Experiment: Motility M3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2218 and Shew_2219 are separated by 58 nucleotides Shew_2219 and Shew_2220 are separated by 58 nucleotides Shew_2220 and Shew_2221 are separated by 17 nucleotides Shew_2221 and Shew_2222 are separated by 93 nucleotides
Shew_2218: Shew_2218 - signal transduction histidine kinase regulating citrate/malate metabolism (RefSeq), at 2,589,005 to 2,591,644
_2218
Shew_2219: Shew_2219 - hypothetical protein (RefSeq), at 2,591,703 to 2,592,629
_2219
Shew_2220: Shew_2220 - hypothetical protein (RefSeq), at 2,592,688 to 2,593,062
_2220
Shew_2221: Shew_2221 - hypothetical protein (RefSeq), at 2,593,080 to 2,593,373
_2221
Shew_2222: Shew_2222 - hypothetical protein (RefSeq), at 2,593,467 to 2,593,817
_2222
Position (kb)
2591
2592
2593 Strain fitness (log2 ratio)
-2
-1
0
1 at 2590.715 kb on + strand, within Shew_2218 at 2591.284 kb on + strand, within Shew_2218 at 2591.800 kb on + strand, within Shew_2219 at 2591.859 kb on + strand, within Shew_2219 at 2591.867 kb on - strand, within Shew_2219 at 2591.867 kb on - strand, within Shew_2219 at 2592.423 kb on + strand, within Shew_2219 at 2593.629 kb on + strand, within Shew_2222
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M3 remove 2,590,715 + Shew_2218 0.65 -0.0 2,591,284 + Shew_2218 0.86 +0.3 2,591,800 + Shew_2219 0.10 -2.5 2,591,859 + Shew_2219 0.17 -2.0 2,591,867 - Shew_2219 0.18 -0.6 2,591,867 - Shew_2219 0.18 -2.7 2,592,423 + Shew_2219 0.78 -2.3 2,593,629 + Shew_2222 0.46 -0.5
Or see this region's nucleotide sequence