Experiment: Motility M3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3201 and Shew_3202 overlap by 8 nucleotides Shew_3202 and Shew_3203 overlap by 4 nucleotides
Shew_3201: Shew_3201 - ABC transporter-related protein (RefSeq), at 3,817,906 to 3,818,571
_3201
Shew_3202: Shew_3202 - hypothetical protein (RefSeq), at 3,818,564 to 3,821,116
_3202
Shew_3203: Shew_3203 - hypothetical protein (RefSeq), at 3,821,113 to 3,822,351
_3203
Position (kb)
3818
3819
3820
3821
3822 Strain fitness (log2 ratio)
-2
-1
0
1 at 3818.082 kb on + strand, within Shew_3201 at 3818.244 kb on + strand, within Shew_3201 at 3818.425 kb on - strand, within Shew_3201 at 3818.443 kb on - strand, within Shew_3201 at 3818.551 kb on - strand at 3818.576 kb on + strand at 3818.873 kb on - strand, within Shew_3202 at 3818.900 kb on + strand, within Shew_3202 at 3818.900 kb on + strand, within Shew_3202 at 3818.908 kb on - strand, within Shew_3202 at 3818.908 kb on - strand, within Shew_3202 at 3818.908 kb on - strand, within Shew_3202 at 3818.908 kb on - strand, within Shew_3202 at 3819.043 kb on - strand, within Shew_3202 at 3819.120 kb on - strand, within Shew_3202 at 3819.278 kb on - strand, within Shew_3202 at 3819.522 kb on + strand, within Shew_3202 at 3819.628 kb on + strand, within Shew_3202 at 3819.677 kb on + strand, within Shew_3202 at 3819.758 kb on + strand, within Shew_3202 at 3819.758 kb on + strand, within Shew_3202 at 3819.851 kb on - strand, within Shew_3202 at 3819.911 kb on - strand, within Shew_3202 at 3819.986 kb on - strand, within Shew_3202 at 3820.011 kb on - strand, within Shew_3202 at 3820.022 kb on - strand, within Shew_3202 at 3820.082 kb on + strand, within Shew_3202 at 3820.254 kb on - strand, within Shew_3202 at 3820.441 kb on + strand, within Shew_3202 at 3820.583 kb on - strand, within Shew_3202 at 3820.886 kb on + strand at 3820.891 kb on - strand at 3820.912 kb on + strand at 3821.174 kb on + strand at 3821.274 kb on - strand, within Shew_3203 at 3821.435 kb on + strand, within Shew_3203 at 3821.458 kb on - strand, within Shew_3203 at 3821.574 kb on + strand, within Shew_3203 at 3821.574 kb on + strand, within Shew_3203 at 3821.686 kb on + strand, within Shew_3203 at 3821.689 kb on - strand, within Shew_3203 at 3821.820 kb on - strand, within Shew_3203 at 3822.047 kb on + strand, within Shew_3203 at 3822.055 kb on - strand, within Shew_3203
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M3 remove 3,818,082 + Shew_3201 0.26 +1.3 3,818,244 + Shew_3201 0.51 -1.7 3,818,425 - Shew_3201 0.78 -0.4 3,818,443 - Shew_3201 0.81 -0.6 3,818,551 - +0.8 3,818,576 + -0.2 3,818,873 - Shew_3202 0.12 -2.2 3,818,900 + Shew_3202 0.13 -0.2 3,818,900 + Shew_3202 0.13 +0.0 3,818,908 - Shew_3202 0.13 +0.3 3,818,908 - Shew_3202 0.13 -0.1 3,818,908 - Shew_3202 0.13 -0.8 3,818,908 - Shew_3202 0.13 -1.1 3,819,043 - Shew_3202 0.19 +0.4 3,819,120 - Shew_3202 0.22 +0.4 3,819,278 - Shew_3202 0.28 +1.1 3,819,522 + Shew_3202 0.38 -0.2 3,819,628 + Shew_3202 0.42 -1.0 3,819,677 + Shew_3202 0.44 -0.3 3,819,758 + Shew_3202 0.47 +0.3 3,819,758 + Shew_3202 0.47 +0.0 3,819,851 - Shew_3202 0.50 -0.4 3,819,911 - Shew_3202 0.53 +0.0 3,819,986 - Shew_3202 0.56 +0.6 3,820,011 - Shew_3202 0.57 -2.3 3,820,022 - Shew_3202 0.57 +0.6 3,820,082 + Shew_3202 0.59 +0.1 3,820,254 - Shew_3202 0.66 +0.2 3,820,441 + Shew_3202 0.74 -0.3 3,820,583 - Shew_3202 0.79 +0.3 3,820,886 + +0.2 3,820,891 - -0.3 3,820,912 + -0.2 3,821,174 + +0.3 3,821,274 - Shew_3203 0.13 -1.0 3,821,435 + Shew_3203 0.26 +1.4 3,821,458 - Shew_3203 0.28 +0.6 3,821,574 + Shew_3203 0.37 -0.1 3,821,574 + Shew_3203 0.37 -0.4 3,821,686 + Shew_3203 0.46 +0.6 3,821,689 - Shew_3203 0.46 +0.9 3,821,820 - Shew_3203 0.57 -1.3 3,822,047 + Shew_3203 0.75 +0.6 3,822,055 - Shew_3203 0.76 -1.2
Or see this region's nucleotide sequence