Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00225

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00220 and CSW01_00225 are separated by 61 nucleotidesCSW01_00225 and CSW01_00230 are separated by 55 nucleotides CSW01_00220: CSW01_00220 - Trk system potassium transporter TrkA, at 40,560 to 41,936 _00220 CSW01_00225: CSW01_00225 - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 41,998 to 43,278 _00225 CSW01_00230: CSW01_00230 - methionyl-tRNA formyltransferase, at 43,334 to 44,281 _00230 Position (kb) 41 42 43 44Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 41.960 kb on + strandat 41.962 kb on + strandat 41.967 kb on + strandat 41.968 kb on - strandat 41.968 kb on - strandat 41.975 kb on - strandat 41.981 kb on + strandat 41.984 kb on - strandat 42.004 kb on - strandat 42.010 kb on + strandat 42.097 kb on + strandat 42.102 kb on + strandat 42.125 kb on + strandat 42.125 kb on + strandat 42.125 kb on + strandat 42.125 kb on + strandat 42.133 kb on - strand, within CSW01_00225at 42.133 kb on - strand, within CSW01_00225at 42.133 kb on - strand, within CSW01_00225at 42.133 kb on - strand, within CSW01_00225at 42.138 kb on - strand, within CSW01_00225at 42.142 kb on - strand, within CSW01_00225at 42.175 kb on + strand, within CSW01_00225at 42.191 kb on + strand, within CSW01_00225at 42.191 kb on + strand, within CSW01_00225at 42.199 kb on - strand, within CSW01_00225at 42.199 kb on - strand, within CSW01_00225at 42.199 kb on - strand, within CSW01_00225at 42.199 kb on - strand, within CSW01_00225at 42.199 kb on - strand, within CSW01_00225at 42.199 kb on - strand, within CSW01_00225at 42.337 kb on + strand, within CSW01_00225at 42.363 kb on + strand, within CSW01_00225at 42.391 kb on - strand, within CSW01_00225at 42.405 kb on + strand, within CSW01_00225at 42.405 kb on + strand, within CSW01_00225at 42.405 kb on + strand, within CSW01_00225at 42.405 kb on + strand, within CSW01_00225at 42.405 kb on + strand, within CSW01_00225at 42.413 kb on - strand, within CSW01_00225at 42.413 kb on - strand, within CSW01_00225at 42.413 kb on - strand, within CSW01_00225at 42.413 kb on - strand, within CSW01_00225at 42.413 kb on - strand, within CSW01_00225at 42.413 kb on - strand, within CSW01_00225at 42.413 kb on - strand, within CSW01_00225at 42.428 kb on - strand, within CSW01_00225at 42.434 kb on + strand, within CSW01_00225at 42.442 kb on - strand, within CSW01_00225at 42.483 kb on - strand, within CSW01_00225at 42.558 kb on + strand, within CSW01_00225at 42.558 kb on + strand, within CSW01_00225at 42.563 kb on + strand, within CSW01_00225at 42.566 kb on - strand, within CSW01_00225at 42.568 kb on + strand, within CSW01_00225at 42.576 kb on - strand, within CSW01_00225at 42.576 kb on - strand, within CSW01_00225at 42.577 kb on + strand, within CSW01_00225at 42.592 kb on + strand, within CSW01_00225at 42.592 kb on + strand, within CSW01_00225at 42.592 kb on + strand, within CSW01_00225at 42.600 kb on - strand, within CSW01_00225at 42.712 kb on + strand, within CSW01_00225at 42.719 kb on + strand, within CSW01_00225at 42.719 kb on + strand, within CSW01_00225at 42.727 kb on - strand, within CSW01_00225at 42.727 kb on - strand, within CSW01_00225at 42.727 kb on - strand, within CSW01_00225at 42.727 kb on - strand, within CSW01_00225at 42.744 kb on - strand, within CSW01_00225at 42.810 kb on + strand, within CSW01_00225at 42.810 kb on + strand, within CSW01_00225at 42.810 kb on + strand, within CSW01_00225at 42.810 kb on + strand, within CSW01_00225at 42.810 kb on + strand, within CSW01_00225at 42.810 kb on + strand, within CSW01_00225at 42.810 kb on + strand, within CSW01_00225at 42.810 kb on + strand, within CSW01_00225at 42.815 kb on + strand, within CSW01_00225at 42.815 kb on + strand, within CSW01_00225at 42.815 kb on + strand, within CSW01_00225at 42.815 kb on + strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.821 kb on - strand, within CSW01_00225at 42.823 kb on - strand, within CSW01_00225at 42.865 kb on - strand, within CSW01_00225at 42.900 kb on - strand, within CSW01_00225at 42.917 kb on + strand, within CSW01_00225at 42.917 kb on + strand, within CSW01_00225at 42.919 kb on - strand, within CSW01_00225at 42.922 kb on + strand, within CSW01_00225at 42.951 kb on + strand, within CSW01_00225at 42.951 kb on + strand, within CSW01_00225at 42.951 kb on + strand, within CSW01_00225at 42.951 kb on + strand, within CSW01_00225at 42.951 kb on + strand, within CSW01_00225at 42.951 kb on + strand, within CSW01_00225at 42.954 kb on - strand, within CSW01_00225at 42.959 kb on - strand, within CSW01_00225at 42.959 kb on - strand, within CSW01_00225at 42.959 kb on - strand, within CSW01_00225at 42.959 kb on - strand, within CSW01_00225at 42.970 kb on + strand, within CSW01_00225at 42.985 kb on - strand, within CSW01_00225at 43.033 kb on + strand, within CSW01_00225at 43.040 kb on - strand, within CSW01_00225at 43.132 kb on + strand, within CSW01_00225at 43.208 kb on + strandat 43.208 kb on + strandat 43.208 kb on + strandat 43.208 kb on + strandat 43.216 kb on - strandat 43.216 kb on - strandat 43.216 kb on - strandat 43.233 kb on - strandat 43.319 kb on + strandat 43.319 kb on + strandat 43.319 kb on + strandat 43.362 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15B
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41,960 + +0.4
41,962 + -1.6
41,967 + +0.1
41,968 - +0.2
41,968 - -1.0
41,975 - +0.2
41,981 + +0.5
41,984 - +0.6
42,004 - +0.2
42,010 + -0.7
42,097 + -1.3
42,102 + +0.6
42,125 + -0.6
42,125 + -0.5
42,125 + -0.2
42,125 + +0.4
42,133 - CSW01_00225 0.11 -0.0
42,133 - CSW01_00225 0.11 +1.8
42,133 - CSW01_00225 0.11 -0.4
42,133 - CSW01_00225 0.11 +0.7
42,138 - CSW01_00225 0.11 -0.1
42,142 - CSW01_00225 0.11 +0.1
42,175 + CSW01_00225 0.14 -2.8
42,191 + CSW01_00225 0.15 -0.6
42,191 + CSW01_00225 0.15 -0.7
42,199 - CSW01_00225 0.16 +0.1
42,199 - CSW01_00225 0.16 -1.0
42,199 - CSW01_00225 0.16 +0.8
42,199 - CSW01_00225 0.16 -0.2
42,199 - CSW01_00225 0.16 -0.5
42,199 - CSW01_00225 0.16 +2.2
42,337 + CSW01_00225 0.26 -0.8
42,363 + CSW01_00225 0.28 -0.3
42,391 - CSW01_00225 0.31 +0.5
42,405 + CSW01_00225 0.32 -1.0
42,405 + CSW01_00225 0.32 -0.4
42,405 + CSW01_00225 0.32 -0.6
42,405 + CSW01_00225 0.32 -0.2
42,405 + CSW01_00225 0.32 -0.5
42,413 - CSW01_00225 0.32 -0.1
42,413 - CSW01_00225 0.32 -0.0
42,413 - CSW01_00225 0.32 +0.4
42,413 - CSW01_00225 0.32 +0.4
42,413 - CSW01_00225 0.32 +0.8
42,413 - CSW01_00225 0.32 -0.7
42,413 - CSW01_00225 0.32 +0.1
42,428 - CSW01_00225 0.34 -0.3
42,434 + CSW01_00225 0.34 -0.3
42,442 - CSW01_00225 0.35 -0.1
42,483 - CSW01_00225 0.38 +0.1
42,558 + CSW01_00225 0.44 +0.4
42,558 + CSW01_00225 0.44 +0.8
42,563 + CSW01_00225 0.44 -0.6
42,566 - CSW01_00225 0.44 +0.8
42,568 + CSW01_00225 0.44 -1.7
42,576 - CSW01_00225 0.45 -0.1
42,576 - CSW01_00225 0.45 +0.4
42,577 + CSW01_00225 0.45 +0.2
42,592 + CSW01_00225 0.46 +0.1
42,592 + CSW01_00225 0.46 -1.3
42,592 + CSW01_00225 0.46 +0.4
42,600 - CSW01_00225 0.47 -0.2
42,712 + CSW01_00225 0.56 -0.4
42,719 + CSW01_00225 0.56 -1.0
42,719 + CSW01_00225 0.56 -1.2
42,727 - CSW01_00225 0.57 +1.5
42,727 - CSW01_00225 0.57 +0.0
42,727 - CSW01_00225 0.57 +0.3
42,727 - CSW01_00225 0.57 -0.6
42,744 - CSW01_00225 0.58 +1.0
42,810 + CSW01_00225 0.63 -0.7
42,810 + CSW01_00225 0.63 +0.6
42,810 + CSW01_00225 0.63 -0.1
42,810 + CSW01_00225 0.63 +0.8
42,810 + CSW01_00225 0.63 -0.0
42,810 + CSW01_00225 0.63 +0.1
42,810 + CSW01_00225 0.63 -1.1
42,810 + CSW01_00225 0.63 +0.3
42,815 + CSW01_00225 0.64 +1.3
42,815 + CSW01_00225 0.64 +0.4
42,815 + CSW01_00225 0.64 +0.3
42,815 + CSW01_00225 0.64 -0.4
42,818 - CSW01_00225 0.64 +0.2
42,818 - CSW01_00225 0.64 -1.7
42,818 - CSW01_00225 0.64 -0.2
42,818 - CSW01_00225 0.64 -0.2
42,818 - CSW01_00225 0.64 +0.1
42,818 - CSW01_00225 0.64 -0.4
42,818 - CSW01_00225 0.64 -1.3
42,818 - CSW01_00225 0.64 -0.5
42,818 - CSW01_00225 0.64 +0.6
42,818 - CSW01_00225 0.64 -0.1
42,818 - CSW01_00225 0.64 +0.2
42,818 - CSW01_00225 0.64 -0.7
42,818 - CSW01_00225 0.64 -0.9
42,818 - CSW01_00225 0.64 +0.6
42,821 - CSW01_00225 0.64 -0.2
42,823 - CSW01_00225 0.64 +1.2
42,865 - CSW01_00225 0.68 -0.9
42,900 - CSW01_00225 0.70 +0.1
42,917 + CSW01_00225 0.72 +0.5
42,917 + CSW01_00225 0.72 -0.2
42,919 - CSW01_00225 0.72 -0.6
42,922 + CSW01_00225 0.72 -0.1
42,951 + CSW01_00225 0.74 -0.5
42,951 + CSW01_00225 0.74 +0.8
42,951 + CSW01_00225 0.74 +0.0
42,951 + CSW01_00225 0.74 +0.1
42,951 + CSW01_00225 0.74 -0.2
42,951 + CSW01_00225 0.74 +0.6
42,954 - CSW01_00225 0.75 +0.2
42,959 - CSW01_00225 0.75 +0.9
42,959 - CSW01_00225 0.75 -0.5
42,959 - CSW01_00225 0.75 -0.6
42,959 - CSW01_00225 0.75 -0.6
42,970 + CSW01_00225 0.76 -0.2
42,985 - CSW01_00225 0.77 +0.6
43,033 + CSW01_00225 0.81 +0.4
43,040 - CSW01_00225 0.81 +0.4
43,132 + CSW01_00225 0.89 -1.2
43,208 + -0.2
43,208 + -1.8
43,208 + +0.2
43,208 + +0.2
43,216 - +0.0
43,216 - -0.0
43,216 - +0.5
43,233 - +0.8
43,319 + +0.9
43,319 + -0.4
43,319 + +1.6
43,362 - -1.7

Or see this region's nucleotide sequence