Strain Fitness in Shewanella loihica PV-4 around Shew_3277

Experiment: Motility M3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3276 and alr are separated by 4 nucleotidesalr and Shew_3278 are separated by 109 nucleotides Shew_3276: Shew_3276 - hypothetical protein (RefSeq), at 3,918,735 to 3,920,024 _3276 Shew_3277: alr - alanine racemase (RefSeq), at 3,920,029 to 3,921,105 alr Shew_3278: Shew_3278 - replicative DNA helicase (RefSeq), at 3,921,215 to 3,922,621 _3278 Position (kb) 3920 3921 3922Strain fitness (log2 ratio) -1 0 1 2at 3919.421 kb on + strand, within Shew_3276at 3919.421 kb on + strand, within Shew_3276at 3919.421 kb on + strand, within Shew_3276at 3919.421 kb on + strand, within Shew_3276at 3919.421 kb on + strand, within Shew_3276at 3919.429 kb on - strand, within Shew_3276at 3919.436 kb on + strand, within Shew_3276at 3919.436 kb on + strand, within Shew_3276at 3919.436 kb on + strand, within Shew_3276at 3919.436 kb on + strand, within Shew_3276at 3919.444 kb on - strand, within Shew_3276at 3919.467 kb on + strand, within Shew_3276at 3919.475 kb on - strand, within Shew_3276at 3919.475 kb on - strand, within Shew_3276at 3919.509 kb on - strand, within Shew_3276at 3919.659 kb on - strand, within Shew_3276at 3919.907 kb on + strandat 3919.917 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility M3
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3,919,421 + Shew_3276 0.53 +2.4
3,919,421 + Shew_3276 0.53 -0.1
3,919,421 + Shew_3276 0.53 -0.6
3,919,421 + Shew_3276 0.53 -0.4
3,919,421 + Shew_3276 0.53 -0.8
3,919,429 - Shew_3276 0.54 -0.3
3,919,436 + Shew_3276 0.54 +0.1
3,919,436 + Shew_3276 0.54 +0.3
3,919,436 + Shew_3276 0.54 -1.4
3,919,436 + Shew_3276 0.54 -0.2
3,919,444 - Shew_3276 0.55 -1.0
3,919,467 + Shew_3276 0.57 -1.7
3,919,475 - Shew_3276 0.57 -0.5
3,919,475 - Shew_3276 0.57 +0.5
3,919,509 - Shew_3276 0.60 -0.2
3,919,659 - Shew_3276 0.72 -0.6
3,919,907 + -0.2
3,919,917 + -0.4

Or see this region's nucleotide sequence