Experiment: Motility M3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2298 and Shew_2299 are separated by 127 nucleotides Shew_2299 and Shew_2300 are separated by 151 nucleotides Shew_2300 and Shew_2301 are separated by 152 nucleotides
Shew_2298: Shew_2298 - putative alpha-glucosidase (RefSeq), at 2,690,488 to 2,692,431
_2298
Shew_2299: Shew_2299 - DNA topoisomerase III (RefSeq), at 2,692,559 to 2,694,571
_2299
Shew_2300: Shew_2300 - hypothetical protein (RefSeq), at 2,694,723 to 2,694,998
_2300
Shew_2301: Shew_2301 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,695,151 to 2,697,268
_2301
Position (kb)
2692
2693
2694
2695 Strain fitness (log2 ratio)
-8
-7
-6
-5
-4
-3
-2
-1
0
1 at 2691.866 kb on + strand, within Shew_2298 at 2691.903 kb on - strand, within Shew_2298 at 2691.989 kb on - strand, within Shew_2298 at 2691.995 kb on + strand, within Shew_2298 at 2692.142 kb on + strand, within Shew_2298 at 2692.206 kb on - strand, within Shew_2298 at 2692.381 kb on - strand at 2692.481 kb on - strand at 2692.713 kb on + strand at 2693.089 kb on - strand, within Shew_2299 at 2693.327 kb on - strand, within Shew_2299 at 2693.327 kb on - strand, within Shew_2299 at 2693.385 kb on + strand, within Shew_2299 at 2693.413 kb on + strand, within Shew_2299 at 2693.523 kb on + strand, within Shew_2299 at 2693.707 kb on - strand, within Shew_2299 at 2694.348 kb on + strand, within Shew_2299 at 2694.955 kb on + strand, within Shew_2300 at 2695.425 kb on + strand, within Shew_2301 at 2695.458 kb on + strand, within Shew_2301
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M3 remove 2,691,866 + Shew_2298 0.71 -0.3 2,691,903 - Shew_2298 0.73 +0.6 2,691,989 - Shew_2298 0.77 -0.2 2,691,995 + Shew_2298 0.78 -0.3 2,692,142 + Shew_2298 0.85 -0.7 2,692,206 - Shew_2298 0.88 -0.3 2,692,381 - +0.9 2,692,481 - +0.6 2,692,713 + -2.7 2,693,089 - Shew_2299 0.26 -0.5 2,693,327 - Shew_2299 0.38 -0.1 2,693,327 - Shew_2299 0.38 +0.5 2,693,385 + Shew_2299 0.41 +0.3 2,693,413 + Shew_2299 0.42 +0.9 2,693,523 + Shew_2299 0.48 -0.2 2,693,707 - Shew_2299 0.57 -0.3 2,694,348 + Shew_2299 0.89 -0.5 2,694,955 + Shew_2300 0.84 -8.0 2,695,425 + Shew_2301 0.13 -1.3 2,695,458 + Shew_2301 0.14 +0.5
Or see this region's nucleotide sequence