Experiment: Motility M3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tyrA and Shew_1069 are separated by 537 nucleotides Shew_1069 and Shew_1070 are separated by 59 nucleotides
Shew_1068: tyrA - bifunctional chorismate mutase/prephenate dehydrogenase (RefSeq), at 1,229,125 to 1,230,279
tyrA
Shew_1069: Shew_1069 - hydroxylamine reductase (RefSeq), at 1,230,817 to 1,232,481
_1069
Shew_1070: Shew_1070 - oxidoreductase FAD-binding subunit (RefSeq), at 1,232,541 to 1,233,626
_1070
Position (kb)
1230
1231
1232
1233 Strain fitness (log2 ratio)
-2
-1
0
1 at 1230.812 kb on + strand at 1231.033 kb on + strand, within Shew_1069 at 1231.086 kb on + strand, within Shew_1069 at 1231.239 kb on - strand, within Shew_1069 at 1231.332 kb on - strand, within Shew_1069 at 1231.389 kb on - strand, within Shew_1069 at 1231.494 kb on - strand, within Shew_1069 at 1231.687 kb on + strand, within Shew_1069 at 1231.938 kb on + strand, within Shew_1069 at 1232.100 kb on - strand, within Shew_1069 at 1232.113 kb on + strand, within Shew_1069 at 1232.184 kb on + strand, within Shew_1069 at 1232.695 kb on - strand, within Shew_1070 at 1232.764 kb on + strand, within Shew_1070 at 1233.055 kb on - strand, within Shew_1070 at 1233.083 kb on + strand, within Shew_1070 at 1233.184 kb on - strand, within Shew_1070 at 1233.417 kb on - strand, within Shew_1070 at 1233.479 kb on + strand, within Shew_1070 at 1233.480 kb on - strand, within Shew_1070
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M3 remove 1,230,812 + -2.2 1,231,033 + Shew_1069 0.13 -0.2 1,231,086 + Shew_1069 0.16 +0.4 1,231,239 - Shew_1069 0.25 -0.6 1,231,332 - Shew_1069 0.31 +0.0 1,231,389 - Shew_1069 0.34 -2.3 1,231,494 - Shew_1069 0.41 -0.2 1,231,687 + Shew_1069 0.52 -0.7 1,231,938 + Shew_1069 0.67 -0.4 1,232,100 - Shew_1069 0.77 -0.1 1,232,113 + Shew_1069 0.78 +0.9 1,232,184 + Shew_1069 0.82 -1.1 1,232,695 - Shew_1070 0.14 +1.3 1,232,764 + Shew_1070 0.21 +1.2 1,233,055 - Shew_1070 0.47 -0.6 1,233,083 + Shew_1070 0.50 +0.6 1,233,184 - Shew_1070 0.59 -0.4 1,233,417 - Shew_1070 0.81 -0.1 1,233,479 + Shew_1070 0.86 -0.5 1,233,480 - Shew_1070 0.86 -0.0
Or see this region's nucleotide sequence