Strain Fitness in Shewanella loihica PV-4 around Shew_2027

Experiment: Motility M3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2026 and Shew_2027 are separated by 56 nucleotidesShew_2027 and Shew_2028 are separated by 131 nucleotides Shew_2026: Shew_2026 - alanine dehydrogenase (RefSeq), at 2,340,047 to 2,341,162 _2026 Shew_2027: Shew_2027 - NAD(P) transhydrogenase subunit alpha (RefSeq), at 2,341,219 to 2,341,938 _2027 Shew_2028: Shew_2028 - thioredoxin reductase (RefSeq), at 2,342,070 to 2,343,020 _2028 Position (kb) 2341 2342Strain fitness (log2 ratio) -1 0 1at 2342.015 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility M3
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2,342,015 - -0.3

Or see this region's nucleotide sequence