Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00450

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00440 and CSW01_00445 are separated by 44 nucleotidesCSW01_00445 and CSW01_00450 are separated by 8 nucleotidesCSW01_00450 and CSW01_00455 overlap by 4 nucleotides CSW01_00440: CSW01_00440 - DNA recombination protein RmuC, at 80,087 to 81,619 _00440 CSW01_00445: CSW01_00445 - ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE, at 81,664 to 82,446 _00445 CSW01_00450: CSW01_00450 - SCP2 domain-containing protein, at 82,455 to 83,078 _00450 CSW01_00455: CSW01_00455 - ubiquinone biosynthesis protein UbiB, at 83,075 to 84,709 _00455 Position (kb) 82 83 84Strain fitness (log2 ratio) -1 0 1at 81.456 kb on - strand, within CSW01_00440at 81.489 kb on + strandat 81.497 kb on - strandat 81.497 kb on - strandat 81.532 kb on + strandat 81.559 kb on - strandat 81.592 kb on - strandat 82.526 kb on + strand, within CSW01_00450at 82.844 kb on + strand, within CSW01_00450at 82.872 kb on + strand, within CSW01_00450at 82.872 kb on + strand, within CSW01_00450at 83.089 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15B
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81,456 - CSW01_00440 0.89 +0.2
81,489 + -0.2
81,497 - +1.5
81,497 - -0.2
81,532 + +1.0
81,559 - +0.4
81,592 - +0.7
82,526 + CSW01_00450 0.11 -1.6
82,844 + CSW01_00450 0.62 -0.4
82,872 + CSW01_00450 0.67 +0.6
82,872 + CSW01_00450 0.67 -1.7
83,089 + +0.0

Or see this region's nucleotide sequence