Experiment: Motility M3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0746 and Shew_0747 are separated by 206 nucleotides Shew_0747 and Shew_0748 are separated by 121 nucleotides Shew_0748 and Shew_0749 are separated by 71 nucleotides
Shew_0746: Shew_0746 - diguanylate cyclase (RefSeq), at 846,833 to 847,777
_0746
Shew_0747: Shew_0747 - GGDEF domain-containing protein (RefSeq), at 847,984 to 848,940
_0747
Shew_0748: Shew_0748 - acetyltransferase (RefSeq), at 849,062 to 849,622
_0748
Shew_0749: Shew_0749 - hypothetical protein (RefSeq), at 849,694 to 850,038
_0749
Position (kb) 847
848
849 Strain fitness (log2 ratio) -1
0
1 at 847.065 kb on - strand, within Shew_0746 at 847.553 kb on - strand, within Shew_0746 at 847.555 kb on + strand, within Shew_0746 at 847.618 kb on - strand, within Shew_0746 at 848.310 kb on + strand, within Shew_0747 at 848.465 kb on - strand, within Shew_0747 at 848.569 kb on + strand, within Shew_0747 at 848.577 kb on - strand, within Shew_0747 at 848.681 kb on + strand, within Shew_0747 at 848.731 kb on + strand, within Shew_0747 at 848.946 kb on + strand at 849.039 kb on + strand at 849.141 kb on + strand, within Shew_0748 at 849.330 kb on - strand, within Shew_0748 at 849.404 kb on - strand, within Shew_0748 at 849.417 kb on + strand, within Shew_0748 at 849.417 kb on + strand, within Shew_0748 at 849.543 kb on - strand, within Shew_0748 at 849.617 kb on + strand at 849.775 kb on - strand, within Shew_0749 at 849.838 kb on - strand, within Shew_0749
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M3 remove 847,065 - Shew_0746 0.25 -0.4 847,553 - Shew_0746 0.76 -0.9 847,555 + Shew_0746 0.76 +0.2 847,618 - Shew_0746 0.83 -0.9 848,310 + Shew_0747 0.34 -1.4 848,465 - Shew_0747 0.50 +0.3 848,569 + Shew_0747 0.61 +0.2 848,577 - Shew_0747 0.62 +0.5 848,681 + Shew_0747 0.73 -1.2 848,731 + Shew_0747 0.78 -0.7 848,946 + +0.2 849,039 + -0.1 849,141 + Shew_0748 0.14 -0.2 849,330 - Shew_0748 0.48 -0.4 849,404 - Shew_0748 0.61 +0.1 849,417 + Shew_0748 0.63 +1.1 849,417 + Shew_0748 0.63 +0.4 849,543 - Shew_0748 0.86 +1.6 849,617 + +1.0 849,775 - Shew_0749 0.23 +0.2 849,838 - Shew_0749 0.42 -0.0
Or see this region's nucleotide sequence