Strain Fitness in Shewanella loihica PV-4 around Shew_2219

Experiment: Motility M3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2218 and Shew_2219 are separated by 58 nucleotidesShew_2219 and Shew_2220 are separated by 58 nucleotidesShew_2220 and Shew_2221 are separated by 17 nucleotidesShew_2221 and Shew_2222 are separated by 93 nucleotides Shew_2218: Shew_2218 - signal transduction histidine kinase regulating citrate/malate metabolism (RefSeq), at 2,589,005 to 2,591,644 _2218 Shew_2219: Shew_2219 - hypothetical protein (RefSeq), at 2,591,703 to 2,592,629 _2219 Shew_2220: Shew_2220 - hypothetical protein (RefSeq), at 2,592,688 to 2,593,062 _2220 Shew_2221: Shew_2221 - hypothetical protein (RefSeq), at 2,593,080 to 2,593,373 _2221 Shew_2222: Shew_2222 - hypothetical protein (RefSeq), at 2,593,467 to 2,593,817 _2222 Position (kb) 2591 2592 2593Strain fitness (log2 ratio) -2 -1 0 1at 2590.715 kb on + strand, within Shew_2218at 2591.284 kb on + strand, within Shew_2218at 2591.800 kb on + strand, within Shew_2219at 2591.859 kb on + strand, within Shew_2219at 2591.867 kb on - strand, within Shew_2219at 2591.867 kb on - strand, within Shew_2219at 2592.423 kb on + strand, within Shew_2219at 2593.629 kb on + strand, within Shew_2222

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility M3
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2,590,715 + Shew_2218 0.65 -0.0
2,591,284 + Shew_2218 0.86 +0.3
2,591,800 + Shew_2219 0.10 -2.5
2,591,859 + Shew_2219 0.17 -2.0
2,591,867 - Shew_2219 0.18 -0.6
2,591,867 - Shew_2219 0.18 -2.7
2,592,423 + Shew_2219 0.78 -2.3
2,593,629 + Shew_2222 0.46 -0.5

Or see this region's nucleotide sequence