Experiment: Motility M3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2363 and Shew_2364 are separated by 26 nucleotides Shew_2364 and Shew_2365 are separated by 106 nucleotides Shew_2365 and Shew_2366 are separated by 99 nucleotides
Shew_2363: Shew_2363 - proline racemase (RefSeq), at 2,763,929 to 2,764,930
_2363
Shew_2364: Shew_2364 - aldehyde dehydrogenase (RefSeq), at 2,764,957 to 2,766,522
_2364
Shew_2365: Shew_2365 - GntR family transcriptional regulator (RefSeq), at 2,766,629 to 2,767,300
_2365
Shew_2366: Shew_2366 - 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq), at 2,767,400 to 2,768,467
_2366
Position (kb)
2764
2765
2766
2767 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2764.270 kb on + strand, within Shew_2363 at 2764.409 kb on - strand, within Shew_2363 at 2764.473 kb on + strand, within Shew_2363 at 2764.547 kb on + strand, within Shew_2363 at 2764.555 kb on - strand, within Shew_2363 at 2764.894 kb on - strand at 2765.047 kb on - strand at 2765.199 kb on + strand, within Shew_2364 at 2765.630 kb on - strand, within Shew_2364 at 2765.868 kb on + strand, within Shew_2364 at 2765.871 kb on - strand, within Shew_2364 at 2765.986 kb on - strand, within Shew_2364 at 2766.051 kb on - strand, within Shew_2364 at 2766.054 kb on + strand, within Shew_2364 at 2766.054 kb on + strand, within Shew_2364 at 2766.290 kb on + strand, within Shew_2364 at 2766.298 kb on - strand, within Shew_2364 at 2766.303 kb on - strand, within Shew_2364 at 2766.504 kb on - strand at 2766.783 kb on + strand, within Shew_2365 at 2767.485 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M3 remove 2,764,270 + Shew_2363 0.34 -2.6 2,764,409 - Shew_2363 0.48 +0.4 2,764,473 + Shew_2363 0.54 -0.5 2,764,547 + Shew_2363 0.62 +0.7 2,764,555 - Shew_2363 0.62 -0.0 2,764,894 - -0.0 2,765,047 - -0.4 2,765,199 + Shew_2364 0.15 +0.2 2,765,630 - Shew_2364 0.43 +0.3 2,765,868 + Shew_2364 0.58 -1.1 2,765,871 - Shew_2364 0.58 +1.2 2,765,986 - Shew_2364 0.66 +0.4 2,766,051 - Shew_2364 0.70 -1.2 2,766,054 + Shew_2364 0.70 -0.0 2,766,054 + Shew_2364 0.70 +0.1 2,766,290 + Shew_2364 0.85 +0.3 2,766,298 - Shew_2364 0.86 -0.4 2,766,303 - Shew_2364 0.86 +0.2 2,766,504 - +1.1 2,766,783 + Shew_2365 0.23 -4.2 2,767,485 + -4.8
Or see this region's nucleotide sequence