CSW01_00600 0.25 +0.6
113,063 - CSW01_00600 0.26 +0.2
113,070 - CSW01_00600 0.27 +0.2
113,108 - CSW01_00600 0.30 -1.1
113,211 + CSW01_00600 0.38 -0.5
113,211 + CSW01_00600 0.38 -0.1
113,224 - CSW01_00600 0.39 +0.6
113,237 - CSW01_00600 0.41 +0.2
113,263 + CSW01_00600 0.43 -0.1
113,263 + CSW01_00600 0.43 +1.0
113,263 + CSW01_00600 0.43 +0.2
113,263 + CSW01_00600 0.43 -0.1
113,263 + CSW01_00600 0.43 +0.6
113,263 + CSW01_00600 0.43 +0.2
113,266 - CSW01_00600 0.43 +0.4
113,266 - CSW01_00600 0.43 +1.8
113,271 - CSW01_00600 0.43 +0.4
113,271 - CSW01_00600 0.43 -0.7
113,271 - CSW01_00600 0.43 +0.4
113,310 - CSW01_00600 0.47 +1.4
113,325 + CSW01_00600 0.48 +0.4
113,325 + CSW01_00600 0.48 +0.1
113,325 + CSW01_00600 0.48 -0.0
113,333 - CSW01_00600 0.48 +0.8
113,333 - CSW01_00600 0.48 +0.5
113,333 - CSW01_00600 0.48 -0.9
113,352 - CSW01_00600 0.50 +0.3
113,359 + CSW01_00600 0.51 -0.6
113,364 + CSW01_00600 0.51 -0.6
113,364 + CSW01_00600 0.51 -0.3
113,374 + CSW01_00600 0.52 -0.7
113,374 + CSW01_00600 0.52 -0.1
113,583 - CSW01_00600 0.69 +0.7
113,640 - CSW01_00600 0.74 -0.4
113,651 - CSW01_00600 0.75 -1.3
113,664 + CSW01_00600 0.76 +0.8
113,664 + CSW01_00600 0.76 -0.3
113,672 - CSW01_00600 0.77 +0.2
113,672 - CSW01_00600 0.77 +0.9
113,711 + CSW01_00600 0.80 +0.2
113,711 + CSW01_00600 0.80 -0.4
113,719 - CSW01_00600 0.81 -0.1
113,719 - CSW01_00600 0.81 +0.3
113,746 + CSW01_00600 0.83 +1.5

Or see this region's nucleotide sequence