Experiment: Motility M3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1074 and Shew_1075 are separated by 169 nucleotides Shew_1075 and Shew_1076 are separated by 152 nucleotides Shew_1076 and Shew_1077 are separated by 75 nucleotides
Shew_1074: Shew_1074 - cytochrome B561 (RefSeq), at 1,237,896 to 1,238,591
_1074
Shew_1075: Shew_1075 - cytochrome c, class II (RefSeq), at 1,238,761 to 1,239,222
_1075
Shew_1076: Shew_1076 - Trp operon repressor (RefSeq), at 1,239,375 to 1,239,728
_1076
Shew_1077: Shew_1077 - hypothetical protein (RefSeq), at 1,239,804 to 1,240,235
_1077
Position (kb) 1238
1239
1240 Strain fitness (log2 ratio) -1
0
1 at 1237.818 kb on + strand at 1237.826 kb on - strand at 1237.900 kb on + strand at 1237.908 kb on - strand at 1237.993 kb on - strand, within Shew_1074 at 1238.008 kb on - strand, within Shew_1074 at 1238.260 kb on + strand, within Shew_1074 at 1238.268 kb on - strand, within Shew_1074 at 1238.345 kb on - strand, within Shew_1074 at 1239.549 kb on - strand, within Shew_1076 at 1239.580 kb on - strand, within Shew_1076 at 1239.870 kb on - strand, within Shew_1077 at 1239.882 kb on + strand, within Shew_1077
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M3 remove 1,237,818 + +0.1 1,237,826 - +0.9 1,237,900 + +0.1 1,237,908 - -0.7 1,237,993 - Shew_1074 0.14 -1.2 1,238,008 - Shew_1074 0.16 +0.7 1,238,260 + Shew_1074 0.52 +0.8 1,238,268 - Shew_1074 0.53 +0.4 1,238,345 - Shew_1074 0.65 +0.5 1,239,549 - Shew_1076 0.49 -1.0 1,239,580 - Shew_1076 0.58 -1.2 1,239,870 - Shew_1077 0.15 +0.4 1,239,882 + Shew_1077 0.18 -0.1
Or see this region's nucleotide sequence