Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00445

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00440 and CSW01_00445 are separated by 44 nucleotidesCSW01_00445 and CSW01_00450 are separated by 8 nucleotidesCSW01_00450 and CSW01_00455 overlap by 4 nucleotides CSW01_00440: CSW01_00440 - DNA recombination protein RmuC, at 80,087 to 81,619 _00440 CSW01_00445: CSW01_00445 - ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE, at 81,664 to 82,446 _00445 CSW01_00450: CSW01_00450 - SCP2 domain-containing protein, at 82,455 to 83,078 _00450 CSW01_00455: CSW01_00455 - ubiquinone biosynthesis protein UbiB, at 83,075 to 84,709 _00455 Position (kb) 81 82 83Strain fitness (log2 ratio) -2 -1 0 1 2at 80.665 kb on + strand, within CSW01_00440at 80.665 kb on + strand, within CSW01_00440at 80.686 kb on + strand, within CSW01_00440at 80.709 kb on + strand, within CSW01_00440at 80.709 kb on + strand, within CSW01_00440at 80.711 kb on + strand, within CSW01_00440at 80.711 kb on + strand, within CSW01_00440at 80.711 kb on + strand, within CSW01_00440at 80.719 kb on - strand, within CSW01_00440at 80.719 kb on - strand, within CSW01_00440at 80.720 kb on + strand, within CSW01_00440at 80.727 kb on + strand, within CSW01_00440at 80.741 kb on - strand, within CSW01_00440at 80.757 kb on + strand, within CSW01_00440at 80.757 kb on + strand, within CSW01_00440at 80.765 kb on - strand, within CSW01_00440at 80.765 kb on - strand, within CSW01_00440at 80.765 kb on - strand, within CSW01_00440at 80.765 kb on - strand, within CSW01_00440at 80.765 kb on - strand, within CSW01_00440at 80.854 kb on - strand, within CSW01_00440at 80.854 kb on - strand, within CSW01_00440at 80.868 kb on + strand, within CSW01_00440at 80.868 kb on + strand, within CSW01_00440at 80.868 kb on + strand, within CSW01_00440at 80.876 kb on - strand, within CSW01_00440at 80.900 kb on + strand, within CSW01_00440at 80.908 kb on - strand, within CSW01_00440at 80.926 kb on + strand, within CSW01_00440at 81.012 kb on - strand, within CSW01_00440at 81.042 kb on - strand, within CSW01_00440at 81.080 kb on - strand, within CSW01_00440at 81.090 kb on + strand, within CSW01_00440at 81.099 kb on + strand, within CSW01_00440at 81.124 kb on + strand, within CSW01_00440at 81.214 kb on + strand, within CSW01_00440at 81.214 kb on + strand, within CSW01_00440at 81.222 kb on - strand, within CSW01_00440at 81.233 kb on - strand, within CSW01_00440at 81.235 kb on + strand, within CSW01_00440at 81.260 kb on + strand, within CSW01_00440at 81.272 kb on + strand, within CSW01_00440at 81.282 kb on + strand, within CSW01_00440at 81.282 kb on + strand, within CSW01_00440at 81.300 kb on - strand, within CSW01_00440at 81.328 kb on + strand, within CSW01_00440at 81.328 kb on + strand, within CSW01_00440at 81.336 kb on - strand, within CSW01_00440at 81.360 kb on - strand, within CSW01_00440at 81.360 kb on - strand, within CSW01_00440at 81.375 kb on - strand, within CSW01_00440at 81.392 kb on + strand, within CSW01_00440at 81.392 kb on + strand, within CSW01_00440at 81.392 kb on + strand, within CSW01_00440at 81.392 kb on + strand, within CSW01_00440at 81.400 kb on - strand, within CSW01_00440at 81.409 kb on + strand, within CSW01_00440at 81.409 kb on + strand, within CSW01_00440at 81.409 kb on + strand, within CSW01_00440at 81.409 kb on + strand, within CSW01_00440at 81.409 kb on + strand, within CSW01_00440at 81.409 kb on + strand, within CSW01_00440at 81.414 kb on + strand, within CSW01_00440at 81.417 kb on - strand, within CSW01_00440at 81.417 kb on - strand, within CSW01_00440at 81.417 kb on - strand, within CSW01_00440at 81.437 kb on - strand, within CSW01_00440at 81.437 kb on - strand, within CSW01_00440at 81.448 kb on + strand, within CSW01_00440at 81.456 kb on - strand, within CSW01_00440at 81.489 kb on + strandat 81.497 kb on - strandat 81.497 kb on - strandat 81.532 kb on + strandat 81.559 kb on - strandat 81.592 kb on - strandat 82.526 kb on + strand, within CSW01_00450at 82.844 kb on + strand, within CSW01_00450at 82.872 kb on + strand, within CSW01_00450at 82.872 kb on + strand, within CSW01_00450at 83.089 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15B
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80,665 + CSW01_00440 0.38 +0.8
80,665 + CSW01_00440 0.38 +1.1
80,686 + CSW01_00440 0.39 +0.2
80,709 + CSW01_00440 0.41 -0.1
80,709 + CSW01_00440 0.41 -1.0
80,711 + CSW01_00440 0.41 -0.0
80,711 + CSW01_00440 0.41 +0.1
80,711 + CSW01_00440 0.41 +0.3
80,719 - CSW01_00440 0.41 -0.2
80,719 - CSW01_00440 0.41 -0.2
80,720 + CSW01_00440 0.41 -0.1
80,727 + CSW01_00440 0.42 +1.8
80,741 - CSW01_00440 0.43 -0.2
80,757 + CSW01_00440 0.44 -0.2
80,757 + CSW01_00440 0.44 +0.0
80,765 - CSW01_00440 0.44 +0.4
80,765 - CSW01_00440 0.44 -0.9
80,765 - CSW01_00440 0.44 +0.4
80,765 - CSW01_00440 0.44 -0.2
80,765 - CSW01_00440 0.44 +0.2
80,854 - CSW01_00440 0.50 +0.1
80,854 - CSW01_00440 0.50 +0.4
80,868 + CSW01_00440 0.51 -0.6
80,868 + CSW01_00440 0.51 +0.3
80,868 + CSW01_00440 0.51 +2.0
80,876 - CSW01_00440 0.51 -1.4
80,900 + CSW01_00440 0.53 -0.9
80,908 - CSW01_00440 0.54 -1.2
80,926 + CSW01_00440 0.55 +0.3
81,012 - CSW01_00440 0.60 +1.0
81,042 - CSW01_00440 0.62 +0.2
81,080 - CSW01_00440 0.65 +0.1
81,090 + CSW01_00440 0.65 -0.1
81,099 + CSW01_00440 0.66 +0.4
81,124 + CSW01_00440 0.68 +0.1
81,214 + CSW01_00440 0.74 +0.9
81,214 + CSW01_00440 0.74 -0.2
81,222 - CSW01_00440 0.74 +0.9
81,233 - CSW01_00440 0.75 -2.1
81,235 + CSW01_00440 0.75 +1.8
81,260 + CSW01_00440 0.77 -0.4
81,272 + CSW01_00440 0.77 -0.1
81,282 + CSW01_00440 0.78 +0.0
81,282 + CSW01_00440 0.78 -0.6
81,300 - CSW01_00440 0.79 -0.2
81,328 + CSW01_00440 0.81 -1.3
81,328 + CSW01_00440 0.81 +1.7
81,336 - CSW01_00440 0.81 -0.5
81,360 - CSW01_00440 0.83 +1.4
81,360 - CSW01_00440 0.83 -0.6
81,375 - CSW01_00440 0.84 +0.5
81,392 + CSW01_00440 0.85 +0.0
81,392 + CSW01_00440 0.85 -0.2
81,392 + CSW01_00440 0.85 -0.3
81,392 + CSW01_00440 0.85 +0.6
81,400 - CSW01_00440 0.86 -2.0
81,409 + CSW01_00440 0.86 +0.5
81,409 + CSW01_00440 0.86 +0.3
81,409 + CSW01_00440 0.86 +1.9
81,409 + CSW01_00440 0.86 -0.1
81,409 + CSW01_00440 0.86 -0.7
81,409 + CSW01_00440 0.86 -0.4
81,414 + CSW01_00440 0.87 -0.0
81,417 - CSW01_00440 0.87 +0.8
81,417 - CSW01_00440 0.87 +0.3
81,417 - CSW01_00440 0.87 +0.3
81,437 - CSW01_00440 0.88 +1.2
81,437 - CSW01_00440 0.88 +0.4
81,448 + CSW01_00440 0.89 +0.2
81,456 - CSW01_00440 0.89 +0.2
81,489 + -0.2
81,497 - +1.5
81,497 - -0.2
81,532 + +1.0
81,559 - +0.4
81,592 - +0.7
82,526 + CSW01_00450 0.11 -1.6
82,844 + CSW01_00450 0.62 -0.4
82,872 + CSW01_00450 0.67 +0.6
82,872 + CSW01_00450 0.67 -1.7
83,089 + +0.0

Or see this region's nucleotide sequence