Experiment: Motility M3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0736 and Shew_0737 are separated by 123 nucleotides Shew_0737 and Shew_0738 are separated by 136 nucleotides
Shew_0736: Shew_0736 - aldo/keto reductase (RefSeq), at 837,432 to 838,472
_0736
Shew_0737: Shew_0737 - MarR family transcriptional regulator (RefSeq), at 838,596 to 839,564
_0737
Shew_0738: Shew_0738 - NTPase (RefSeq), at 839,701 to 840,318
_0738
Position (kb) 838
839
840 Strain fitness (log2 ratio) -2
-1
0
1
2 at 837.967 kb on + strand, within Shew_0736 at 838.136 kb on - strand, within Shew_0736 at 838.444 kb on - strand at 838.444 kb on - strand at 838.457 kb on + strand at 838.465 kb on - strand at 838.465 kb on - strand at 838.495 kb on + strand at 838.799 kb on - strand, within Shew_0737 at 838.911 kb on + strand, within Shew_0737 at 839.083 kb on + strand, within Shew_0737 at 839.086 kb on - strand, within Shew_0737 at 839.096 kb on - strand, within Shew_0737 at 839.144 kb on + strand, within Shew_0737 at 839.157 kb on - strand, within Shew_0737 at 839.228 kb on - strand, within Shew_0737 at 839.445 kb on - strand, within Shew_0737 at 839.445 kb on - strand, within Shew_0737 at 839.670 kb on - strand at 839.675 kb on - strand at 839.690 kb on - strand at 839.862 kb on + strand, within Shew_0738 at 840.257 kb on - strand at 840.410 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M3 remove 837,967 + Shew_0736 0.51 +1.9 838,136 - Shew_0736 0.68 +0.0 838,444 - +0.0 838,444 - -1.1 838,457 + -0.6 838,465 - -0.7 838,465 - +0.2 838,495 + -1.4 838,799 - Shew_0737 0.21 -0.2 838,911 + Shew_0737 0.33 -2.7 839,083 + Shew_0737 0.50 +2.0 839,086 - Shew_0737 0.51 -2.2 839,096 - Shew_0737 0.52 +0.4 839,144 + Shew_0737 0.57 +0.2 839,157 - Shew_0737 0.58 +0.1 839,228 - Shew_0737 0.65 +0.7 839,445 - Shew_0737 0.88 +0.2 839,445 - Shew_0737 0.88 +0.0 839,670 - -2.1 839,675 - +0.4 839,690 - +0.8 839,862 + Shew_0738 0.26 +0.0 840,257 - +0.8 840,410 + +1.3
Or see this region's nucleotide sequence