Strain Fitness in Shewanella loihica PV-4 around Shew_2299

Experiment: Motility M3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2298 and Shew_2299 are separated by 127 nucleotidesShew_2299 and Shew_2300 are separated by 151 nucleotidesShew_2300 and Shew_2301 are separated by 152 nucleotides Shew_2298: Shew_2298 - putative alpha-glucosidase (RefSeq), at 2,690,488 to 2,692,431 _2298 Shew_2299: Shew_2299 - DNA topoisomerase III (RefSeq), at 2,692,559 to 2,694,571 _2299 Shew_2300: Shew_2300 - hypothetical protein (RefSeq), at 2,694,723 to 2,694,998 _2300 Shew_2301: Shew_2301 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,695,151 to 2,697,268 _2301 Position (kb) 2692 2693 2694 2695Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 2691.866 kb on + strand, within Shew_2298at 2691.903 kb on - strand, within Shew_2298at 2691.989 kb on - strand, within Shew_2298at 2691.995 kb on + strand, within Shew_2298at 2692.142 kb on + strand, within Shew_2298at 2692.206 kb on - strand, within Shew_2298at 2692.381 kb on - strandat 2692.481 kb on - strandat 2692.713 kb on + strandat 2693.089 kb on - strand, within Shew_2299at 2693.327 kb on - strand, within Shew_2299at 2693.327 kb on - strand, within Shew_2299at 2693.385 kb on + strand, within Shew_2299at 2693.413 kb on + strand, within Shew_2299at 2693.523 kb on + strand, within Shew_2299at 2693.707 kb on - strand, within Shew_2299at 2694.348 kb on + strand, within Shew_2299at 2694.955 kb on + strand, within Shew_2300at 2695.425 kb on + strand, within Shew_2301at 2695.458 kb on + strand, within Shew_2301

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility M3
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2,691,866 + Shew_2298 0.71 -0.3
2,691,903 - Shew_2298 0.73 +0.6
2,691,989 - Shew_2298 0.77 -0.2
2,691,995 + Shew_2298 0.78 -0.3
2,692,142 + Shew_2298 0.85 -0.7
2,692,206 - Shew_2298 0.88 -0.3
2,692,381 - +0.9
2,692,481 - +0.6
2,692,713 + -2.7
2,693,089 - Shew_2299 0.26 -0.5
2,693,327 - Shew_2299 0.38 -0.1
2,693,327 - Shew_2299 0.38 +0.5
2,693,385 + Shew_2299 0.41 +0.3
2,693,413 + Shew_2299 0.42 +0.9
2,693,523 + Shew_2299 0.48 -0.2
2,693,707 - Shew_2299 0.57 -0.3
2,694,348 + Shew_2299 0.89 -0.5
2,694,955 + Shew_2300 0.84 -8.0
2,695,425 + Shew_2301 0.13 -1.3
2,695,458 + Shew_2301 0.14 +0.5

Or see this region's nucleotide sequence