Experiment: Motility M3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3115 and Shew_3116 are separated by 536 nucleotides Shew_3116 and Shew_3117 are separated by 1 nucleotides Shew_3117 and Shew_3118 are separated by 0 nucleotides
Shew_3115: Shew_3115 - sodium:dicarboxylate symporter (RefSeq), at 3,698,873 to 3,700,186
_3115
Shew_3116: Shew_3116 - predicted chromosome partitioning protein (with smc-like Shew_3118) (from data) , at 3,700,723 to 3,701,943
_3116
Shew_3117: Shew_3117 - predicted chromosome partitioning protein (with smc-like Shew_3118) (from data) , at 3,701,945 to 3,702,598
_3117
Shew_3118: Shew_3118 - smc-like chromosome partitioning protein (DUF3584) (from data) , at 3,702,599 to 3,706,270
_3118
Position (kb)
3700
3701
3702 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3699.936 kb on + strand, within Shew_3115 at 3700.714 kb on + strand at 3700.899 kb on - strand, within Shew_3116 at 3701.045 kb on - strand, within Shew_3116 at 3701.109 kb on - strand, within Shew_3116 at 3701.302 kb on + strand, within Shew_3116 at 3701.310 kb on - strand, within Shew_3116 at 3701.456 kb on + strand, within Shew_3116 at 3701.891 kb on + strand at 3701.925 kb on + strand at 3702.462 kb on + strand, within Shew_3117 at 3702.933 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M3 remove 3,699,936 + Shew_3115 0.81 -1.2 3,700,714 + -1.3 3,700,899 - Shew_3116 0.14 -4.0 3,701,045 - Shew_3116 0.26 -0.8 3,701,109 - Shew_3116 0.32 -3.9 3,701,302 + Shew_3116 0.47 -1.4 3,701,310 - Shew_3116 0.48 -2.2 3,701,456 + Shew_3116 0.60 -1.2 3,701,891 + -2.0 3,701,925 + -2.3 3,702,462 + Shew_3117 0.79 -2.2 3,702,933 + -2.5
Or see this region's nucleotide sequence